|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-139 |
1.16e-98 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 287.06 E-value: 1.16e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87330727 1 LSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDS 80
Cdd:MTH00156 140 LSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDL 219
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 87330727 81 ITFVIMTSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 139
Cdd:MTH00156 220 VGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 278
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-137 |
3.36e-45 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 151.10 E-value: 3.36e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87330727 1 LSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFH-FVLPFVIAAMAAIHLFFLHQTGSNNPIG----LNSNIDKIPFHPYF 75
Cdd:COG1290 161 FGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYY 240
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 87330727 76 TFKDSITFVIMtsLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPN 137
Cdd:COG1290 241 TVKDGFGFFVF--LGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPG 300
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
58-139 |
9.38e-30 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 105.04 E-value: 9.38e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87330727 58 NPIGLNSNIDKIPFHPYFTFKDSITFVIMTSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPN 137
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
..
gi 87330727 138 KL 139
Cdd:cd00290 81 KL 82
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
1-104 |
7.08e-28 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 100.78 E-value: 7.08e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87330727 1 LSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHF-VLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKD 79
Cdd:pfam13631 65 LSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKM 144
|
90 100
....*....|....*....|....*
gi 87330727 80 SITFVIMTSLLILLCLINPYILGDP 104
Cdd:pfam13631 145 LLFFLITVALLIGLAQINPIWLGGP 169
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
88-139 |
5.05e-07 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 46.33 E-value: 5.05e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 87330727 88 SLLILLCLINPYILGDPdnfvpANPLVTPVHIQPEWYFLFAYAILRSIPNKL 139
Cdd:TIGR01156 49 ACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKL 95
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-139 |
1.16e-98 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 287.06 E-value: 1.16e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87330727 1 LSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDS 80
Cdd:MTH00156 140 LSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDL 219
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 87330727 81 ITFVIMTSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 139
Cdd:MTH00156 220 VGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 278
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-139 |
9.57e-85 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 252.14 E-value: 9.57e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87330727 1 LSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDS 80
Cdd:MTH00191 147 LSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDI 226
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 87330727 81 ITFVIMTSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 139
Cdd:MTH00191 227 LGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKL 285
|
|
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-139 |
2.77e-84 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 251.36 E-value: 2.77e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87330727 1 LSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDS 80
Cdd:MTH00119 151 LSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDL 230
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 87330727 81 ITFVIMTSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 139
Cdd:MTH00119 231 LGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKL 289
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-139 |
4.77e-84 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 250.59 E-value: 4.77e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87330727 1 LSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDS 80
Cdd:MTH00145 151 LSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDL 230
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 87330727 81 ITFVIMTSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 139
Cdd:MTH00145 231 VGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKL 289
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-139 |
7.57e-84 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 250.37 E-value: 7.57e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87330727 1 LSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDS 80
Cdd:MTH00074 151 LSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDL 230
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 87330727 81 ITFVIMTSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 139
Cdd:MTH00074 231 LGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKL 289
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-139 |
3.62e-83 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 248.41 E-value: 3.62e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87330727 1 LSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDS 80
Cdd:MTH00131 150 LSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDL 229
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 87330727 81 ITFVIMTSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 139
Cdd:MTH00131 230 LGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKL 288
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-139 |
1.26e-80 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 241.85 E-value: 1.26e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87330727 1 LSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDS 80
Cdd:MTH00100 150 LSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDI 229
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 87330727 81 ITFVIMTSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 139
Cdd:MTH00100 230 LGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKL 288
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-139 |
9.37e-79 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 237.27 E-value: 9.37e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87330727 1 LSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDS 80
Cdd:MTH00016 151 LSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDI 230
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 87330727 81 ITFVIMTSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 139
Cdd:MTH00016 231 VGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKL 289
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-139 |
1.83e-75 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 228.82 E-value: 1.83e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87330727 1 LSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDS 80
Cdd:MTH00034 150 VSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDL 229
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 87330727 81 ITFVIMTSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 139
Cdd:MTH00034 230 VGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKL 288
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-139 |
5.38e-66 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 204.55 E-value: 5.38e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87330727 1 LSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDS 80
Cdd:MTH00022 149 LSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDW 228
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 87330727 81 ITFVIMTSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 139
Cdd:MTH00022 229 YGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKL 287
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-139 |
6.11e-66 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 204.38 E-value: 6.11e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87330727 1 LSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDS 80
Cdd:MTH00224 151 FSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDA 230
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 87330727 81 ITFVIMTSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 139
Cdd:MTH00224 231 LGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKL 289
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-139 |
5.18e-65 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 202.24 E-value: 5.18e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87330727 1 LSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDS 80
Cdd:MTH00053 151 LSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDL 230
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 87330727 81 ITFVIMTSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 139
Cdd:MTH00053 231 YGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKL 289
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-139 |
6.10e-52 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 167.81 E-value: 6.10e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87330727 1 LSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDS 80
Cdd:MTH00086 139 LSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDA 218
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 87330727 81 ITFVIMTsLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 139
Cdd:MTH00086 219 YNIIFWL-VFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKV 276
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-139 |
2.03e-46 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 154.33 E-value: 2.03e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87330727 1 LSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDS 80
Cdd:MTH00033 147 VSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDI 226
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 87330727 81 ITFVIMTSLLILLClINPYI---LGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 139
Cdd:MTH00033 227 LGFLILFGVFVIIG-IEPRIetlLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKL 287
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-137 |
3.36e-45 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 151.10 E-value: 3.36e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87330727 1 LSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFH-FVLPFVIAAMAAIHLFFLHQTGSNNPIG----LNSNIDKIPFHPYF 75
Cdd:COG1290 161 FGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYY 240
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 87330727 76 TFKDSITFVIMtsLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPN 137
Cdd:COG1290 241 TVKDGFGFFVF--LGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPG 300
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
1-139 |
2.03e-36 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 127.41 E-value: 2.03e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87330727 1 LSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNI-DKIPFHPYFTFKD 79
Cdd:MTH00046 141 VDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKD 220
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 87330727 80 SITFVIMTSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 139
Cdd:MTH00046 221 LFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKI 280
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
58-139 |
9.38e-30 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 105.04 E-value: 9.38e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87330727 58 NPIGLNSNIDKIPFHPYFTFKDSITFVIMTSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPN 137
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
..
gi 87330727 138 KL 139
Cdd:cd00290 81 KL 82
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
1-104 |
7.08e-28 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 100.78 E-value: 7.08e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87330727 1 LSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHF-VLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKD 79
Cdd:pfam13631 65 LSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKM 144
|
90 100
....*....|....*....|....*
gi 87330727 80 SITFVIMTSLLILLCLINPYILGDP 104
Cdd:pfam13631 145 LLFFLITVALLIGLAQINPIWLGGP 169
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-57 |
4.35e-20 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 81.65 E-value: 4.35e-20
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 87330727 1 LSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSN 57
Cdd:cd00284 144 FSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-55 |
5.40e-18 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 75.88 E-value: 5.40e-18
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 87330727 1 LSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTG 55
Cdd:pfam00033 135 LSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
109-139 |
9.57e-16 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 67.50 E-value: 9.57e-16
10 20 30
....*....|....*....|....*....|.
gi 87330727 109 PANPLVTPVHIQPEWYFLFAYAILRSIPNKL 139
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKL 31
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
84-139 |
6.76e-09 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 51.33 E-value: 6.76e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 87330727 84 VIMTS--LLILLCLINPYILGDPdnfvpANPLVTPVHIQPEWYFLFAYAILRSIPNKL 139
Cdd:COG5679 44 VILGTiaLCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKL 96
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
88-139 |
1.04e-07 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 48.07 E-value: 1.04e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 87330727 88 SLLILLCLINPYILGDPdnfvpANPLVTPVHIQPEWYFLFAYAILRSIPNKL 139
Cdd:CHL00058 49 ACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKL 95
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
88-139 |
5.05e-07 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 46.33 E-value: 5.05e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 87330727 88 SLLILLCLINPYILGDPdnfvpANPLVTPVHIQPEWYFLFAYAILRSIPNKL 139
Cdd:TIGR01156 49 ACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKL 95
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
2-60 |
6.64e-06 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 43.93 E-value: 6.64e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 87330727 2 SAIPYLGTDLVQWVWGGFAVDNATLNRFFTFH-FVLPFVIAAMAAIHLFFLHQTGSNNPI 60
Cdd:PRK03735 164 EAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
|
|
| petB |
CHL00070 |
cytochrome b6 |
3-60 |
1.11e-05 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 43.17 E-value: 1.11e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 87330727 3 AIPYLGTDLVQWVWGGFAVDNATLNRFFTFH-FVLPFVIAAMAAIHLFFLHQTGSNNPI 60
Cdd:CHL00070 157 AIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
|
|
|