NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|67090400|gb|AAY67578|]
View 

cytochrome b, partial (mitochondrion) [Dinornis novaezealandiae]

Protein Classification

cytochrome b family protein( domain architecture ID 581032)

cytochrome b family protein such as formate dehydrogenase subunit gamma or cytochrome b, a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.

Gene Ontology:  GO:0046872|GO:0016491

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Cytochrome_b_N super family cl23723
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-92 8.89e-54

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


The actual alignment was detected with superfamily member MTH00119:

Pssm-ID: 474033 [Multi-domain]  Cd Length: 380  Bit Score: 171.24  E-value: 8.89e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67090400    1 LVEWAWGGFSVDNPTLTRFFALYFFLPFLIAGITLIHLTFLHESGSNNPLGIVSHCDKIPFHPYFSTKDILGFTLMFIPL 80
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                         90
                 ....*....|..
gi 67090400   81 LTLAFFSPNLLG 92
Cdd:MTH00119 241 LTLALFSPNLLG 252
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-92 8.89e-54

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 171.24  E-value: 8.89e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67090400    1 LVEWAWGGFSVDNPTLTRFFALYFFLPFLIAGITLIHLTFLHESGSNNPLGIVSHCDKIPFHPYFSTKDILGFTLMFIPL 80
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                         90
                 ....*....|..
gi 67090400   81 LTLAFFSPNLLG 92
Cdd:MTH00119 241 LTLALFSPNLLG 252
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-90 9.08e-21

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 84.07  E-value: 9.08e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67090400   1 LVEWAWGGFSVDNPTLTRFFAL-YFFLPFLIAGITLIHLTFLHESGSNNPLGI----VSHCDKIPFHPYFSTKDILGFTL 75
Cdd:COG1290 171 LVTWLFGGEFPGDATLNRFFALhVLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFV 250

                        90
                ....*....|....*
gi 67090400  76 MFIPLLTLAFFSPNL 90
Cdd:COG1290 251 FLGVFALLAFFFPIN 265
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
1-92 2.84e-16

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 69.19  E-value: 2.84e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67090400     1 LVEWAWGGFSVDNPTLTRFFALYF-FLPFLIAGITLIHLTFLHESGSNNPLGIVSHCDKIPFHPYFSTKDILGFTLMFIP 79
Cdd:pfam13631  75 LVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVAL 154

                          90
                  ....*....|...
gi 67090400    80 LLTLAFFSPNLLG 92
Cdd:pfam13631 155 LIGLAQINPIWLG 167
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-47 5.01e-16

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 68.93  E-value: 5.01e-16
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*..
gi 67090400   1 LVEWAWGGFSVDNPTLTRFFALYFFLPFLIAGITLIHLTFLHESGSN 47
Cdd:cd00284 154 LVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-92 8.89e-54

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 171.24  E-value: 8.89e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67090400    1 LVEWAWGGFSVDNPTLTRFFALYFFLPFLIAGITLIHLTFLHESGSNNPLGIVSHCDKIPFHPYFSTKDILGFTLMFIPL 80
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                         90
                 ....*....|..
gi 67090400   81 LTLAFFSPNLLG 92
Cdd:MTH00119 241 LTLALFSPNLLG 252
CYTB MTH00131
cytochrome b; Provisional
 1-92 2.74e-46

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 151.73  E-value: 2.74e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67090400    1 LVEWAWGGFSVDNPTLTRFFALYFFLPFLIAGITLIHLTFLHESGSNNPLGIVSHCDKIPFHPYFSTKDILGFTLMFIPL 80
Cdd:MTH00131 160 LVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLAL 239

                         90
                 ....*....|..
gi 67090400   81 LTLAFFSPNLLG 92
Cdd:MTH00131 240 TSLALFSPNLLG 251
CYTB MTH00100
cytochrome b; Provisional
 1-92 3.27e-45

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 149.02  E-value: 3.27e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67090400    1 LVEWAWGGFSVDNPTLTRFFALYFFLPFLIAGITLIHLTFLHESGSNNPLGIVSHCDKIPFHPYFSTKDILGFTLMFIPL 80
Cdd:MTH00100 160 LVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTL 239

                         90
                 ....*....|..
gi 67090400   81 LTLAFFSPNLLG 92
Cdd:MTH00100 240 MLLVLFSPDLLG 251
CYTB MTH00156
cytochrome b; Provisional
 1-92 7.46e-44

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 144.92  E-value: 7.46e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67090400    1 LVEWAWGGFSVDNPTLTRFFALYFFLPFLIAGITLIHLTFLHESGSNNPLGIVSHCDKIPFHPYFSTKDILGFTLMFIPL 80
Cdd:MTH00156 150 LVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLL 229

                         90
                 ....*....|..
gi 67090400   81 LTLAFFSPNLLG 92
Cdd:MTH00156 230 ILLTLINPYLLG 241
CYTB MTH00191
cytochrome b; Provisional
 1-92 1.61e-43

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 144.29  E-value: 1.61e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67090400    1 LVEWAWGGFSVDNPTLTRFFALYFFLPFLIAGITLIHLTFLHESGSNNPLGIVSHCDKIPFHPYFSTKDILGFTLMFIPL 80
Cdd:MTH00191 157 LVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLL 236

                         90
                 ....*....|..
gi 67090400   81 LTLAFFSPNLLG 92
Cdd:MTH00191 237 LFLVLFSPNLLG 248
CYTB MTH00145
cytochrome b; Provisional
 1-92 4.20e-42

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 140.81  E-value: 4.20e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67090400    1 LVEWAWGGFSVDNPTLTRFFALYFFLPFLIAGITLIHLTFLHESGSNNPLGIVSHCDKIPFHPYFSTKDILGFTLMFIPL 80
Cdd:MTH00145 161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                         90
                 ....*....|..
gi 67090400   81 LTLAFFSPNLLG 92
Cdd:MTH00145 241 VFLVLFFPNLLG 252
CYTB MTH00074
cytochrome b; Provisional
 1-92 8.98e-42

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 139.82  E-value: 8.98e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67090400    1 LVEWAWGGFSVDNPTLTRFFALYFFLPFLIAGITLIHLTFLHESGSNNPLGIVSHCDKIPFHPYFSTKDILGFTLMFIPL 80
Cdd:MTH00074 161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                         90
                 ....*....|..
gi 67090400   81 LTLAFFSPNLLG 92
Cdd:MTH00074 241 ALLSLFSPNLLG 252
CYTB MTH00016
cytochrome b; Validated
 1-92 4.02e-40

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 135.58  E-value: 4.02e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67090400    1 LVEWAWGGFSVDNPTLTRFFALYFFLPFLIAGITLIHLTFLHESGSNNPLGIVSHCDKIPFHPYFSTKDILGFTLMFIPL 80
Cdd:MTH00016 161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                         90
                 ....*....|..
gi 67090400   81 LTLAFFSPNLLG 92
Cdd:MTH00016 241 LSVVLLWPNILG 252
CYTB MTH00034
cytochrome b; Validated
 1-92 1.36e-36

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 126.36  E-value: 1.36e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67090400    1 LVEWAWGGFSVDNPTLTRFFALYFFLPFLIAGITLIHLTFLHESGSNNPLGIVSHCDKIPFHPYFSTKDILGFTLMFIPL 80
Cdd:MTH00034 160 IVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAAL 239

                         90
                 ....*....|..
gi 67090400   81 LTLAFFSPNLLG 92
Cdd:MTH00034 240 SSLALLFPTALN 251
CYTB MTH00224
cytochrome b; Provisional
 1-91 1.30e-31

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 113.48  E-value: 1.30e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67090400    1 LVEWAWGGFSVDNPTLTRFFALYFFLPFLIAGITLIHLTFLHESGSNNPLGIVSHCDKIPFHPYFSTKDILGFTLMFIPL 80
Cdd:MTH00224 161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240

                         90
                 ....*....|.
gi 67090400   81 LTLAFFSPNLL 91
Cdd:MTH00224 241 SLMVLFEPNLF 251
CYTB MTH00053
cytochrome b; Provisional
 1-92 7.65e-29

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 105.94  E-value: 7.65e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67090400    1 LVEWAWGGFSVDNPTLTRFFALYFFLPFLIAGITLIHLTFLHESGSNNPLGIVSHCDKIPFHPYFSTKDILGFTLMFIPL 80
Cdd:MTH00053 161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                         90
                 ....*....|..
gi 67090400   81 LTLAFFSPNLLG 92
Cdd:MTH00053 241 SIIVFLFPYSLG 252
CYTB MTH00022
cytochrome b; Validated
 1-92 1.60e-28

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 105.17  E-value: 1.60e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67090400    1 LVEWAWGGFSVDNPTLTRFFALYFFLPFLIAGITLIHLTFLHESGSNNPLGIVSHCDKIPFHPYFSTKDILGFTLMFIPL 80
Cdd:MTH00022 159 IVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLL 238

                         90
                 ....*....|..
gi 67090400   81 LTLAFFSPNLLG 92
Cdd:MTH00022 239 SFIVYFAPNLLG 250
CYTB MTH00033
cytochrome b; Provisional
 1-84 1.24e-23

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 91.92  E-value: 1.24e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67090400    1 LVEWAWGGFSVDNPTLTRFFALYFFLPFLIAGITLIHLTFLHESGSNNPLGIVSHCDKIPFHPYFSTKDILGFTLMFIPL 80
Cdd:MTH00033 157 IVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVF 236


                 ....
gi 67090400   81 LTLA 84
Cdd:MTH00033 237 VIIG 240
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-90 9.08e-21

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 84.07  E-value: 9.08e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67090400   1 LVEWAWGGFSVDNPTLTRFFAL-YFFLPFLIAGITLIHLTFLHESGSNNPLGI----VSHCDKIPFHPYFSTKDILGFTL 75
Cdd:COG1290 171 LVTWLFGGEFPGDATLNRFFALhVLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFV 250

                        90
                ....*....|....*
gi 67090400  76 MFIPLLTLAFFSPNL 90
Cdd:COG1290 251 FLGVFALLAFFFPIN 265
CYTB MTH00046
cytochrome b; Validated
 7-91 9.89e-17

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 72.71  E-value: 9.89e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67090400    7 GGFSVDNPTLTRFFALYFFLPFLIAGITLIHLTFLHESGSNNPLGIV-SHCDKIPFHPYFSTKDILGFTLMFIPLLTLAF 85
Cdd:MTH00046 157 GGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSnGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLF 236


                 ....*.
gi 67090400   86 FSPNLL 91
Cdd:MTH00046 237 VSPDLV 242
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
1-92 2.84e-16

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 69.19  E-value: 2.84e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67090400     1 LVEWAWGGFSVDNPTLTRFFALYF-FLPFLIAGITLIHLTFLHESGSNNPLGIVSHCDKIPFHPYFSTKDILGFTLMFIP 79
Cdd:pfam13631  75 LVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVAL 154

                          90
                  ....*....|...
gi 67090400    80 LLTLAFFSPNLLG 92
Cdd:pfam13631 155 LIGLAQINPIWLG 167
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-47 5.01e-16

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 68.93  E-value: 5.01e-16
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*..
gi 67090400   1 LVEWAWGGFSVDNPTLTRFFALYFFLPFLIAGITLIHLTFLHESGSN 47
Cdd:cd00284 154 LVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00086
cytochrome b; Provisional
 1-92 6.30e-16

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 70.74  E-value: 6.30e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67090400    1 LVEWAWGGFSVDNPTLTRFFALYFFLPFLIAGITLIHLTFLHESGSNNPLGIVSHCDKIPFHPYFSTKDILGFTLMFIpL 80
Cdd:MTH00086 149 IVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLV-F 227

                         90
                 ....*....|..
gi 67090400   81 LTLAFFSPNLLG 92
Cdd:MTH00086 228 IIFSLFYPFNLG 239
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-45 9.53e-12

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 57.78  E-value: 9.53e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 67090400     1 LVEWAWGGFSVDNPTLTRFFALYFFLPFLIAGITLIHLTFLHESG 45
Cdd:pfam00033 145 LVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 48-92 4.56e-08

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 47.26  E-value: 4.56e-08
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 67090400  48 NPLGIVSHCDKIPFHPYFSTKDILGFTLMFIPLLTLAFFSPNLLG 92
Cdd:cd00290   1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLG 45
PRK03735 PRK03735
cytochrome b6; Provisional
 1-50 5.51e-05

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 39.69  E-value: 5.51e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 67090400    1 LVEWAWGGFSVDNPTLTRFFALY-FFLPFLIAGITLIHLTFLHESGSNNPL 50
Cdd:PRK03735 173 IKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 1-50 6.87e-05

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 39.32  E-value: 6.87e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 67090400    1 LVEWAWGGFSVDNPTLTRFFALY-FFLPFLIAGITLIHLTFLHESGSNNPL 50
Cdd:CHL00070 165 LVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH