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Conserved domains on  [gi|108742982|gb|ABG02130|]
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NADH dehydrogenase subunit 4 (mitochondrion) [Microcebus sp. ANT5.1]

Protein Classification

NADH dehydrogenase subunit 4( domain architecture ID 11475903)

NADH dehydrogenase subunit 4 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
1-459 0e+00

NADH dehydrogenase subunit 4; Provisional


:

Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 790.24  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982   1 MLKIIMPTIMLFPVIWYSNSSMIWINMTSYSLMISLMTLPLLNQTESNSNNFSLTFFSDSLSSPLLMLTVWLLPLMIMAS 80
Cdd:MTH00110   1 MLKIIIPTIMLIPLTWLSKNNMIWINTTTYSLLISLISLLLLNQPNDNSLNFSLLFFSDSLSTPLLILTTWLLPLMLMAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  81 QHHLTKESLMRKKLYLSMLIFLQMFLIMTFTATELILFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPL 160
Cdd:MTH00110  81 QHHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 161 LVALIYVQKSLGSLNYLVMNMWSQDMSSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGG 240
Cdd:MTH00110 161 LVALLYIQNNLGSLNFLLLQLWAQPLPNSWSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 241 YGMLRLTMILNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHG 320
Cdd:MTH00110 241 YGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 321 LTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLASLTNLALPPFINLIGELFVIMASFSWSNFTIIITGFNM 400
Cdd:MTH00110 321 LTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNM 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 108742982 401 LITALYSLYMLTMTQRGKFTYHIHNIKPSYTRENTLMSMHMLPLIMLTFNPKIIMGLTY 459
Cdd:MTH00110 401 LITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGPTY 459
 
Name Accession Description Interval E-value
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
1-459 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 790.24  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982   1 MLKIIMPTIMLFPVIWYSNSSMIWINMTSYSLMISLMTLPLLNQTESNSNNFSLTFFSDSLSSPLLMLTVWLLPLMIMAS 80
Cdd:MTH00110   1 MLKIIIPTIMLIPLTWLSKNNMIWINTTTYSLLISLISLLLLNQPNDNSLNFSLLFFSDSLSTPLLILTTWLLPLMLMAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  81 QHHLTKESLMRKKLYLSMLIFLQMFLIMTFTATELILFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPL 160
Cdd:MTH00110  81 QHHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 161 LVALIYVQKSLGSLNYLVMNMWSQDMSSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGG 240
Cdd:MTH00110 161 LVALLYIQNNLGSLNFLLLQLWAQPLPNSWSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 241 YGMLRLTMILNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHG 320
Cdd:MTH00110 241 YGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 321 LTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLASLTNLALPPFINLIGELFVIMASFSWSNFTIIITGFNM 400
Cdd:MTH00110 321 LTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNM 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 108742982 401 LITALYSLYMLTMTQRGKFTYHIHNIKPSYTRENTLMSMHMLPLIMLTFNPKIIMGLTY 459
Cdd:MTH00110 401 LITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGPTY 459
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
59-458 5.85e-85

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 268.87  E-value: 5.85e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  59 DSLSSPLLMLTVWLLPLMIMASQHHLTKeslmRKKLYLSMLIFLQMFLIMTFTATELILFYILFESTLIPTLIIITRWGN 138
Cdd:COG1008   81 DGISLPLVLLTALLTPLAILASWNEIKK----RPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLIGIWGG 156
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 139 QtERLNAGLYFLFYTLIGSLPLLVALIYVqkslgslnYLVMNMWSQDMSSL-------WSSNLLWLACIMAFMVKMPLYG 211
Cdd:COG1008  157 E-RRIYAAIKFFLYTLAGSLLMLVAILAL--------YFLAGALTFDIAELaaaplplTAQLLLFLAFFIAFAVKVPMFP 227
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 212 LHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNP-TTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSS 290
Cdd:COG1008  228 FHTWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFALPLFPeASAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSS 307
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 291 VSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLASLTNLALP 370
Cdd:COG1008  308 VSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLP 387
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 371 PFINLIGELFVIMASFSWSNFTIIITGFNMLITALYSLYMLTMTQRGKFTYHIHNIKPSYTRENTLMSMHMLPLIMLTFN 450
Cdd:COG1008  388 GTSGFVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMYQRVFFGPLKEELAELPDLNPRELAVLAPLAALILLLGLY 467

                 ....*...
gi 108742982 451 PKIIMGLT 458
Cdd:COG1008  468 PQPLLDLI 475
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
59-459 1.48e-75

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 244.46  E-value: 1.48e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982   59 DSLSSPLLMLTVWLLPLMIMASQHHLTKeslmRKKLYLSMLIFLQMFLIMTFTATELILFYILFESTLIPTLIIITRWGN 138
Cdd:TIGR01972  76 DGISLLLVLLTALLTLLAILASWESIQK----RVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGG 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  139 QTeRLNAGLYFLFYTLIGSLPLLVALIY-VQKSLGSLNYLVMNmwSQDMSSLWSSnLLWLACIMAFMVKMPLYGLHLWLP 217
Cdd:TIGR01972 152 PN-RIYAAMKFFLYTLAGSLLMLLAILGlYFLGGGTFDLLELL--NLPLPFGVQT-WLFLAFFIAFAVKVPLFPLHTWLP 227
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  218 KAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNP-TTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 296
Cdd:TIGR01972 228 DAHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGF 307
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  297 VIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLASLTNLALPPFINLI 376
Cdd:TIGR01972 308 VLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFV 387
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  377 GELFVIMASFSWSNFTIIITGFNMLITALYSLYMLTMTQRGKFTYHIHNIKPS-YTRENTLMSMHMLPLIMLTFNPKIIM 455
Cdd:TIGR01972 388 GEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLYKRVFFGELSNPEVAEFPDlNGREIAVLAPLVVLILFLGLYPNPLL 467

                  ....
gi 108742982  456 GLTY 459
Cdd:TIGR01972 468 DLTE 471
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
112-398 2.04e-63

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 206.78  E-value: 2.04e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  112 ATELILFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQKSLGSLNYLVMNMWSQDMSSLWS 191
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNSSG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  192 SNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNPTTKIMAYPFIMLCLWGMIM 271
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  272 TSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANS-NYERIHSRTMLLARGLQA 350
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSvIYRRVHTRNIRDYGGLAK 240
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 108742982  351 FLPLMATWWLLASLTNLALPPFINLIGELFVIMASFSWSNFTIIITGF 398
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGV 288
 
Name Accession Description Interval E-value
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
1-459 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 790.24  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982   1 MLKIIMPTIMLFPVIWYSNSSMIWINMTSYSLMISLMTLPLLNQTESNSNNFSLTFFSDSLSSPLLMLTVWLLPLMIMAS 80
Cdd:MTH00110   1 MLKIIIPTIMLIPLTWLSKNNMIWINTTTYSLLISLISLLLLNQPNDNSLNFSLLFFSDSLSTPLLILTTWLLPLMLMAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  81 QHHLTKESLMRKKLYLSMLIFLQMFLIMTFTATELILFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPL 160
Cdd:MTH00110  81 QHHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 161 LVALIYVQKSLGSLNYLVMNMWSQDMSSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGG 240
Cdd:MTH00110 161 LVALLYIQNNLGSLNFLLLQLWAQPLPNSWSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 241 YGMLRLTMILNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHG 320
Cdd:MTH00110 241 YGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 321 LTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLASLTNLALPPFINLIGELFVIMASFSWSNFTIIITGFNM 400
Cdd:MTH00110 321 LTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNM 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 108742982 401 LITALYSLYMLTMTQRGKFTYHIHNIKPSYTRENTLMSMHMLPLIMLTFNPKIIMGLTY 459
Cdd:MTH00110 401 LITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGPTY 459
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
1-456 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 623.37  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982   1 MLKIIMPTIMLFPVIWYSNSSMIWINMTSYSLMISLMTLPLLNQTESNSNNFSLTFFSDSLSSPLLMLTVWLLPLMIMAS 80
Cdd:MTH00124   1 MLKIILPTIMLIPTTLLSKPKFLWTNTTTYSLLIALLSLQWLKPPYYPTKNLTQWLGIDQISAPLLVLSCWLLPLMILAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  81 QHHLTKESLMRKKLYLSMLIFLQMFLIMTFTATELILFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPL 160
Cdd:MTH00124  81 QNHLQHEPLQRKRTFLTTLILLQTFLILAFSATELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLISSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 161 LVALIYVQKSLGSLNYLVMNMWSQDMSSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGG 240
Cdd:MTH00124 161 LIAILYLHNQTGTLSLPMLQLTHPTLTNSWTNLLLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 241 YGMLRLTMILNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHG 320
Cdd:MTH00124 241 YGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 321 LTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLASLTNLALPPFINLIGELFVIMASFSWSNFTIIITGFNM 400
Cdd:MTH00124 321 LTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLAT 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 108742982 401 LITALYSLYMLTMTQRGKFTYHIHNIKPSYTRENTLMSMHMLPLIMLTFNPKIIMG 456
Cdd:MTH00124 401 LITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISG 456
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
1-457 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 580.72  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982   1 MLKIIMPTIMLFPVIWYSNSSMIWINMTSYSLMISLMTLPLLNQTESNSNNFSLTFFSDSLSSPLLMLTVWLLPLMIMAS 80
Cdd:MTH00068   1 MLKIIIPTLMLLPTTWLSPKKWLWTLTTTNSLIIAFLSLMWFNLPSETMNFTNKYFGIDQISSPLLILTCWLLPLMILAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  81 QHHLTKESLMRKKLYLSMLIFLQMFLIMTFTATELILFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPL 160
Cdd:MTH00068  81 QNHLKNEPINRQRTYISMLIILQLTLILAFSATELILFYIFFEATLIPTLIIITRWGNQEERLNAGTYFLFYTLAGSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 161 LVALIYVQKSLGSLNYLVMNMWSQDMSSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGG 240
Cdd:MTH00068 161 LIALLILQNSLGSLSLILLELMSPMQLMTYTNKIWWLACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 241 YGMLRLTMILNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHG 320
Cdd:MTH00068 241 YGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 321 LTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLASLTNLALPPFINLIGELFVIMASFSWSNFTIIITGFNM 400
Cdd:MTH00068 321 LTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGLGT 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 108742982 401 LITALYSLYMLTMTQRGKFTYHIHNIKPSYTRENTLMSMHMLPLIMLTFNPKIIMGL 457
Cdd:MTH00068 401 LITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILKPELISGM 457
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
1-458 9.43e-179

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 507.96  E-value: 9.43e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982   1 MLKIIMPTIMLFPVIWYSNSSMIWINMTSYSLMISLMTLPLL-NQTESNSNNFSLTFFSDSLSSPLLMLTVWLLPLMIMA 79
Cdd:MTH00127   1 MLKILIPTLMLIPTTWLTPAKWLWTTTLAHSLLIALASLTWLkNLSETGWSSLNLYMATDPLSTPLLVLTCWLLPLMILA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  80 SQHHLTKESLMRKKLYLSMLIFLQMFLIMTFTATELILFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLP 159
Cdd:MTH00127  81 SQNHTAPEPINRQRMYITLLTSLQIFLILAFGATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLP 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 160 LLVALIYVQKSLGSLNYLVMNMWSQDMSSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLG 239
Cdd:MTH00127 161 LLVALLLLQNSTGTLSMLTLQYSQPLQLSSWADKLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 240 GYGMLRLTMILNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAH 319
Cdd:MTH00127 241 GYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAH 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 320 GLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLASLTNLALPPFINLIGELFVIMASFSWSNFTIIITGFN 399
Cdd:MTH00127 321 GLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGLG 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 108742982 400 MLITALYSLYMLTMTQRGKFTYHIHNIKPSYTRENTLMSMHMLPLIMLTFNPKIIMGLT 458
Cdd:MTH00127 401 TLITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPLLLLILKPELIWGWT 459
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
3-454 3.97e-159

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 457.86  E-value: 3.97e-159
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982   3 KIIMPTIMLFPVIWYSNSSMIWINMTSYSLMISLMTL-PLLNQTESNSNNFSLTFFSDSLSSPLLMLTVWLLPLMIMASQ 81
Cdd:MTH00206   1 KILIPLIMLLLMTILSKKKWLWRSTTFFSFLIALLFLlWFKWSSEVGWSFSNLYLSYDPLSSPLVILSCWLLPLMFLASQ 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  82 HHLTKESLMRKKLYLSMLIFLQMFLIMTFTATELILFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLL 161
Cdd:MTH00206  81 NHMKNEPINRQRIYITLLIVLQLFLILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 162 VALIYVQKSLGSLNYLVMNMwsqDMSSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGY 241
Cdd:MTH00206 161 IALLFLQNSLGSLSLYILYF---SKLTTWNNNLWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGY 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 242 GMLRLTMILNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGL 321
Cdd:MTH00206 238 GMMRIILILGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGL 317
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 322 TSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLASLTNLALPPFINLIGELFVIMASFSWSNFTIIITGFNML 401
Cdd:MTH00206 318 VSSALFCLANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFL 397
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|...
gi 108742982 402 ITALYSLYMLTMTQRGKFTYHIHNIKPSYTRENTLMSMHMLPLIMLTFNPKII 454
Cdd:MTH00206 398 FTAIYSLYMFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPVILLILNPNLI 450
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
1-455 1.05e-154

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 446.73  E-value: 1.05e-154
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982   1 MLKIIMPTIMLFPVIWYSNSSMIWINMTSYSLMISLMTLPLL-NQTESNSNNFSLTFFSDSLSSPLLMLTVWLLPLMIMA 79
Cdd:MTH00044   1 MITLILLSLGIAITSWIVPKNKLWPISISQSSLISLLSLFLLnNHWSSSWHNLSLSLATDSLSSPLIILSCWLAPLSLLA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  80 SQHHLTKESLMRKKLYLSMLIFLQMFLIMTFTATELILFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLP 159
Cdd:MTH00044  81 SINHLSNNSPNNQRTFISLIIIILTALIITFSSLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLP 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 160 LLVALIYVQKSLGSLNYLVMNMWSQDMSSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLG 239
Cdd:MTH00044 161 LLISLIAIYSSSSSLSIPLSELNWLTSLSSNSSSIWWIFCILAFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 240 GYGMLRLTMILN-PTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIA 318
Cdd:MTH00044 241 GYGLIRLINLFSlPSANNISFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIA 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 319 HGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLASLTNLALPPFINLIGELFVIMASFSWSNFTIIITGF 398
Cdd:MTH00044 321 HGLVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIGL 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 108742982 399 NMLITALYSLYMLTMTQRGKFTYHIHNIKPSYTRENTLMSMHMLPLIMLTFNPKIIM 455
Cdd:MTH00044 401 ATVFGAIYSLLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPLILIIINPNIIL 457
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
1-457 1.69e-116

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 348.68  E-value: 1.69e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982   1 MLKIIMPTIMLFPVIWYSNSsmiWINMTSYSLMISLMTLPLLNQtESNSNNFSLTFFSDSLSSPLLMLTVWLLPLMIMAS 80
Cdd:MTH00163   1 MLKFLFMLLFLIPLCFLKNS---WWLVQSLLFLLSFLFMLLFSL-SFYFSNISYFFGLDLLSFGLILLSFWICMLMILSS 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  81 QhhLTKESLMRKKLYLSMLIFLQMFLIMTFTATELILFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPL 160
Cdd:MTH00163  77 E--SVYKKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPL 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 161 LVALIYVQKSLGSLNYLVMNMWSqdmsslWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGG 240
Cdd:MTH00163 155 LVGIFYLYNNSGSLSFFLLNFFG------SLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGG 228
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 241 YGMLRLTMILNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHG 320
Cdd:MTH00163 229 YGLLRVMSFFSKLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHG 308
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 321 LTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLASLTNLALPPFINLIGELFVIMASFSWSNFTIIITGFNM 400
Cdd:MTH00163 309 LCSSGLFCLANIIYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLS 388
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 108742982 401 LITALYSLYMLTMTQRGKFTYHIHNIKPSYTRENTLMSMHMLPLIMLTFNPKIIMGL 457
Cdd:MTH00163 389 FFSAAYSLYLYSYSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFMLW 445
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
37-457 1.35e-114

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 342.97  E-value: 1.35e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  37 MTLPLLNQTESNSNNFSLTFFSDSLSSPLLMLTVWLLPLMIMASQHhlTKESLMRKKLYLSMLIFLQMFLIMTFTATELI 116
Cdd:MTH00150   1 LSLLLLYSSFSSYESLSELFSVDSMSSLLISLSLWISGLMMLASQK--SVKLRNKSSSFSLLVLLLCLILVLAFSVSSLL 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 117 LFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQKSLGSLNYLVMNMWSQDMSSlwsSNLLW 196
Cdd:MTH00150  79 MFYFFFEASLIPTLLLILGWGYQPERLQAGMYMMLYTVGASLPLLLVILWMSSSYGSSFMLLISSLRKLLSS---MGLWG 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 197 LACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNPTTKIMAYPFIMLCLWGMIMTSSIC 276
Cdd:MTH00150 156 LLVFLAFLVKLPMYPFHLWLPKAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLIC 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 277 LRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMA 356
Cdd:MTH00150 236 LRQSDVKSLIAYSSVGHMSLVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLS 315
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 357 TWWLLASLTNLALPPFINLIGELFVIMASFSWSNFTIIITGFNMLITALYSLYMLTMTQRGKFTYHIHNIKPSYTRENTL 436
Cdd:MTH00150 316 LWWFLFCIINMAAPPSLNLLSEIMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLL 395
                        410       420
                 ....*....|....*....|.
gi 108742982 437 MSMHMLPLIMLTFNPKIIMGL 457
Cdd:MTH00150 396 LLLHWVPLLLLILKSDLLFMW 416
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
1-454 3.86e-104

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 317.45  E-value: 3.86e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982   1 MLKIIMPTIMLFPVIWYSNSSmIWINMTSYSLMISLMTLPLLNQTESNSNNFSLTFFSDSLSSPLLMLTVWLLPLMIMAS 80
Cdd:MTH00014   1 MLKLIMPLISLLLLPLIKYPW-SWALTFSTLLLLSLFTLLNLYPMSAPYSMFTESLSSDMLSAPLITLTLWITALMILAS 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  81 QHhlTKESLMRKKLYLSMLIFLQMFLIMTFTATELILFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPL 160
Cdd:MTH00014  80 FK--IFQNNKAPKTFMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASLPL 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 161 LVALIYVQKSLGSLNYLVMNMWSqdmSSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGG 240
Cdd:MTH00014 158 LMSILLIFYTNNSLSMLMSSMEP---PSIYLMNLWWLITILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKLGG 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 241 YGMLRLTMILNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHG 320
Cdd:MTH00014 235 YGLLRMSSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIAHG 314
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 321 LTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLASLTNLALPPFINLIGELFVIMASFSWSNFTIIITGFNM 400
Cdd:MTH00014 315 LCSSALFALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLAITS 394
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....
gi 108742982 401 LITALYSLYMLTMTQRGKFTYHIHNIKPSYTRENTLMSMHMLPLIMLTFNPKII 454
Cdd:MTH00014 395 FLAAAYSLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILKPDLI 448
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
5-455 7.46e-104

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 316.54  E-value: 7.46e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982   5 IMPTIMLFPVIWYSNSSMIWINMTSYSLMISLMTLPLLNQTESNSNNFSLTFFSDSLSSPLLMLTVWLLPLMIMASQHHL 84
Cdd:MTH00205   2 SIFGVFSLLIILFVLKFKDWSFFSNLLLIGLFFSSFFFSNSFLMTSFISSSFSFDSLSLPLIMLSFWISLLMVLASYKVF 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  85 TKESlmRKKLYLSMLIFLQMFLIMTFTATELILFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVAL 164
Cdd:MTH00205  82 KSNK--NSKLFTVSVIMLLLILILSFSVDNLLLFYITFEASLIPTLILILGWGYQPERLQASMYMMMYTLCASLPLLIGL 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 165 IYVQKSLGSLNylvMNMWSQDMSSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGML 244
Cdd:MTH00205 160 FFLNSLNFSLS---MFFNFPLNFSDFYLFLYWIFLMLAFLVKLPMYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLI 236
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 245 RLTMILNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSS 324
Cdd:MTH00205 237 RITSMLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSS 316
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 325 MLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLASLTNLALPPFINLIGELFVIMASFSWSNFTIIITGFNMLITA 404
Cdd:MTH00205 317 GMFALANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISFLSG 396
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|.
gi 108742982 405 LYSLYMLTMTQRGKFTYHIHNIKPSYTRENTLMSMHMLPLIMLTFNPKIIM 455
Cdd:MTH00205 397 AYSLYLYSQSQHGKVSSQISSFLAISEREYYILILHWFPLNILILKLKIFI 447
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
59-458 5.85e-85

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 268.87  E-value: 5.85e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  59 DSLSSPLLMLTVWLLPLMIMASQHHLTKeslmRKKLYLSMLIFLQMFLIMTFTATELILFYILFESTLIPTLIIITRWGN 138
Cdd:COG1008   81 DGISLPLVLLTALLTPLAILASWNEIKK----RPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLIGIWGG 156
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 139 QtERLNAGLYFLFYTLIGSLPLLVALIYVqkslgslnYLVMNMWSQDMSSL-------WSSNLLWLACIMAFMVKMPLYG 211
Cdd:COG1008  157 E-RRIYAAIKFFLYTLAGSLLMLVAILAL--------YFLAGALTFDIAELaaaplplTAQLLLFLAFFIAFAVKVPMFP 227
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 212 LHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNP-TTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSS 290
Cdd:COG1008  228 FHTWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFALPLFPeASAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSS 307
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 291 VSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLASLTNLALP 370
Cdd:COG1008  308 VSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLP 387
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 371 PFINLIGELFVIMASFSWSNFTIIITGFNMLITALYSLYMLTMTQRGKFTYHIHNIKPSYTRENTLMSMHMLPLIMLTFN 450
Cdd:COG1008  388 GTSGFVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMYQRVFFGPLKEELAELPDLNPRELAVLAPLAALILLLGLY 467

                 ....*...
gi 108742982 451 PKIIMGLT 458
Cdd:COG1008  468 PQPLLDLI 475
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
59-459 1.48e-75

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 244.46  E-value: 1.48e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982   59 DSLSSPLLMLTVWLLPLMIMASQHHLTKeslmRKKLYLSMLIFLQMFLIMTFTATELILFYILFESTLIPTLIIITRWGN 138
Cdd:TIGR01972  76 DGISLLLVLLTALLTLLAILASWESIQK----RVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGG 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  139 QTeRLNAGLYFLFYTLIGSLPLLVALIY-VQKSLGSLNYLVMNmwSQDMSSLWSSnLLWLACIMAFMVKMPLYGLHLWLP 217
Cdd:TIGR01972 152 PN-RIYAAMKFFLYTLAGSLLMLLAILGlYFLGGGTFDLLELL--NLPLPFGVQT-WLFLAFFIAFAVKVPLFPLHTWLP 227
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  218 KAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNP-TTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 296
Cdd:TIGR01972 228 DAHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGF 307
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  297 VIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLASLTNLALPPFINLI 376
Cdd:TIGR01972 308 VLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFV 387
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  377 GELFVIMASFSWSNFTIIITGFNMLITALYSLYMLTMTQRGKFTYHIHNIKPS-YTRENTLMSMHMLPLIMLTFNPKIIM 455
Cdd:TIGR01972 388 GEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLYKRVFFGELSNPEVAEFPDlNGREIAVLAPLVVLILFLGLYPNPLL 467

                  ....
gi 108742982  456 GLTY 459
Cdd:TIGR01972 468 DLTE 471
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
59-454 2.66e-75

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 244.34  E-value: 2.66e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  59 DSLSSPLLMLTVWLLPLMIMASQHHLTKeslmRKKLYLSMLIFLQMFLIMTFTATELILFYILFESTLIPTLIIITRWGn 138
Cdd:PRK05846  81 DGISLLLVVLTALLTPLAVLASWEEIKK----RVKFYMAALLWLEGGVIGVFAALDLLLFYVFFEAMLIPMYFLIGVWG- 155
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 139 QTERLNAGLYFLFYTLIGSLPLLVALIYV----QKSLGSLNYLVmnmWSQDMSSLWSSNLLWLACIMAFMVKMPLYGLHL 214
Cdd:PRK05846 156 GKNRIYAATKFFLYTLLGSLLMLVAIIYLvvvyYNATGTFDIAD---LLNLPLPPGVQYWLFLAFFIAFAVKMPMFPLHT 232
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 215 WLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNP-TTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSH 293
Cdd:PRK05846 233 WLPDAHVQAPTAGSVLLAGILLKMGAYGLLRFSLPLFPdASHEFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISH 312
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 294 MALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLASLTNLALPPFI 373
Cdd:PRK05846 313 MGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTS 392
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 374 NLIGELFVIMASFSWSNFTIIITGFNMLITALYSLYMLTMTQRGKFTYHIHNIKPSYTRENTLMSMHMLPLIMLTFNPKI 453
Cdd:PRK05846 393 GFVGEFLILLGSFQVNPVIAFIATTGLILAAVYSLWLYQRVMFGPVKNEVAKLKDLNGRELLILLPLVALLLLLGVYPKP 472

                 .
gi 108742982 454 I 454
Cdd:PRK05846 473 L 473
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
53-410 1.65e-67

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 223.40  E-value: 1.65e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  53 SLTFFSDSLSSPLLMLTVWLLPLMIMASQH---HLTKESLMrkklylsMLIFLQMFLIMTFTATELILFYILFESTLIPT 129
Cdd:MTH00204  76 PLVFAVDGVSLFFILLTTLLIPICILISWKsikFLFKEFLL-------CLLFLEVLLIGVFSVLDLLLFYILFEGILIPM 148
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 130 LIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQKSLGSLNY-LVMNMWSQDMSSLWssnlLWLACIMAFMVKMP 208
Cdd:MTH00204 149 FLLIGIWGSREEKVRASYYFFFYTFAGSVFMLLGIFQLYSITGTTDYqILLNIKLPLSIQKW----LLVGFFLSLAVKIP 224
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 209 LYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNPTTKIMAYPFI-MLCLWGMIMTSSICLRQTDLKSLIA 287
Cdd:MTH00204 225 QIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGFLRFSWPLFPAASEYFAPLIvMLSVIAVIYGSLTTCRQVDFKRLIA 304
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 288 YSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLASLTNL 367
Cdd:MTH00204 305 YSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIMLVLSLANM 384
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|...
gi 108742982 368 ALPPFINLIGELFVIMASFSWSNFTIIITGFNMLITALYSLYM 410
Cdd:MTH00204 385 GFPLSCNFVGEFFSLLAAFEYSLGLGVLVTSGMVWSAAYSLYL 427
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
53-410 2.73e-67

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 223.01  E-value: 2.73e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  53 SLTFFSDSLSSPLLMLTVWLLPLMIMASQH---HLTKESLMRkklylsmLIFLQMFLIMTFTATELILFYILFESTLIPT 129
Cdd:MTH00217  73 PVVFAVDGISIFFLILTALLTPICILISWNsikFLIKEFLLC-------LLVIEILLMGVFTILDLVGFYILFEGILIPM 145
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 130 LIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQKSLGSLNYlvMNMWSQDMSSLWSsNLLWLACIMAFMVKMPL 209
Cdd:MTH00217 146 FLIIGIWGSREEKVQASYYFFFYTFIGSVFMLLGIFTLYSYAGTTDY--QALCCLKIEKELQ-YFIFLGFFLSLAIKIPK 222
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 210 YGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAY 288
Cdd:MTH00217 223 IPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFSWPLLPEASEYFSPLIQtLSLLAIIYGSLTTCRQVDLKRIIAY 302
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 289 SSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLASLTNLA 368
Cdd:MTH00217 303 SSVAHMGLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILMLLLVLANAS 382
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 108742982 369 LPPFINLIGELFVIMASFSWSNFTIIITGFNMLITALYSLYM 410
Cdd:MTH00217 383 IPLSCNFVGEFLSLLAAFEYSYIVGVLASLGMVLSAGYSIYL 424
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
112-398 2.04e-63

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 206.78  E-value: 2.04e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  112 ATELILFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQKSLGSLNYLVMNMWSQDMSSLWS 191
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNSSG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  192 SNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNPTTKIMAYPFIMLCLWGMIM 271
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  272 TSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANS-NYERIHSRTMLLARGLQA 350
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSvIYRRVHTRNIRDYGGLAK 240
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 108742982  351 FLPLMATWWLLASLTNLALPPFINLIGELFVIMASFSWSNFTIIITGF 398
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGV 288
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
54-409 1.07e-60

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 205.93  E-value: 1.07e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  54 LTFFSDSLSSPLLMLTVWLLPLMIMASQHHLtkeSLMRKKLYLSMLIfLQMFLIMTFTATELILFYILFESTLIPTLIII 133
Cdd:MTH00226  96 LVFAVDGISIYFIILTGFIVPCSILISWHSV---KYLTKSFLICMLI-LEFLLYAVFSVLDIFMFYILFEGVLIPMYLIL 171
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 134 TRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQKSLGSLNYLVMnMWSQDMSSLWSSNLLWLACIMAFMVKMPLYGLH 213
Cdd:MTH00226 172 GIWGSREEKMQAAYYFFFYTLIGSVLMLLCLFSLYNIHGTTDYLTL-ASCSHVVSEQTQKWIFLGIFLAMAVKIPIFPFH 250
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 214 LWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTM-ILNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVS 292
Cdd:MTH00226 251 IWLPKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWpILPLGAQNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVA 330
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 293 HMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLASLTNLALPPF 372
Cdd:MTH00226 331 HMGLVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPS 410
                        330       340       350
                 ....*....|....*....|....*....|....*..
gi 108742982 373 INLIGELFVIMASFSWSNFTIIITGFNMLITALYSLY 409
Cdd:MTH00226 411 GNFIGEYLSILSSFNWNPIIGVFVCSGVILSAVYSFY 447
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
59-457 3.00e-45

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 164.43  E-value: 3.00e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  59 DSLSSPLLMLTVWLLPLMIMASQHHLTKeslmrKKLYLSMLIFLQMFLIMTFTATELILFYILFESTLIPTLIIITRWGN 138
Cdd:PRK12561  58 DGLSMPLVLLSGLITTLSIFASWKVTRK-----PRLFYFLMLVLYSAQIGVFLAQDLLLFFLMWELELVPVYLLISIWGG 132
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 139 QtERLNAGLYFLFYTLIGSLPLLVALIYVQKSLGSLNYLVMNMWSQDMSsLWSSNLLWLACIMAFMVKMPLYGLHLWLPK 218
Cdd:PRK12561 133 Q-KRLYAATKFILYTALASIFILVAGLALALSGDTFTFDLAELGAKSYP-LALELLLYAGFLIAFGVKLPIFPLHTWLPD 210
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 219 AHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNPTTKIMAYP-FIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297
Cdd:PRK12561 211 AHGEASAPVSMILAGVLLKMGGYALIRFNVQMLPDAHVYFAPaLAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFV 290
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 298 IVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLASLTNLALPPFINLIG 377
Cdd:PRK12561 291 LLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMPKTFALFTASSMASLALPGMSGFVS 370
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 378 ELFVIMASFSWSNF-------TIIITGFNMLITALYSLYMLTMTQRGKFTYHIH------NIKPsytRENTLMSMHMLPL 444
Cdd:PRK12561 371 ELTVFLGITSSDVYsstfrtiTILLAAVGLILTPIYLLSMLRRVFYGPRSELLPalavveDAKP---RELFIALSLLVPI 447
                        410
                 ....*....|...
gi 108742982 445 IMLTFNPKIIMGL 457
Cdd:PRK12561 448 IGIGFYPKLATQL 460
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
84-447 7.36e-44

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 158.53  E-value: 7.36e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  84 LTKESLMRKKLYLSMLIFLQMFLIMTFTateLILFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVA 163
Cdd:MTH00094  56 LLSEKNFNLLILSNLLILICLLFFVSSN---MLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLFV 132
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 164 LIYVQKSLgSLNYLVMNMwsqdmsslwsSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGM 243
Cdd:MTH00094 133 YLKNFFFF-SLCYFDFFL----------SWEMFFILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGF 201
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 244 LRltmILNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTS 323
Cdd:MTH00094 202 LR---ILGSLNFVYNNFWIIFSLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTS 278
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 324 SMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLASLTNLALPPFINLIGELFVIMASFSWSNFTIIITGFNMLIT 403
Cdd:MTH00094 279 TLMFYLIGEFYHISKSRLIYFMNSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVS 358
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 108742982 404 ALYSLYMLTMTQRGKFTYHIHNIKPSYTRENTLMSMHMLPLIML 447
Cdd:MTH00094 359 FYYSLFLIVSSFMGKKFSNFNNFNVGLSLPLVFMMFNMFWLSLF 402
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
59-430 1.96e-43

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 159.48  E-value: 1.96e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  59 DSLSSPLLMLTVWLLPLMIMASQhhltkESLMRKKLYLSMLIFLQMFLIMTFTATELILFYILFESTLIPTLIIITRWGN 138
Cdd:PRK06473  78 DGLSLPLLVLNSLLTLIAIYSSD-----ESIQRPRFYYSLLLLLNAGVSGAFLAQDLLLFFLFYELELIPLYLLIAIWGG 152
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 139 QtERLNAGLYFLFYTLIGSLPLLVALIYVQKSLGSLNYLVMNMWSQDMSsLWSSNLLWLACIMAFMVKMPLYGLHLWLPK 218
Cdd:PRK06473 153 Q-RRGYAATKFLLYTAISGILILVSFLGLVWLSGASSFDYEPLRSHTLP-LSTQLLLLAPILVGFGIKIPLVPFHTWLPD 230
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 219 AHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNPTTKIMAYPFimLCLWGMIMT---SSICLRQTDLKSLIAYSSVSHMA 295
Cdd:PRK06473 231 AHVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPW--LATWAVVSVlygASCAIAQKDMKKMVAYSSIGHMG 308
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 296 LVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGL---QAFLPLMATWWLLASLTNLALPPF 372
Cdd:PRK06473 309 YILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLlnpERGLPITGSLMILGVMASAGIPGM 388
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 108742982 373 INLIGELFVIMASFswsNFTIIITGFNMLITALYSLYMLTMTQR---GKFTYHIHNIKPSY 430
Cdd:PRK06473 389 VGFIAEFLVFRGSF---PIFPVQTLLCMIGTGLTAVYFLLLVNRvffGRLTAELSNLPRVL 446
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
52-409 3.56e-43

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 157.23  E-value: 3.56e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  52 FSLTFFSDSLSSPLLMLTVWLLPLMIMASQHHLTKESlmRKKLYLSMLIFLQMFLIMTFTATELILFYILFESTLIPTLI 131
Cdd:COG0651   68 FGIVLVADRLSALFLLLTALVALAVLLYSIGYMRHER--RGRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYG 145
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 132 IITRWGNQtERLNAGLYFLFYTLIGSLPLLVALIYVQKSLGSLNYLVMNMWSQDMSSLWSSnLLWLACIMAFMVKMPLYG 211
Cdd:COG0651  146 LVALGGTK-EALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLAELDPGLLL-AAFALLLVGFGIKAALFP 223
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 212 LHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNPTTKIMAYPFIMLCLWG--MIMTSSICLRQTDLKSLIAYS 289
Cdd:COG0651  224 LHFWLPDAYPAAPSPVSALLSGLLTKVGVYAILRVLTLLFGADPALFLGTLLLVLGLltMLVGALGALAQRDLKRLLAYS 303
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 290 SVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLASLTNLAL 369
Cdd:COG0651  304 SVSQIGYILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGL 383
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 108742982 370 PPFINLIGELFVIMASFSWSNFTIIITgfnMLITALYSLY 409
Cdd:COG0651  384 PPLSGFVSKWLLLQAALEAGAWLLAAV---LLLSSLLTLA 420
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
58-454 4.29e-36

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 139.46  E-value: 4.29e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  58 SDSLSSPLLMLTVWLLPLMIMASQhhltkESLMRKKLYLSMLIFLQMFLIMTFTATELILFYILFESTLIPTLIIITRWG 137
Cdd:PRK02546  85 ADGLSMPLILLTGFITTLAVLAAW-----PVTFKPKLFYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWG 159
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 138 NQtERLNAGLYFLFYTLIGSLPLLVALIYVQKSLGSLNYLVMNMWSQDMSsLWSSNLLWLACIMAFMVKMPLYGLHLWLP 217
Cdd:PRK02546 160 GK-KRQYAATKFILYTAGSSLFILLAALAMAFYGDTPTFDMTALAAKDFG-LGFQLLCYAGLLIAYGVKLPIVPLHTWLP 237
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 218 KAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNPTTKIMAYP-FIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 296
Cdd:PRK02546 238 DAHGEATAPVHMLLAGILLKMGGYALLRMNAGMLPDAHAQFAPlLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGF 317
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 297 VIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLASLTNLALPPFINLI 376
Cdd:PRK02546 318 VLIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAMWTACSLASLALPGMSGFV 397
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 377 GELFViMASFSWSN-----FTIIITGFNMLITALYSLYMLTM-------TQRGKFTYHiHNIKPSYTRENTLMSMHMLPL 444
Cdd:PRK02546 398 AELMV-FVGFATSDaytlpFRVVVVFLAAVGVILTPIYLLSMlreiffgPENKELVSH-EKLVDAEPREVFIIACLLVPI 475
                        410
                 ....*....|
gi 108742982 445 IMLTFNPKII 454
Cdd:PRK02546 476 IGIGLYPKLV 485
ndhD CHL00011
NADH dehydrogenase subunit 4
59-457 1.24e-35

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 137.77  E-value: 1.24e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  59 DSLSSPLLMLTVWLLPLMIMASQHhLTKESlmrKKLYLSMLIflqMF--LIMTFTATELILFYILFESTLIPTLIIITRW 136
Cdd:CHL00011  83 DGLSIGPILLTGFITTLATLAAWP-VTRNS---RLFYFLMLA---MYsgQIGLFSSRDLLLFFIMWELELIPVYLLLSMW 155
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 137 GNQtERLNAGLYFLFYTLIGSLPLLVALIYVqkSLGSLNYLVMNMWSQDMSS--LWSSNLLWLACIMAFMVKMPLYGLHL 214
Cdd:CHL00011 156 GGK-KRLYSATKFILYTAGGSIFLLIGVLGM--GLYGSNEPTLNFETLANQSypVALEILFYIGFLIAYAVKLPIIPLHT 232
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 215 WLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNPTTKIMAYPFIMLC-LWGMIMTSSICLRQTDLKSLIAYSSVSH 293
Cdd:CHL00011 233 WLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLVIVgAIQIIYAASTSLGQRNLKKRIAYSSVSH 312
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 294 MALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIhsRTMLLAR--GLQAFLPLMATWWLLASLTNLALPP 371
Cdd:CHL00011 313 MGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRI--RLVYLDEmgGIAIPMPKIFTMFSSFSMASLALPG 390
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 372 FINLIGELFV---IMASFSWS-NFTIIITGFNMLITALYSLYMLTMTQRGKFTYHIHNIKPSY-----TRENTLMSMHML 442
Cdd:CHL00011 391 MSGFVAELIVffgIITSQKYLlMPKILITFVMAIGMILTPIYLLSMLRQMFYGYKLFNVPNSYffdsgPRELFISICILL 470
                        410
                 ....*....|....*
gi 108742982 443 PLIMLTFNPKIIMGL 457
Cdd:CHL00011 471 PVIGIGIYPDFVLSL 485
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
59-418 2.28e-34

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 134.45  E-value: 2.28e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  59 DSLSSPLLMLTVWLLPLMIMASQhhltkESLMRKKLYLSMLIFLQMFLIMTFTATELILFYILFESTLIPTLIIITRWGN 138
Cdd:PRK07363  78 DGLSLPLLVLNSLLTWIAIYSIG-----ENTERPRLYYSLILLINGGIAGALLAQNLLLFFLFYELELIPFYLLIAIWGG 152
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 139 QtERLNAGLYFLFYTLIGSLPLLVALIYVQKSLGSLNYLVMNMWSQDMSsLWSSNLLWLACIMAFMVKMPLYGLHLWLPK 218
Cdd:PRK07363 153 E-KRGYASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSFDYDAISTQNLS-LNTQLILLTGLLLGFGIKIPLVPLHTWLPD 230
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 219 AHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNPTTKIMAYPfiMLCLWGMIMT---SSICLRQTDLKSLIAYSSVSHMA 295
Cdd:PRK07363 231 AYTEASPAVAILLGGVLAKLGTYGLLRFGLQLFPQTWSLVAP--GLAIIGTISViygALSAIAQKDIKRMVAYSSIGHMG 308
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 296 LVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQA---FLPLMATWWLLASLTNLALPPF 372
Cdd:PRK07363 309 YILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGLMNpirGLPLTSALLVLAGMASAGIPGL 388
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*.
gi 108742982 373 INLIGELFVIMASFSWSNFTIIITGFNMLITALYSLYMLTMTQRGK 418
Cdd:PRK07363 389 VGFVAEFIVFQGSFSTFPIPTLLCIVASGLTAVYFVILLNRTCFGR 434
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
53-387 1.06e-23

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 103.42  E-value: 1.06e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  53 SLTFFSDSLSSPLLMLT--VWLLPLMIMASQHHltkeslMRKKLYLSMLIFLQMFLIMTFTATELILFYILFESTLIPTL 130
Cdd:PRK08375  70 GIELRADSLSALFLLVTsiLAIAALLYAIGYGE------HRQTRFYALFLLLLAGLLGALLTADLFNLFVFLEIMSLSSY 143
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 131 IIITRWGNQtERLNAGLYFLFYTLIGSLPLLVALIYVQKSLGSLNylvMNMWSQDMSSLWSSNLLWLACIMAFMVKMPLY 210
Cdd:PRK08375 144 ALVAMGGDR-RALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLN---MADLAGALAENPTVVTAFGFVLLALALKAAVF 219
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTM----ILNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLI 286
Cdd:PRK08375 220 PLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYFtvfgGDFRFALGLGWLLAVLALLSMLVGSLAALGQDDVKRVL 299
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 287 AYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLASLTN 366
Cdd:PRK08375 300 AYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLGRRMPLTAAAFAVASLSL 379
                        330       340
                 ....*....|....*....|.
gi 108742982 367 LALPPFINLIGELFVIMASFS 387
Cdd:PRK08375 380 IGVPPTSGFVSKWYLVVGAVE 400
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
31-408 2.95e-23

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 102.36  E-value: 2.95e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  31 SLMISLMTLPLLNQTESNSN-----------NFSLTFFSDSLSSPLLMLTVWLLPLMIMASQHHLTKESLmrKKLYLSML 99
Cdd:PRK12667  42 SLITLILSILLFIQVYSSNKpivylfggwpaPIGIVYEVDLLGALLGLLTALVMFLILIYSYWYLEHESG--PEWYYTLL 119
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 100 IFLQMFLIMTFTATELILFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQKSLGSLN---- 175
Cdd:PRK12667 120 LGLEAGMLGILLTGDAFNLFVMLEVLSISAYGLVAYYRDRGDAVEAAIKYALIGAVGTTLYFLALAFLYATFGTLNmadl 199
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 176 -YLVMNMWSQDMSSL-----WSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRL--- 246
Cdd:PRK12667 200 sAKIRGLSFPLTGGLagnppLALGVALALALWAFTIKAAIFPNHFWLPDAHPAAPSPVSAMLSGLVVNVGAYAIIRFlyt 279
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 247 ----TMILNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLT 322
Cdd:PRK12667 280 ifgiSPSLIDFRAALSPILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIA 359
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 323 SSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLASLTNLALPPFINLIGELFVIMASFSWSnftIIITGFNMLI 402
Cdd:PRK12667 360 KSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESG---FYLPALVLLI 436

                 ....*.
gi 108742982 403 TALYSL 408
Cdd:PRK12667 437 ASAISL 442
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
206-447 2.20e-20

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 93.46  E-value: 2.20e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 206 KMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNPTTKIMAYPFIMLC--LWGMIMTSSICLRQTDLK 283
Cdd:PRK06458 227 KVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRYYILIDAAIGSDFPGRLLLIfgLLSVLVAAFFLLRQRDIK 306
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 284 SLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLAS 363
Cdd:PRK06458 307 RLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPLTGWGLMLGA 386
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 364 LTNLALPPFINLIGELFVIMASFS---WSNFTIIITGfnmLITALYSLYMltMTQRGKFTYHIHNIKPSYTRENTLMSMH 440
Cdd:PRK06458 387 LAIAGMPPFGVFISEFLILTAGLArgpLLIAILLLLL---LTLAFAALVR--RVAGMVFGEPPEAVNRGDLGWLTTSPMF 461

                 ....*..
gi 108742982 441 MLPLIML 447
Cdd:PRK06458 462 VHLVLVL 468
Oxidored_q5_N pfam01059
NADH-ubiquinone oxidoreductase chain 4, amino terminus;
1-109 9.69e-20

NADH-ubiquinone oxidoreductase chain 4, amino terminus;


Pssm-ID: 366442 [Multi-domain]  Cd Length: 110  Bit Score: 84.11  E-value: 9.69e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982    1 MLKIIMPTIMLFPVIWYSNSSMIWINMTSYSLMISLMTLPLLNQ-TESNSNNFSLTFFSDSLSSPLLMLTVWLLPLMIMA 79
Cdd:pfam01059   1 MLKILLPTLMLIPLTFLSKPKWLWTTSTLYSLLLALLSLLLLNNpSNFSWSNLSYFLGIDSLSYPLIILSCWLLPLMILA 80
                          90       100       110
                  ....*....|....*....|....*....|
gi 108742982   80 SQHHLTKESLMRKKLYLSMLIFLQMFLIMT 109
Cdd:pfam01059  81 SQKHLKSEPNNRQRTFIFLLILLQLFLILT 110
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
97-395 1.19e-18

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 87.67  E-value: 1.19e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  97 SMLIFLQM-FLIMTFTATELILFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQKSLGSLN 175
Cdd:MTH00062  74 RFFLFLSLiFSILCFCVNNSLLFWFFYELSIIPLLYLLFSESPYSERYLASWYFLGYLLLTSLPLLLCLLYLSLVNGSFN 153
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 176 YlvmNMWSQDMSSLWSSNLLwlaCIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNPTTk 255
Cdd:MTH00062 154 F---SDWGSDDSVSLIVYYV---LSFMFITKVPLFPFHTWLPIVHAEASSPVSIFLSGYIMKLGLLGVYRFCGFIFSGS- 226
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 256 IMAYPFIMLCLWGMIMTSSicLRQTDLKSLIAYSSVSHMaLVIVAILMQTPWSFMGATALM-IAHGLTSSMLFCLANSNY 334
Cdd:MTH00062 227 FLGYLFLCCLFSVFFLITA--CSELDGKRWLAFLSLSHI-LVPVLGLFVGDWSSINLSFFYcLGHGLSAGLVFLLLWCFY 303
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 108742982 335 ERIHSRTMLLARGLQAFLPLMATWWLLASLTNLALPPFINLIGELFVIMASFSWSNFTIII 395
Cdd:MTH00062 304 EVSGSRNWVLLKSGINGSLVLRVIVVFSFLSLCSFPPTIQFFCEVFLVSSSFGVLVYLLFW 364
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
80-404 2.29e-16

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 81.34  E-value: 2.29e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  80 SQHHLTKESLmrkKLYLSMLIFLQMFLIMTFTATELILFYILFE-STLIPTLIIITRwgNQTERLNAGLYFLFYTLIGSL 158
Cdd:PRK08676  92 SNGELDPENL---KVFYLGFNLLLSVITFAFFSDNLALFWIFAElTTVFSAMLIAIL--SARENIDAALKYIFIASTAMI 166
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 159 PLLVALIYV------QKSLGSLNYLVMnmwsQDMSSLWSSNLLWLACIM---AFMVKMPLYGLHLWLPKAHVEAPIAGSM 229
Cdd:PRK08676 167 FAFIGLIFLfsltrqALGTGTLNWTEL----AAHASLLSPSVLGASFLFifiGFLAKSGLVPFHTWLPAAYAKAPSVVSA 242
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 230 VLAAVLLKLGGYGMLRLTMILNpTTKIMAYPFIMLCLWGMIMTSSIC---LRQTDLKSLIAYSSVSHMALVIVAILMQTP 306
Cdd:PRK08676 243 LLSGTVLNIGIYGILRLSALLR-QSGAAEQFSNVLIGLGIFSIAVAAfsmLSQRNLKKLIAFSSIEHMGLMLLGIGIGTP 321
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 307 WSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLASLTNLALPPFINLIGELFVIMASF 386
Cdd:PRK08676 322 LALFWMLFHMLAHSLVKSGLFFSAGILHRQYRSDRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILLQLG 401
                        330
                 ....*....|....*...
gi 108742982 387 SWSNFTIIITGFNMLITA 404
Cdd:PRK08676 402 GISVWLVLAVLLLLLLAA 419
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
47-327 4.35e-16

