NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|64311287|gb|AAY41301|]
View 

NADH dehydrogenase subunit 3, partial (mitochondrion) [Pachyornis geranoides]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK06602 super family cl00535
NADH:ubiquinone oxidoreductase subunit A; Validated
 1-79 5.87e-35

NADH:ubiquinone oxidoreductase subunit A; Validated


The actual alignment was detected with superfamily member MTH00136:

Pssm-ID: 469809 [Multi-domain]  Cd Length: 116  Bit Score: 114.63  E-value: 5.87e-35
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 64311287    1 TEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPQPLLTLLWTSMILLLLTLGLAYEWMQG 79
Cdd:MTH00136  32 HEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLPSPLLTFFWATAVLILLTLGLIYEWLQG 110
 
Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-79 5.87e-35

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 114.63  E-value: 5.87e-35
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 64311287    1 TEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPQPLLTLLWTSMILLLLTLGLAYEWMQG 79
Cdd:MTH00136  32 HEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLPSPLLTFFWATAVLILLTLGLIYEWLQG 110
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
2-79 2.80e-21

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 79.39  E-value: 2.80e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 64311287    2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLPQPLLTLLWTSMILLLLTLG-LAYEWMQG 79
Cdd:pfam00507 15 EKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELGWFGFVEMLIFIAILLVgLVYAWKKG 91
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 2-49 2.10e-16

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 67.45  E-value: 2.10e-16
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 64311287   2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLlpLPWAI 49
Cdd:COG0838  37 EKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAV 82
 
Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-79 5.87e-35

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 114.63  E-value: 5.87e-35
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 64311287    1 TEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPQPLLTLLWTSMILLLLTLGLAYEWMQG 79
Cdd:MTH00136  32 HEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLPSPLLTFFWATAVLILLTLGLIYEWLQG 110
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-79 1.13e-34

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 113.82  E-value: 1.13e-34
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 64311287    1 TEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPQPLLTLLWTSMILLLLTLGLAYEWMQG 79
Cdd:MTH00113  31 NEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAINLTTPTTTLTWATIILTLLTLGLIYEWLQG 109
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 1-79 1.44e-34

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 113.55  E-value: 1.44e-34
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 64311287    1 TEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPQPLLTLLWTSMILLLLTLGLAYEWMQG 79
Cdd:MTH00069  30 SEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLNTPTNTLFWSTLILILLTLGLIYEWIQG 108
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-78 5.20e-31

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 104.64  E-value: 5.20e-31
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 64311287    1 TEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPQPLLTLLWTSMILLLLTLGLAYEWMQ 78
Cdd:MTH00106  31 SEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLNTMLTMALLLISLLALSLAYEWTQ 108
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 2-79 2.21e-25

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 90.43  E-value: 2.21e-25
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 64311287    2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPQPLLTLLWTSMILLLLTLGLAYEWMQG 79
Cdd:MTH00042  33 EKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATLITNPSTLLPISLIFLIILTIGLVYEWVNG 110
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 2-79 1.20e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 83.41  E-value: 1.20e-22
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 64311287    2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAiqLPQPLLTLLWTSMILLLLTLGLAYEWMQG 79
Cdd:MTH00203  33 EKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWS--NQLSSLSLLLAFLFLILLTLGLIYEWLQG 108
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 2-79 7.81e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 81.44  E-value: 7.81e-22
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 64311287    2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPQPLLTLLWTSMILLLLTLGLAYEWMQG 79
Cdd:MTH00148  34 EKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSLGSSFSVWSLTSLFIFLLILILGLFHEWNEG 111
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
2-79 2.80e-21

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 79.39  E-value: 2.80e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 64311287    2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLPQPLLTLLWTSMILLLLTLG-LAYEWMQG 79
Cdd:pfam00507 15 EKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELGWFGFVEMLIFIAILLVgLVYAWKKG 91
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 2-79 3.04e-21

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 79.82  E-value: 3.04e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 64311287    2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPQPLLTLLWTSMILLLLTLGLAYEWMQG 79
Cdd:MTH00161  32 EKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSNMMSWLITSSFFILILLLGLYYEWNQG 109
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 2-79 1.75e-19

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 75.41  E-value: 1.75e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 64311287    2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPQPLLTLLWTSMILLLLTLGLAYEWMQG 79
Cdd:MTH00202  34 EKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVLKSSWSKGGLLGGTIFLLILIGGLIHEWKEG 111
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 2-79 1.16e-16

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 68.35  E-value: 1.16e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 64311287    2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLPQPLLTLLWTSMILLLLTLG-LAYEWMQG 79
Cdd:PRK06602  40 EKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWAVSFREIGWLGFVEAMIFILVLLVgLVYLWRKG 116
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 1-79 1.18e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 68.20  E-value: 1.18e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64311287    1 TEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLPQPLLTLLWTSMILLLLTLG-LAYEWMQG 79
Cdd:MTH00055  36 SEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFL--FPWCVVYNQIGLFGFWVMYLFLIILTIgLIYEWVKG 113
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 2-79 1.89e-16

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 67.96  E-value: 1.89e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 64311287    2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPQPLLTLLWTSMILLLLTLGLAYEWMQG 79
Cdd:MTH00012  34 EKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTILMTSTSKTVVYTSILFLLILVIGLIHEWREG 111
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 2-49 2.10e-16

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 67.45  E-value: 2.10e-16
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 64311287   2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLlpLPWAI 49
Cdd:COG0838  37 EKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAV 82
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 2-79 7.27e-15

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 63.54  E-value: 7.27e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 64311287    2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLPQPLLTLLWTSMILLLLTLG-LAYEWMQG 79
Cdd:MTH00018  32 EKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFL--FPWCVLYNQIAPFGFWTMVGFLFILTLgLIYEWIKG 108
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 1-79 1.75e-12

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 57.64  E-value: 1.75e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64311287    1 TEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLPQPLLTLLWTSMILLLLTLG-LAYEWMQG 79
Cdd:MTH00030  41 SEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFL--FPWSIVFNQLNLFSFWIVYTFLIVLAIgLAYEWIKG 118
ndhC CHL00022
NADH dehydrogenase subunit 3
 2-49 3.47e-07

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 43.82  E-value: 3.47e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 64311287    2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLlpLPWAI 49
Cdd:CHL00022  39 EKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAM 84
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 3-43 8.05e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 40.26  E-value: 8.05e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 64311287    3 KLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLL 43
Cdd:MTH00092  34 KVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFL 74
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
3-49 1.05e-05

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 40.42  E-value: 1.05e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 64311287    3 KLSPYECGFDPLGSARlPFSIRFFLVAILFLLFDLEIALLlpLPWAI 49
Cdd:PRK08489  47 KLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFM--FPWAV 90
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 5-46 1.42e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 37.18  E-value: 1.42e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 64311287    5 SPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLP 46
Cdd:MTH00060  39 SSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH