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cytochrome b, partial (mitochondrion) [Pachyornis australis]
cytochrome b family protein( domain architecture ID 581032)
cytochrome b family protein such as formate dehydrogenase subunit gamma or cytochrome b, a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
List of domain hits
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Name | Accession | Description | Interval | E-value | |||
Cytochrome_b_N super family | cl23723 | Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-92 | 1.71e-55 | |||
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD. The actual alignment was detected with superfamily member MTH00119: Pssm-ID: 474033 [Multi-domain] Cd Length: 380 Bit Score: 175.47 E-value: 1.71e-55
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Name | Accession | Description | Interval | E-value | |||
CYTB | MTH00119 | cytochrome b; Provisional |
1-92 | 1.71e-55 | |||
cytochrome b; Provisional Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 175.47 E-value: 1.71e-55
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QcrB/PetB | COG1290 | Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-90 | 1.02e-22 | |||
Cytochrome b subunit of the bc complex [Energy production and conversion]; Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 89.46 E-value: 1.02e-22
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Cytochrom_B_N_2 | pfam13631 | Cytochrome b(N-terminal)/b6/petB; |
1-92 | 6.16e-18 | |||
Cytochrome b(N-terminal)/b6/petB; Pssm-ID: 433364 Cd Length: 169 Bit Score: 73.43 E-value: 6.16e-18
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Cytochrome_b_N | cd00284 | Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-47 | 8.84e-18 | |||
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD. Pssm-ID: 238176 Cd Length: 200 Bit Score: 73.56 E-value: 8.84e-18
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Name | Accession | Description | Interval | E-value | |||
CYTB | MTH00119 | cytochrome b; Provisional |
1-92 | 1.71e-55 | |||
cytochrome b; Provisional Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 175.47 E-value: 1.71e-55
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CYTB | MTH00131 | cytochrome b; Provisional |
1-92 | 3.60e-48 | |||
cytochrome b; Provisional Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 156.74 E-value: 3.60e-48
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CYTB | MTH00100 | cytochrome b; Provisional |
1-92 | 7.67e-47 | |||
cytochrome b; Provisional Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 153.26 E-value: 7.67e-47
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CYTB | MTH00156 | cytochrome b; Provisional |
1-92 | 1.68e-46 | |||
cytochrome b; Provisional Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 151.47 E-value: 1.68e-46
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CYTB | MTH00191 | cytochrome b; Provisional |
1-92 | 1.40e-45 | |||
cytochrome b; Provisional Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 149.68 E-value: 1.40e-45
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CYTB | MTH00145 | cytochrome b; Provisional |
1-92 | 7.09e-45 | |||
cytochrome b; Provisional Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 148.13 E-value: 7.09e-45
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CYTB | MTH00074 | cytochrome b; Provisional |
1-92 | 4.42e-44 | |||
cytochrome b; Provisional Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 145.98 E-value: 4.42e-44
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CYTB | MTH00016 | cytochrome b; Validated |
1-92 | 7.39e-42 | |||
cytochrome b; Validated Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 140.20 E-value: 7.39e-42
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CYTB | MTH00034 | cytochrome b; Validated |
1-92 | 5.34e-39 | |||
cytochrome b; Validated Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 132.91 E-value: 5.34e-39
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CYTB | MTH00224 | cytochrome b; Provisional |
1-91 | 6.86e-33 | |||
cytochrome b; Provisional Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 116.56 E-value: 6.86e-33
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CYTB | MTH00022 | cytochrome b; Validated |
1-92 | 6.48e-31 | |||
cytochrome b; Validated Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 111.33 E-value: 6.48e-31
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CYTB | MTH00053 | cytochrome b; Provisional |
1-92 | 6.99e-31 | |||
cytochrome b; Provisional Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 111.34 E-value: 6.99e-31
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CYTB | MTH00033 | cytochrome b; Provisional |
1-84 | 2.10e-25 | |||
cytochrome b; Provisional Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 96.93 E-value: 2.10e-25
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QcrB/PetB | COG1290 | Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-90 | 1.02e-22 | |||
Cytochrome b subunit of the bc complex [Energy production and conversion]; Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 89.46 E-value: 1.02e-22
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CYTB | MTH00046 | cytochrome b; Validated |
7-91 | 4.79e-19 | |||
cytochrome b; Validated Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 79.26 E-value: 4.79e-19
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Cytochrom_B_N_2 | pfam13631 | Cytochrome b(N-terminal)/b6/petB; |
1-92 | 6.16e-18 | |||
Cytochrome b(N-terminal)/b6/petB; Pssm-ID: 433364 Cd Length: 169 Bit Score: 73.43 E-value: 6.16e-18
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CYTB | MTH00086 | cytochrome b; Provisional |
1-92 | 8.18e-18 | |||
cytochrome b; Provisional Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 75.75 E-value: 8.18e-18
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Cytochrome_b_N | cd00284 | Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-47 | 8.84e-18 | |||
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD. Pssm-ID: 238176 Cd Length: 200 Bit Score: 73.56 E-value: 8.84e-18
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Cytochrome_B | pfam00033 | Cytochrome b/b6/petB; |
1-45 | 2.09e-13 | |||
Cytochrome b/b6/petB; Pssm-ID: 306530 Cd Length: 189 Bit Score: 62.01 E-value: 2.09e-13
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cytochrome_b_C | cd00290 | Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
48-92 | 3.39e-08 | |||
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD. Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 47.64 E-value: 3.39e-08
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petB | CHL00070 | cytochrome b6 |
1-50 | 8.58e-06 | |||
cytochrome b6 Pssm-ID: 177009 Cd Length: 215 Bit Score: 42.02 E-value: 8.58e-06
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PRK03735 | PRK03735 | cytochrome b6; Provisional |
1-50 | 2.76e-05 | |||
cytochrome b6; Provisional Pssm-ID: 179639 Cd Length: 223 Bit Score: 40.47 E-value: 2.76e-05
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Blast search parameters | ||||
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