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 80.81  E-value: 4.35e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  47 SNSNNFSLTFFSDSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLIFLqmflIMTFTATELILFYILFESTL 126
Cdd:PRK08668  56 LFFGGFKLTFTLTHLSWFFAMISLLVIFSVAFFMVSEKTKNDAYFNMFALMSLAGV----LGVFLANDLLTLYIFWEIMT 131
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 127 IPTLIIITRwGNQTERLNAGLYFLFyTLIGSLPLLVALIYVQKSLGSLNYL-VMNMWSQDMSSLWSsnLLWLACIMAFMV 205
Cdd:PRK08668 132 FSSFMMVPM-GKKESRKASLKYFVL-SAIGAYAMLYAIFLIYAKTGTFDFAdISQGLINDTSTGFA--LIVFLFLLAFGV 207
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 206 -KMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLrLTMILNPTTKIMA------------YPFIMLCLWGMIMT 272
Cdd:PRK08668 208 aKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSKLGAYGFL-LVLYVLPGTKLFSefgtyrgvplfnYILAWLGNISIIVG 286
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 108742982 273 SSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLF 327
Cdd:PRK08668 287 TLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFF 341
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
52-412 1.61e-15

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 79.00  E-value: 1.61e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  52 FSLTFFSDSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLIFLQMF-LIMTFTATELILFYILFESTLIPTL 130
Cdd:PRK08667  69 LDITFHIDRLAAFFIILIGLVSLCVAIYSLGYNEHMSSNERANLLSALTALFILsMLGVVASANTFSFLFFWEIMALSSF 148
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 131 IIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQKSLGSLNYLVMNMWSQDMSslwssnLLWLACIMAFMVKMPLY 210
Cdd:PRK08667 149 FLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAGILS------LVFLLLFLGFGIKAGII 222
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLR-LTMILNPTtkiMAYPFIMLCLwGMI---MTSSICLRQTDLKSLI 286
Cdd:PRK08667 223 PFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRfLMDVLSPE---LWWGVLILLA-GSIsalLGVIYALKEHDLKGLL 298
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 287 AYSSVSHMALVIVAILMQTPWSFMGATALM-----------IAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLM 355
Cdd:PRK08667 299 AYSSIENIGIILMGIGLYVIFGVYGLDTLAllalggalfhsLNHALFKSLLFLTAGSVVHATGTRNIEKMGGLVKLMPYT 378
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 108742982 356 ATWWLLASLTNLALPPFINLIGELFVIMASFswSNFTIIITGFNMLITALYSLYMLT 412
Cdd:PRK08667 379 SALFLVGAVSIAALPPFNGFASELLLYESFF--QSFSVADPLIKILLFSVLAIFALT 433
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
100-409 2.44e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 78.09  E-value: 2.44e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 100 IFLQMFLI------MTFTATELILFYILFESTLIPTLIIITRwGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQKSLGS 173
Cdd:PRK12665 112 IFLPTYLIlvagvsNAFLAGDLFNLYVGFEILLVASYVLLTL-GATAARVRAGVTYVMVSMVSSLLFLIGIALVYAATGT 190
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 174 LNYLVMNMWSQDMSSlWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNPT 253
Cdd:PRK12665 191 LNMADLAVRLDELPS-GTRTALFAVLLVAFGIKAAVFPLSFWLPDSYPTAPAPVTAVFAGLLTKVGVYAIIRTHTLLFPG 269
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 254 TKIMAypFIMLC-LWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFcLANS 332
Cdd:PRK12665 270 GGLDT--LLMVVaLLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLF-LVVG 346
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 333 NYERiHSRTMLLAR--GLQAFLPLMATWWLLASLtNLA-LPPFINLIGELFVIMA---SFSWSNFTIIITGfnmLITALY 406
Cdd:PRK12665 347 LIER-QAGSSSLRRlgGLAKASPLLAVLFFVPAL-NLGgIPPFSGFIGKVALLEAgaeDGTWLAWALVAGG---VVTSLL 421

                 ...
gi 108742982 407 SLY 409
Cdd:PRK12665 422 TLY 424
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
95-431 1.65e-14

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 75.57  E-value: 1.65e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  95 YLSMLIFLQMFLIMtftATELILFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQKSLGSL 174
Cdd:COG1009  116 YLLLFMAAMLGLVL---SDNLLLLFVFWELVGLCSYLLIGFWYEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTL 192
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 175 NYLVMNMWSQdmsSLWSSNLLWLACIMAF---MVKMPLYGLHLWLPKAhVEAPIAGSMVL-AAVLLKLGGYGMLRLTMIL 250
Cdd:COG1009  193 NFSELLAAAP---TILSSPLLTLILLLLLlgaFGKSAQFPLHFWLPDA-MEGPTPVSALLhAATMVKAGVYLLARLSPLF 268
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 251 NPTTkiMAYPFIMLC-LWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQtpwSFMGATALMIAHGLTSSMLFCL 329
Cdd:COG1009  269 ALSP--VWLTVVAIIgAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVG---AYVAALFHLLTHAFFKALLFLG 343
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 330 ANSNYERIHSRTMLLARGLQAFLPLMATWWLLASLTNLALPPFINLIGELFVIMASFSWSNFTIIITGFNML---ITALY 406
Cdd:COG1009  344 AGSVIHATGTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAALEAGGLGPLLLAVALLgafLTAFY 423
                        330       340
                 ....*....|....*....|....*....
gi 108742982 407 SLYMLTMT----QRGKFTYHIHNIKPSYT 431
Cdd:COG1009  424 SFRLFFLVffgkPRPKTPKHPHESPWLMT 452
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
101-339 9.14e-14

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 73.06  E-value: 9.14e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 101 FLQMFLIM-------TFTATELILFYILFESTLIPTLIIITrWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQKSLGS 173
Cdd:PRK07234  95 FFYAQLLIlhgsvnaAFVCADLISLYVALEVLSIATFLLVA-YPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGT 173
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 174 LnylvmnmwsqDMSSLWSSNLLWLACI-MAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILNP 252
Cdd:PRK07234 174 F----------AFSGLATADPEAFALIaLGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPG 243
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 253 TTKIMAYPFIMLCLWGmimtSSICLRQTDLKSLIAYSSVSHMALVIVAILMqtpwsfmgATALMIAHGLTSSMLFCLANS 332
Cdd:PRK07234 244 LDLIVRIFGVGTALLG----VLFALLEKDLKRMLAFSTISQLGFILAAPLV--------GGLYALAHGLVKSTLFLCAGA 311

                 ....*..
gi 108742982 333 NYERIHS 339
Cdd:PRK07234 312 LPSRNFT 318
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
104-395 2.82e-13

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 71.72  E-value: 2.82e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 104 MFLIMTFTATELIL------FYILFESTLIpTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQKSLGSLNYL 177
Cdd:PRK08377 113 LFLLLMLGATGMIAtgdifnLFVFMEITAI-TAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGTLNMA 191
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 178 VMNMWSQDMSSLWSSNLLWLaCIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMIL---NPTT 254
Cdd:PRK08377 192 HIAQLAGTIDPTVAQVGLAL-LIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLMqnaNGWS 270
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 255 KIMAYPFIMLCLwGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNY 334
Cdd:PRK08377 271 SVLKLVIIMATL-TVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLFLAVGYVG 349
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 108742982 335 ERIHSRTMLLARGLQAFLPLMATWWLLASLTNLALPPFINLIGELFVIMASFSWSNFTIII 395
Cdd:PRK08377 350 ITLGGTEIEKFEGLGKRMPLTALALTIGALSTVGIPLFNVFWSKFRIILAGLSAGYTWPVA 410
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
91-401 9.08e-13

