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Conserved domains on  [gi|67090176|gb|AAY67466|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Pachyornis geranoides]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 super family cl33343
NADH dehydrogenase subunit 5; Validated
 3-108 1.14e-40

NADH dehydrogenase subunit 5; Validated


The actual alignment was detected with superfamily member MTH00004:

Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 141.07  E-value: 1.14e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67090176    3 PLLLNTSIILTLTTLLLPTMLPLISPKLQNTPSTITSAVKTAFFISLIPMSSFIYSGTETITSHWYWNFSANFKIPISFK 82
Cdd:MTH00004   2 TLLLNTTTLLTLLILLTPILLPLLSKNLKNSPTTIKTTVKLAFLISLIPLTLFLNSGTESITTNWPWIFTTTFNIPISFK 81

                         90       100
                 ....*....|....*....|....*.
gi 67090176   83 MDQYSMMFLPIALFVTWSILQFATWY 108
Cdd:MTH00004  82 LDQYSLMFLPIALFVTWSILEFSTWY 107
 
Name Accession Description Interval E-value
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 3-108 1.14e-40

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 141.07  E-value: 1.14e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67090176    3 PLLLNTSIILTLTTLLLPTMLPLISPKLQNTPSTITSAVKTAFFISLIPMSSFIYSGTETITSHWYWNFSANFKIPISFK 82
Cdd:MTH00004   2 TLLLNTTTLLTLLILLTPILLPLLSKNLKNSPTTIKTTVKLAFLISLIPLTLFLNSGTESITTNWPWIFTTTFNIPISFK 81

                         90       100
                 ....*....|....*....|....*.
gi 67090176   83 MDQYSMMFLPIALFVTWSILQFATWY 108
Cdd:MTH00004  82 LDQYSLMFLPIALFVTWSILEFSTWY 107
Proton_antipo_N pfam00662
NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; This sub-family represents an ...
 69-108 4.41e-06

NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; This sub-family represents an amino terminal extension of pfam00361. Only NADH-Ubiquinone chain 5 and eubacterial chain L are in this family. This sub-family is part of complex I which catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane.


Pssm-ID: 459895 [Multi-domain]  Cd Length: 51  Bit Score: 40.49  E-value: 4.41e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 67090176    69 WNFSANFKIPISFKMDQYSMMFLPIALFVTWSILQFATWY 108
Cdd:pfam00662   1 WLSVGDLSISFGFLIDPLSALMLLVVTGVSLLVHIYSIGY 40
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 44-108 5.91e-03

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 34.74  E-value: 5.91e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 67090176  44 AFFISLIPMSSFIYS--------GTETITSHWYWNFSANFKIPISFKMDQYSMMFLPIALFVTWSILQFATWY 108
Cdd:COG1009  31 GWLAALAPLAAFVLSlllfpavlGGEVVVELYTWIPVGSLGLDFGFRLDGLSLLMLLLVTGVGLLVHIYSIGY 103
 
Name Accession Description Interval E-value
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 3-108 1.14e-40

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 141.07  E-value: 1.14e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67090176    3 PLLLNTSIILTLTTLLLPTMLPLISPKLQNTPSTITSAVKTAFFISLIPMSSFIYSGTETITSHWYWNFSANFKIPISFK 82
Cdd:MTH00004   2 TLLLNTTTLLTLLILLTPILLPLLSKNLKNSPTTIKTTVKLAFLISLIPLTLFLNSGTESITTNWPWIFTTTFNIPISFK 81

                         90       100
                 ....*....|....*....|....*.
gi 67090176   83 MDQYSMMFLPIALFVTWSILQFATWY 108
Cdd:MTH00004  82 LDQYSLMFLPIALFVTWSILEFSTWY 107
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 26-108 1.95e-28

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 107.23  E-value: 1.95e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67090176   26 ISPKLQNTPSTIT---SAVKTAFFISLIPMSSFIYSGTETITSHWYWNFSANFKIPISFKMDQYSMMFLPIALFVTWSIL 102
Cdd:MTH00137  26 LSPNPQKPNWALThvkTAVKTAFFVSLLPLFLFLNQGAETIITNWNWMNTLTFDINISFKFDHYSIIFTPIALYVTWSIL 105


                 ....*.
gi 67090176  103 QFATWY 108
Cdd:MTH00137 106 EFASWY 111
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 26-108 3.24e-27

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 103.83  E-value: 3.24e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67090176   26 ISPKLQNTPSTITSAVKTAFFISLIPMSSFIYSGTETITSHWYWNFSANFKIPISFKMDQYSMMFLPIALFVTWSILQFA 105
Cdd:MTH00066  23 LLPKSNNFHTNVKTSVKTAFFISLIPLMIFINQGLESITTSFHWMNIFNFNINSSFKFDQYSIIFLPIALFVTWSILEFA 102


                 ...
gi 67090176  106 TWY 108
Cdd:MTH00066 103 IWY 105
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 5-108 2.37e-26

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 101.47  E-value: 2.37e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67090176    5 LLNTSIILTLTTLLLPTMLPLISP-KLQNTPSTITSAVKTAFFISLIPMSSFIYSGTETITSHWYWNFSANFKIPISFKM 83
Cdd:MTH00108   3 LFTSSTLLTLLILTLPIIMTLTNPyKTNNYPLYVKTTISYAFIISLIPTMMFIHSGQEMIISNWHWMTIQTLKLSLSFKL 82

                         90       100
                 ....*....|....*....|....*
gi 67090176   84 DQYSMMFLPIALFVTWSILQFATWY 108
Cdd:MTH00108  83 DYFSMIFIPVALFVTWSIMEFSMWY 107
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 29-108 1.49e-16

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 73.45  E-value: 1.49e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67090176   29 KLQNTPSTITSAVKTAFFISLIPMSSFIYSGTETITSHWYWNFSANFKIPISFKMDQYSMMFLPIALFVTWSILQFATWY 108
Cdd:MTH00211  23 PLNNSKLHIKKAVKLSFFISLIPLLIFLDQGLETILTNWSWINLGLFSLNLSFKFDFYSIFFTSVALYVTWSILEFSLWY 102
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 38-108 1.68e-07

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 47.66  E-value: 1.68e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 67090176   38 TSAVKTAFFISLIPMSSFIYSG-TETITSHWYWNFSANFKIPISFKMDQYSMMFLPIALFVTWSILQFATWY 108
Cdd:MTH00208  59 ISLLKTLAFLSLINLLIWILLGcPNINISLSNWLSNTLFNFSLSFIFDFYFILFFSVALFVTWSIIEFSHYY 130
Proton_antipo_N pfam00662
NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; This sub-family represents an ...
 69-108 4.41e-06

NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; This sub-family represents an amino terminal extension of pfam00361. Only NADH-Ubiquinone chain 5 and eubacterial chain L are in this family. This sub-family is part of complex I which catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane.


Pssm-ID: 459895 [Multi-domain]  Cd Length: 51  Bit Score: 40.49  E-value: 4.41e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 67090176    69 WNFSANFKIPISFKMDQYSMMFLPIALFVTWSILQFATWY 108
Cdd:pfam00662   1 WLSVGDLSISFGFLIDPLSALMLLVVTGVSLLVHIYSIGY 40
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 44-108 5.91e-03

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 34.74  E-value: 5.91e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 67090176  44 AFFISLIPMSSFIYS--------GTETITSHWYWNFSANFKIPISFKMDQYSMMFLPIALFVTWSILQFATWY 108
Cdd:COG1009  31 GWLAALAPLAAFVLSlllfpavlGGEVVVELYTWIPVGSLGLDFGFRLDGLSLLMLLLVTGVGLLVHIYSIGY 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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