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Conserved domains on  [gi|87083660|gb|ABD19348|]
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ATP synthase F0 subunit 6 (mitochondrion) [Daphnia pulex]

Protein Classification

ATP synthase F0 subunit 6( domain architecture ID 10009593)

ATP synthase F0 subunit 6 is part of the mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V), which produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 1-223 1.17e-92

ATP synthase F0 subunit 6; Provisional


:

Pssm-ID: 214441  Cd Length: 223  Bit Score: 270.89  E-value: 1.17e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660    1 MMANLFSIFDPSSMLTLPLNWLAVFVGLFALPWGFWISTNRAAKFFTLVSDQLHSEFKTL**************SLFLFI 80
Cdd:MTH00157   1 MMTNLFSIFDPSTSFNLSLNWLSTFLGLLFIPSSFWLIPSRYNILWNKILKTLHKEFKTLLGPKNKGSTLIFI-SLFSFI 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660   81 LFNNFFGLAPYVFTASSHLAMTLALAFPLWLAFILYGWLNHTTHMLAHLVPLGTPPVLMPFMVLIETVSNVIRPGTLAVR 160
Cdd:MTH00157  80 LFNNFLGLFPYIFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGTLAVR 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 87083660  161 LAANMIAGHLLLVLLGNQGPTLSSSLLSILLVTQILLLTLESAVAIIQSYVFAVLATLYSSEV 223
Cdd:MTH00157 160 LAANMIAGHLLLTLLGNTGPSLSSMILSILILIQILLLILESAVAIIQSYVFSVLSTLYSSEV 222
 
Name Accession Description Interval E-value
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 1-223 1.17e-92

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 270.89  E-value: 1.17e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660    1 MMANLFSIFDPSSMLTLPLNWLAVFVGLFALPWGFWISTNRAAKFFTLVSDQLHSEFKTL**************SLFLFI 80
Cdd:MTH00157   1 MMTNLFSIFDPSTSFNLSLNWLSTFLGLLFIPSSFWLIPSRYNILWNKILKTLHKEFKTLLGPKNKGSTLIFI-SLFSFI 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660   81 LFNNFFGLAPYVFTASSHLAMTLALAFPLWLAFILYGWLNHTTHMLAHLVPLGTPPVLMPFMVLIETVSNVIRPGTLAVR 160
Cdd:MTH00157  80 LFNNFLGLFPYIFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGTLAVR 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 87083660  161 LAANMIAGHLLLVLLGNQGPTLSSSLLSILLVTQILLLTLESAVAIIQSYVFAVLATLYSSEV 223
Cdd:MTH00157 160 LAANMIAGHLLLTLLGNTGPSLSSMILSILILIQILLLILESAVAIIQSYVFSVLSTLYSSEV 222
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 5-224 8.02e-43

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 143.89  E-value: 8.02e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660     5 LFSIFDPSS--MLTLPLNWLAVFVG----LFALPWGFWISTNRAAKFFTLVSDQLHSEFKTl**************SLFL 78
Cdd:TIGR01131   1 LFSQFDISPitLFSLTLLSLILLLSllifLISSSLSRWLIPSRWQNLMESIYEFVLSIVKS-QIGGKKGKFFPLIFTLFL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660    79 FILFNNFFGLAPYVFTASSHLAMTLALAFPLWLAFILYGWLNHTTHMLAHLVPLGTPPVLMPFMVLIETVSNVIRPGTLA 158
Cdd:TIGR01131  80 FILISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLS 159

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 87083660   159 VRLAANMIAGHLLLVLLGNQGPTLSSSLLSI-LLVTQILLLTLESAVAIIQSYVFAVLATLYSSEVV 224
Cdd:TIGR01131 160 VRLFANISAGHLLLTLLSGLLFSLMSSAIFAlLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDAL 226
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 87-221 4.23e-39

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 132.14  E-value: 4.23e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660  87 GLAPYVFTASSHLAMTLALAFPLWLAFILYGWLNHTTHMLAHLVPLGTPPVLMPFMVLIETVSNVIRPGTLAVRLAANMI 166
Cdd:cd00310  22 GLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPIELISELIRPLSLSVRLFANMF 101

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*
gi 87083660 167 AGHLLLVLLGNQGPTLSSSLLSILLVTQILLLTLESAVAIIQSYVFAVLATLYSS 221
Cdd:cd00310 102 AGHLLLALLSGLVPSLLSSVGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYIS 156
ATP-synt_A pfam00119
ATP synthase A chain;
87-221 2.85e-24

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 95.63  E-value: 2.85e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660    87 GLAPYVFTASSHLAMTLALAFPLWLAFILYGWLNH-TTHMLAHLVPLGTPPVLMPFMVLIETVSNVIRPGTLAVRLAANM 165
Cdd:pfam00119  78 PKSPGGFTVTADINVTLALALIVFLLVHYYGIKKHgLGGYFKKLFVPPVPLPLVPLLLPIEIISEFARPVSLSLRLFGNM 157

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 87083660   166 IAGHLLLVLLGNQGPTLSSSLLSILLVT---QILLLTLESAVAIIQSYVFAVLATLYSS 221
Cdd:pfam00119 158 LAGHLLLLLLAGLIFALLSAGFLLGVIPpllGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 87-224 6.56e-18

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 78.58  E-value: 6.56e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660  87 GLAPYVFTASSHLAMTLALAFPLWLAFILYGWLNH-TTHMLAHLVpLGTPPVLMPFMVLIETVSNVIRPGTLAVRLAANM 165
Cdd:COG0356  75 GLIPGLFPPTADINVTLALALIVFVLVHYYGIKKKgLGGYLKHLF-FPPFPWLAPLMLPIEIISELARPLSLSLRLFGNM 153

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 87083660 166 IAGHLLLVLLGNQGPtlSSSLLSILLVTQILLLTLESAVAIIQSYVFAVLATLYSSEVV 224
Cdd:COG0356 154 FAGHIILLLLAGLAP--FLLLGVLSLLLPVAWTAFELLVGFLQAYIFTMLTAVYISLAV 210
 
Name Accession Description Interval E-value
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 1-223 1.17e-92

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 270.89  E-value: 1.17e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660    1 MMANLFSIFDPSSMLTLPLNWLAVFVGLFALPWGFWISTNRAAKFFTLVSDQLHSEFKTL**************SLFLFI 80
Cdd:MTH00157   1 MMTNLFSIFDPSTSFNLSLNWLSTFLGLLFIPSSFWLIPSRYNILWNKILKTLHKEFKTLLGPKNKGSTLIFI-SLFSFI 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660   81 LFNNFFGLAPYVFTASSHLAMTLALAFPLWLAFILYGWLNHTTHMLAHLVPLGTPPVLMPFMVLIETVSNVIRPGTLAVR 160
Cdd:MTH00157  80 LFNNFLGLFPYIFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGTLAVR 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 87083660  161 LAANMIAGHLLLVLLGNQGPTLSSSLLSILLVTQILLLTLESAVAIIQSYVFAVLATLYSSEV 223
Cdd:MTH00157 160 LAANMIAGHLLLTLLGNTGPSLSSMILSILILIQILLLILESAVAIIQSYVFSVLSTLYSSEV 222
ATP6 MTH00176
ATP synthase F0 subunit 6; Provisional
 1-223 2.52e-47

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214449  Cd Length: 229  Bit Score: 155.58  E-value: 2.52e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660    1 MMANLFSIFDPSSMLTLP---LNWLAVFVGLFALPWGFWISTNRAAKFFTLVSDQlHSEFKTL**************SLF 77
Cdd:MTH00176   1 MLVDLFSSFDPPNKNIFSmisLSWITLLLFLLLMPSSVWFCPSKLQVFMLMFSTF-LPEMILRSNGSYILGSASIIISLF 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660   78 LFILFNNFFGLAPYVFTASSHLAMTLALAFPLWLAFILYGWLNHTTHMLAHLVPLGTPPVLMPFMVLIETVSNVIRPGTL 157
Cdd:MTH00176  80 ILVMSLNLSGLIPYVFTSTSHLVITLSLALPLWLGVILSGFINNFYSRLSHLVPQGTPPLLNPFLVLIELVSLLIRPLTL 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 87083660  158 AVRLAANMIAGHLLLVLLGNQGP---TLSSSLLSILLVTQILLLTLESAVAIIQSYVFAVLATLYSSEV 223
Cdd:MTH00176 160 AVRLAANLSAGHLLLGLLGAAMWgllPVSPLIGFLLLIVQILYFMFEIAVCMIQAYVFTLLLSLYLDEH 228
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 5-224 8.02e-43

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 143.89  E-value: 8.02e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660     5 LFSIFDPSS--MLTLPLNWLAVFVG----LFALPWGFWISTNRAAKFFTLVSDQLHSEFKTl**************SLFL 78
Cdd:TIGR01131   1 LFSQFDISPitLFSLTLLSLILLLSllifLISSSLSRWLIPSRWQNLMESIYEFVLSIVKS-QIGGKKGKFFPLIFTLFL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660    79 FILFNNFFGLAPYVFTASSHLAMTLALAFPLWLAFILYGWLNHTTHMLAHLVPLGTPPVLMPFMVLIETVSNVIRPGTLA 158
Cdd:TIGR01131  80 FILISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLS 159

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 87083660   159 VRLAANMIAGHLLLVLLGNQGPTLSSSLLSI-LLVTQILLLTLESAVAIIQSYVFAVLATLYSSEVV 224
Cdd:TIGR01131 160 VRLFANISAGHLLLTLLSGLLFSLMSSAIFAlLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDAL 226
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 87-221 4.23e-39

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 132.14  E-value: 4.23e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660  87 GLAPYVFTASSHLAMTLALAFPLWLAFILYGWLNHTTHMLAHLVPLGTPPVLMPFMVLIETVSNVIRPGTLAVRLAANMI 166
Cdd:cd00310  22 GLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPIELISELIRPLSLSVRLFANMF 101

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*
gi 87083660 167 AGHLLLVLLGNQGPTLSSSLLSILLVTQILLLTLESAVAIIQSYVFAVLATLYSS 221
Cdd:cd00310 102 AGHLLLALLSGLVPSLLSSVGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYIS 156
ATP6 MTH00179
ATP synthase F0 subunit 6; Provisional
 1-222 2.72e-35

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177230  Cd Length: 227  Bit Score: 124.68  E-value: 2.72e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660    1 MMANLFSIFDPSSMLTLPLNWLAVFVGLFALP-WGFWISTNRAAKFFTLVSDQLHSEFkTL**************SLFLF 79
Cdd:MTH00179   1 MMLSMFDQFESPSLLGIPLLALALLLPWLLFPsLTNRWLNNRLSTLQSWFFGSFTFQL-MQPINKKGHKWAVLFLSLMLF 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660   80 ILFNNFFGLAPYVFTASSHLAMTLALAFPLWLAFILYGWLNHTTHMLAHLVPLGTPPVLMPFMVLIETVSNVIRPGTLAV 159
Cdd:MTH00179  80 LLTLNLLGLLPYTFTPTTQLSLNLGLALPLWLGTVLYGLFNQPTIALAHLLPEGTPTPLIPMLVWIETISLLIRPLALGV 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 87083660  160 RLAANMIAGHLLLVLLGNQGPTLSSSLLSILLVTQ---ILLLTLESAVAIIQSYVFAVLATLYSSE 222
Cdd:MTH00179 160 RLTANITAGHLLMHLISSAVFVLMNFMGMVALLTLlvlFLLTLLEVAVAMIQAYVFVLLLSLYLQE 225
ATP6 MTH00173
ATP synthase F0 subunit 6; Provisional
 1-222 1.03e-34

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214448  Cd Length: 231  Bit Score: 123.05  E-value: 1.03e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660    1 MMANLFSIFDP---SSMLTLPLNWLAVFVGLFALPWGFWISTNRAAKFFTLVSDQLHSeFKTL**************SLF 77
Cdd:MTH00173   1 MMVDLFSSFDDhnsSFSSLSFLMWLLSLMSLFFFSSSVWVSSSNLSSVFKLFVLTVSS-QVTRSSGLNLGGFSLLLSSLF 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660   78 LFILFNNFFGLAPYVFTASSHLAMTLALAFPLWLAFILYGWLNHTTHMLAHLVPLGTPPVLMPFMVLIETVSNVIRPGTL 157
Cdd:MTH00173  80 LFLISLNLSGLLPFVFSVTSHLAFTFSLALPLWLSLILSGLFYNPSKSLAGLVPAGAPAGLNPFLVLIETVSILIRPLTL 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 87083660  158 AVRLAANMIAGHLLLVLLGNQGPTLS----SSLLSILLVTQILLLTLESAVAIIQSYVFAVLATLYSSE 222
Cdd:MTH00173 160 TVRLLANISAGHIVLTLIGNYLSSSLfsssVVSLLLVLLIQVGYFIFEVAVMLIQAYIFTLLIKLYSDE 228
ATP6 MTH00005
ATP synthase F0 subunit 6; Provisional
 1-222 2.51e-34

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 164583  Cd Length: 231  Bit Score: 122.15  E-value: 2.51e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660    1 MMANLFSIFDPSSMLTL-----PLNWLAVFVGLFALPWGFWISTNRAAKFFTLVSDQLHSEFkTL**************S 75
Cdd:MTH00005   1 MLTDIFSSFDPATNSLFnnlssTAFWAFNFSIILLLSSSFWITPNRLSSIMSPPKSTMHTQL-SRTFGKHLKGFSSLISA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660   76 LFLFILFNNFFGLAPYVFTASSHLAMTLALAFPLWLAFILYGWLNHTTHMLAHLVPLGTPPVLMPFMVLIETVSNVIRPG 155
Cdd:MTH00005  80 LFTMIILMNLSGLLPYVFSTSSHLIFTLTLGLPLWLSLIMSSVTFSPKKFAAHLLPGGAPDWLNPFLVLIETISILVRPI 159

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660  156 TLAVRLAANMIAGHLLLVLLG---NQGPTLSSSLLSILLVTQILLLTLESAVAIIQSYVFAVLATLYSSE 222
Cdd:MTH00005 160 TLSFRLAANMSAGHIVLSLIGiyaASALFSSISSTILLILTQMGYILFEVGICLIQAYIFCLLLSLYSDD 229
ATP6 MTH00120
ATP synthase F0 subunit 6; Provisional
 87-222 7.61e-34

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177181  Cd Length: 227  Bit Score: 120.70  E-value: 7.61e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660   87 GLAPYVFTASSHLAMTLALAFPLWLAFILYGWLNHTTHMLAHLVPLGTPPVLMPFMVLIETVSNVIRPGTLAVRLAANMI 166
Cdd:MTH00120  87 GLLPYTFTPTTQLSMNMALAIPLWLATVLTGLRNQPTTSLAHLLPEGTPTPLIPALILIETISLLIRPLALGVRLTANLT 166

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 87083660  167 AGHLLLVLLGNQGPTLSSSLLSILLVTQILLL---TLESAVAIIQSYVFAVLATLYSSE 222
Cdd:MTH00120 167 AGHLLIQLISTATLNLLPTMPTLSLLTLIILLlltILELAVAMIQAYVFVLLLSLYLQE 225
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 87-224 4.47e-31

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 113.81  E-value: 4.47e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660   87 GLAPYVFTASSHLAMTLALAFPLWLAFILYGWLNHTTHMLAHLVPLGTPPVLMPFMVLIETVSNVIRPGTLAVRLAANMI 166
Cdd:MTH00132  87 GLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVRLTANLT 166

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 87083660  167 AGHLLLVLLGNQGPTLSSSLLSILLVTQILLL---TLESAVAIIQSYVFAVLATLYSSEVV 224
Cdd:MTH00132 167 AGHLLIQLIATAAFVLLPLMPTVAILTATLLFlltLLEVAVAMIQAYVFVLLLSLYLQENV 227
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 87-219 2.84e-30

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 111.58  E-value: 2.84e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660   87 GLAPYVFTASSHLAMTLALAFPLWLAFILYGWLNHTTHMLAHLVPLGTPPVLMPFMVLIETVSNVIRPGTLAVRLAANMI 166
Cdd:MTH00101  86 GLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVRLTANIT 165

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 87083660  167 AGHLLLVLLGNQGPTLSSSLLSILLVTQI---LLLTLESAVAIIQSYVFAVLATLY 219
Cdd:MTH00101 166 AGHLLIHLIGGATLALMSISTTTALITFIiliLLTILEFAVALIQAYVFTLLVSLY 221
ATP6 MTH00035
ATP synthase F0 subunit 6; Validated
 3-222 2.00e-28

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177110  Cd Length: 229  Bit Score: 106.98  E-value: 2.00e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660    3 ANLFSIFDPSSMLTLPLNWLAVFvglFALPWGFWISTNRAA--KFFTLVSDQLHSEFKTL*********--*****SLFL 78
Cdd:MTH00035   5 NSIFGQFSPDTILFIPLTLLSSV---IALSWLFFINPTNWLpsRSQSIWLTFRQEILKLIFQNTNPNTApwAGLLTTVFI 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660   79 FILFNNFFGLAPYVFTASSHLAMTLALAFPLWLAFILYGWLNHTTHMLAHLVPLGTPPVLMPFMVLIETVSNVIRPGTLA 158
Cdd:MTH00035  82 LILSINVLGLFPYAFTSTSHISLTYSLGIPLWMSVNILGFYLAFNSRLSHLVPQGTPSFLIPLMVWIETLSLFAQPIALG 161

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 87083660  159 VRLAANMIAGHLLLVLLGNQGPTL--SSSLLSILLVTQILLLTLESAVAIIQSYVFAVLATLYSSE 222
Cdd:MTH00035 162 LRLAANLTAGHLLIFLLSTAIWELsnSPLISIITLIIFFLLFILEIGVACIQAYVFTALVHFYLEQ 227
ATP6 MTH00073
ATP synthase F0 subunit 6; Provisional
 87-222 3.06e-28

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177144  Cd Length: 227  Bit Score: 106.20  E-value: 3.06e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660   87 GLAPYVFTASSHLAMTLALAFPLWLAFILYGWLNHTTHMLAHLVPLGTPPVLMPFMVLIETVSNVIRPGTLAVRLAANMI 166
Cdd:MTH00073  87 GLLPYTFTPTTQLSLNLGLAVPLWLATVLIGLRNQPTASLGHLLPEGTPTLLIPILIIIETISLFIRPLALGVRLTANLT 166

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 87083660  167 AGHLLLVLLGNQGPTLSSSLLSILLVTQI--LLLT-LESAVAIIQSYVFAVLATLYSSE 222
Cdd:MTH00073 167 AGHLLIQLISTATLVLLPLMPTVSILTMIvlFLLTlLEIAVAMIQAYVFVLLLSLYLQE 225
ATP-synt_A pfam00119
ATP synthase A chain;
87-221 2.85e-24

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 95.63  E-value: 2.85e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660    87 GLAPYVFTASSHLAMTLALAFPLWLAFILYGWLNH-TTHMLAHLVPLGTPPVLMPFMVLIETVSNVIRPGTLAVRLAANM 165
Cdd:pfam00119  78 PKSPGGFTVTADINVTLALALIVFLLVHYYGIKKHgLGGYFKKLFVPPVPLPLVPLLLPIEIISEFARPVSLSLRLFGNM 157

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 87083660   166 IAGHLLLVLLGNQGPTLSSSLLSILLVT---QILLLTLESAVAIIQSYVFAVLATLYSS 221
Cdd:pfam00119 158 LAGHLLLLLLAGLIFALLSAGFLLGVIPpllGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
 87-219 3.61e-22

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214447  Cd Length: 232  Bit Score: 90.49  E-value: 3.61e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660   87 GLAPYVFTASSHLAMTLALAFPLWLAFILYGWLNHTTHMLAHLVPLGTPPVLMPFMVLIETVSNVIRPGTLAVRLAANMI 166
Cdd:MTH00172  89 GLFPYVFTPTTHIVVTLGLSFSIIIGVTLAGFWRFKWDFFSILMPSGAPLGLAPLLVLIETVSYISRAISLGVRLAANLS 168

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 87083660  167 AGHLLLVLLGNQG---PTLSSSLLSILLVTQILLLTLESAVAIIQSYVFAVLATLY 219
Cdd:MTH00172 169 AGHLLFAILAGFGfnmLCASGFLSLFPLLIMVFITLLEIAVAVIQAYVFCLLTTIY 224
ATP6 MTH00175
ATP synthase F0 subunit 6; Provisional
 87-219 4.86e-22

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177228  Cd Length: 244  Bit Score: 90.45  E-value: 4.86e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660   87 GLAPYVFTASSHLAMTLALAFPLWLAFILYGWLNHTTHMLAHLVPLGTPPVLMPFMVLIETVSNVIRPGTLAVRLAANMI 166
Cdd:MTH00175 100 GLFPYVFTPTAHIIITFGLSLSIIIAVTLLGFLTFKWNFLSILMPGGAPLVLAPFLVLIETLSYLIRAISLGVRLAANIS 179

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 87083660  167 AGHLLLVLLGNQGPTLSSSLLSILLVTQILLLT----LESAVAIIQSYVFAVLATLY 219
Cdd:MTH00175 180 AGHLLFAILSGFAFNMLSNGLIILSLFPMLIMIfitlLEMAVAVIQAYVFCLLTTIY 236
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 87-224 6.56e-18

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 78.58  E-value: 6.56e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660  87 GLAPYVFTASSHLAMTLALAFPLWLAFILYGWLNH-TTHMLAHLVpLGTPPVLMPFMVLIETVSNVIRPGTLAVRLAANM 165
Cdd:COG0356  75 GLIPGLFPPTADINVTLALALIVFVLVHYYGIKKKgLGGYLKHLF-FPPFPWLAPLMLPIEIISELARPLSLSLRLFGNM 153

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 87083660 166 IAGHLLLVLLGNQGPtlSSSLLSILLVTQILLLTLESAVAIIQSYVFAVLATLYSSEVV 224
Cdd:COG0356 154 FAGHIILLLLAGLAP--FLLLGVLSLLLPVAWTAFELLVGFLQAYIFTMLTAVYISLAV 210
PRK05815 PRK05815
F0F1 ATP synthase subunit A; Validated
 91-224 1.65e-14

F0F1 ATP synthase subunit A; Validated


Pssm-ID: 235617  Cd Length: 227  Bit Score: 69.82  E-value: 1.65e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660   91 YVFTASSHLAMTLALAFPLWLAFILYG-WLNHTTHMLAHLVPlgtppVLMPFMVLIETVSNVIRPGTLAVRLAANMIAGH 169
Cdd:PRK05815  95 LLFPPTADINVTLALALIVFVLVIYYGiKKKGLGGYLKEFYL-----QPHPLLLPIEIISEFSRPISLSLRLFGNMLAGE 169

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 87083660  170 LLLVLLGNQGPTLSSSLLSILLVTqILLLTLESAVAIIQSYVFAVLATLYSSEVV 224
Cdd:PRK05815 170 LILALIALLGGAGLLLALAPLILP-VAWTIFEIFVGTLQAYIFMMLTIVYISMAV 223
ATP6 MTH00174
ATP synthase F0 subunit 6; Provisional
 87-224 6.58e-13

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 133799  Cd Length: 252  Bit Score: 65.73  E-value: 6.58e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660   87 GLAPYVFTASSHLAMTLALAFPLWLAFILYGWLNHTTHMLAHLVPLGTPPVLMPFMVLIETVSNVIRPGTLAVRLAANMI 166
Cdd:MTH00174 108 GLFPYVFTPTVHMVITLGLSFAIIVGTTLAGLITFRFNFFSILMPQGAPLALAPLLTIIETLSYISRAISLGVRLAANIS 187

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 87083660  167 AGHLLLVLLGNQG----PTLSSSLLSILLVTQILLLTLESAVAIIQSYVFAVLATLYSSEVV 224
Cdd:MTH00174 188 SGHLLFSIIASFAwkmiNTGILIGSFVPFAILIFVTILEMAVAIIQAYVFTLLTIVYLRDTV 249
PRK13417 PRK13417
F0F1 ATP synthase subunit A; Provisional
 94-219 4.61e-07

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237380  Cd Length: 352  Bit Score: 49.50  E-value: 4.61e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660   94 TASSHLAMTLALAFPLWLAFILYGWLNHTTHMLAHLVPLGTPPVLMPFMVLIE-TVSNVIRPGTLAVRLAANMIAGH-LL 171
Cdd:PRK13417 217 TVTGDISVTMTLALLTMFLIYGAGFSYQGPKFIWHSVPNGVPLLLYPIMWPLEfIVSPMAKTFALTVRLLANMTAGHvII 296

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 87083660  172 LVLLGNQGPTLSSSLLSILLVTQILLLTLESAVAIIQSYVFAVLATLY 219
Cdd:PRK13417 297 LALMGFIFQFQSWGIVPVSVIGSGLIYVLEIFVAFLQAYIFVLLTSLF 344
PRK13419 PRK13419
F0F1 ATP synthase subunit A; Provisional
 87-219 1.94e-06

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237381  Cd Length: 342  Bit Score: 47.43  E-value: 1.94e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660   87 GLAPYVFTASSHLAMTLALAFPLWL-----AFILYGWLNHTTHMLAhlvplGTPPVLMPFMVLIETVSNVIRPGTLAVRL 161
Cdd:PRK13419 188 GLVPYGATATGNINVTLTLAVFTFFitqyaAIKAHGIKGYLAHLTG-----GTHWSLWIIMIPIEFIGLFTKPFALTVRL 262

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660  162 AANMIAGHL-LLVLLGNQGPTLSSSLLSILLVT-QILLLTLESAVAIIQSYVFAVLATLY 219
Cdd:PRK13419 263 FANMTAGHIvILSLIFISFILKSYIVAVAVSVPfAIFIYLLELFVAFLQAYIFTMLSALF 322
ATP6 MTH00087
ATP synthase F0 subunit 6; Provisional
 87-222 1.13e-05

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177152  Cd Length: 195  Bit Score: 44.58  E-value: 1.13e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660   87 GLAPYVFTASSHLAMTLALAFPLWLAFILYgwLNHTTHMLAHLVPLGTPPVLMPF-MVLIETVSNVIRPGTLAVRLAANM 165
Cdd:MTH00087  69 GLFPYSFSPCGMVEFTFLYALVAWLSTFLS--FLSKSEKFSVYLSKGSDSFLKTFsMLFVEIVSELSRPLALTLRLTVNL 146

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 87083660  166 IAGHLLLVLLGNQGPTLSSSLlsillvtqILLLTLESAVAIIQSYVFAVLATLYSSE 222
Cdd:MTH00087 147 MVGHLISSLLNFLGEKYVWLS--------ILAIMMECFVAFIQSYIFSRLIYLYLNE 195
ATP6 MTH00050
ATP synthase F0 subunit 6; Validated
 90-177 5.76e-05

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177125  Cd Length: 170  Bit Score: 42.18  E-value: 5.76e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083660   90 PYVFTASSHLAMTLALAFPLWLAFILYGWLNHTTHMLAHLVPLGTPPVLMPFMVLIETVSNVIRPGTLAVRLAANMIAGH 169
Cdd:MTH00050  43 PYIYSPFLFVVFLFVVVFPLFISLFLSRVFDSLNEFFSSFVPVGTPLYICPFVCIAETISYIIRPVVLILRPFINISLGC 122


                 ....*...
gi 87083660  170 LLLVLLGN 177
Cdd:MTH00050 123 FGGVALGN 130
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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