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 70.00  E-value: 9.08e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  91 RKKLYLSMLIFLQMFLIMTFTATELILFyILFESTLIPTLIIITRWGNQtERLNAGLYFLFYTLIGSLPLLVALIYVQKS 170
Cdd:PRK06525 112 TGRYYAFLLLFIGAMAGLVYSSTLLGLL-LFFEITGLCSWALISYYQSP-KALRSALKALLITHIGSLGLYLAAATLFLQ 189
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 171 LGSLNYLVMNMWSQDMSSLwssnlLWLACIMAFMVKMPLYGLHLWLPKAhVEAPIAGSMVL-AAVLLKLGGYGMLRLTMI 249
Cdd:PRK06525 190 TGTFALSALSGLHGSLKYL-----VFLGILFAAWGKSAQLPFYSWLPDA-MEAPTPASAYLhAASMVKVGVYIFARAIQS 263
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 250 LNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAI---LMQTPWSFMGATALMIAHGLTSSML 326
Cdd:PRK06525 264 MGPIPHVIGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLslaILGSRLALEGSIAYIFNHAFAKSLF 343
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 108742982 327 FCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLASLTNLALPPFINLIGELFVIMASFSWSNFTIIITGFNML 401
Cdd:PRK06525 344 FLVAGALSYSCGTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIFAAGFELSVEYWILLPAMVL 418
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
52-408 1.22e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 69.59  E-value: 1.22e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  52 FSLTFFSDSLSSPLLMLTVWLLPLMIMASQHHLTKESlmRKKLYLSMLIFLQMFLIMTFTATELILFYILFESTLIPTLI 131
Cdd:PRK07691  69 FGIVFVADMFAALLVLTSSIITFLVILYSFQTIGIER--ERYYYYPSVLFMLAGVNGAFLTGDIFNLFVFFEVMLMASYV 146
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 132 IITRWGNQTErLNAGLYFLFYTLIGSLPLLVALIYVQKSLGSLNylvMNMWSQDMSSLWSS-----NLLWLACIMAFMVK 206
Cdd:PRK07691 147 LIVIGGTKIQ-LRESIKYVLINVVSSAFFVVAVAILYSVVGTLN---MADISVKIAELSAGqtgliTVVAILFLFVFATK 222
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 207 MPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLR-LTMILNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSL 285
Cdd:PRK07691 223 AGLFPLYFWLPGSYYAPPIAIAALFGALLTKVGVYAIARtFTLFFSHDTSFTHYLILILALLTIIFGVIGAVAYFDIKKI 302
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 286 IAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLASLT 365
Cdd:PRK07691 303 IIYNIMIAVGVILVGVAMMTESGMIGAIYYLIHDMIVKAALFLLIGIMIKITGTTDLKKMGGLIKRYPVLGWMFFIAALS 382
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|...
gi 108742982 366 NLALPPFINLIGELFVIMASFSWSNFTIIITGFNMLITALYSL 408
Cdd:PRK07691 383 LAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSV 425
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
115-405 4.98e-12

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 68.02  E-value: 4.98e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 115 LILFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQKSLGSLnylvmnmwsqDMSSLWSSN- 193
Cdd:PRK12647 117 LITLFVFWELTSITSFLLIGFNHEREAARRAALQALLVTGGGGLALLAGLILLGNVTGTY----------SLSELLASGd 186
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 194 --------LLWLACIM--AFmVKMPLYGLHLWLPKAhVEAPIAGSMVL-AAVLLKLGGYGMLRLTMILNPTtkimAYPFI 262
Cdd:PRK12647 187 virehplyLAILLLVLggAF-TKSAQFPFHFWLPNA-MEAPTPVSAYLhSATMVKAGIYLLARLNPVLGGT----PLWQT 260
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 263 MLCLWG---MIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHS 339
Cdd:PRK12647 261 ILPLFGgltMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLVAHSLYKGALFMVAGIIDHETGT 340
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 340 RTMLLARGLQAFLPLMATWWLLASLTNLALPPFINLIGELFVIMASF---SWSNFTIIITGF-NMLITAL 405
Cdd:PRK12647 341 RDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALLeapLWSLILTVAAVLgNALMVAV 410
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
145-372 6.90e-12

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 67.61  E-value: 6.90e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 145 AGLYFLFYTLIGSLPLLVALIYVQKSLGSLNYlvMNMWSQDMSSLWSSNLLWLAcIMAFMVKMPLYGLHLWLPKAHVEAP 224
Cdd:PRK06521 165 AGFLYLLMAHAGALAILLAFGLLARESGSYDF--AAMRAAHLSPFWASLVFLLA-LFGFGAKAGLVPLHVWLPRAHPAAP 241
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 225 IAGSMVLAAVLLKLGGYGMLRLTM-ILNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVA--- 300
Cdd:PRK06521 242 SHVSALMSGVMLKVAIYGILRVVFdLLGAPGWWWGVLVLALGAISAVLGVLYALAEHDLKRLLAYSTIENIGIIFVGlgl 321
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 301 --ILMQTPWSFMGATALMIA------HGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLASLTNLALPPF 372
Cdd:PRK06521 322 amVFIAYGMPLLAALALTAAlyhllnHALFKSLLFLGAGAVLHATGTRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPL 401
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
52-412 1.16e-11

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 66.51  E-value: 1.16e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  52 FSLTFFSDSLSSpLLMLTVWLLPLMIMASQHHLTKESLMRKKLYlSMLIFLQMFLIMTFTATELILFYILFESTLIPTLI 131
Cdd:PRK12663  69 FGIQFTGDSLSA-LMVTTASFVATAIMAYGFGDIEHSGRRYGFP-PFILLLMAGVIGSFLTGDLFNLYVWFEVMLIASFV 146
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 132 IITrWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQKSLGSLNYLVMNMWSQDMSSLWSSNLLWLACIMAFMVKMPLYG 211
Cdd:PRK12663 147 LIT-LGQEREQLRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLNMAHIAMRLNDMGDTATLTTIALLFLLAFGMKAALFP 225
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 212 LHlWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLR-LTMILNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSS 290
Cdd:PRK12663 226 FM-WLPAAYHTPNTEVAALFAALLTKVGIYALIRvFTLLFPQERELLHPLLATMAAITMVIGALGALAYKDIRRIAGYQV 304
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 291 VSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLASLTNLALP 370
Cdd:PRK12663 305 ISSIGFILLGLALGTPAGINGAIFYLVHDMVVKTALFLIAGSLVRLTGYRSLQYLGGLYRKEPLFGALFLILIFAIGGLP 384
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 108742982 371 PFINLIGELFVIMASFSWSNFTIIITgfnMLITALYSLYMLT 412
Cdd:PRK12663 385 PFSGFWGKVLLVQGALDNGAYILLAL---MLITSLITMYSLF 423
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
51-411 3.52e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 64.84  E-value: 3.52e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  51 NFSLTFFSDSLSSPLLMLT--VWLLPLM-IMASQHHLTKESLMRKKLYLSMLIFLQMFLIMTftaTELILFYILFESTLI 127
Cdd:PRK06589  74 NYSIGLHLEPLGLIFLLLIgfLWICALLyTPKYLAINNIDSSSRFLFFFNLTILIGVLIALS---SDLFTMFVCYELLTI 150
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 128 PTLIIITrWGNQTERLNAGLYFLFYTLIGSLPL-LVALIYVQKSLGSLNYLVMNMWSQDMSSLWSSNLLWLacimafMVK 206
Cdd:PRK06589 151 STAFLIG-HTRNNISLSGGYKYLKILMISALLLfLPAVILIYTKTGNLDFVSGGLFSKNQSIILLLMFIYG------IAK 223
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 207 MPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMI---LNPTTKI--MAYPFIMLCLWGMIMTSSICLRQTD 281
Cdd:PRK06589 224 TAIFPVHSWLPAAMVAHYPVSALLHAVIVVKTGLFCIYKILLYifgLSYLQRIfaEFNWLIFIPIVSIFYSSLKALKTDN 303
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 282 LKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLL 361
Cdd:PRK06589 304 IKKILAYSTISQLSLALLSAFILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDKLHGTSKSFPLISFIISI 383
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|..
gi 108742982 362 ASLTNLALPPFINLIGELFVIMASFSWSNFT--IIITGFNMLITALYSLYML 411
Cdd:PRK06589 384 SSLSLIGIPIFSGFISKFLILLAASEQNQPWlsIIVMLVVIASSILSALYLL 435
PRK12650 PRK12650
DUF4040 family protein;
95-330 5.29e-11

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 65.06  E-value: 5.29e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  95 YLSMLIFLQMFLIMTFtATELILFYILFESTLIPTLIIITRWGNQTErlNAGLYFLFYTLIGSLPLLVALIYVQKSLGSL 174
Cdd:PRK12650 113 YLLMTAFMAAMLLLVL-ADDVVVLFVAWELVSLASFFLIARSGSGGE--AGSIRTLILTFFGGLTLLAAVAIAATQTGTT 189
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 175 NY---LVMNMWSQDmSSLWSSNLLWLAciMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMILN 251
Cdd:PRK12650 190 SLsgiLHSDVWAEK-PGLTTVVAVLIA--VAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFH 266
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 108742982 252 PTTkIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLA 330
Cdd:PRK12650 267 DVA-VWNWLLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLI 344
PRK12646 PRK12646
DUF4040 family protein;
83-419 9.59e-11

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 64.01  E-value: 9.59e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  83 HLTKESLMRKKLYLSMLIFlqMF-LIMTFTATELILFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLL 161
Cdd:PRK12646 101 YLSSRKDNLPRFYFYLTLF--MFsMIGIVLSDNTILMYVFWELTSVSSFLLISYWYNNGDSQFGAIQSFMITVFGGLALL 178
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 162 VALIYVQKSLGSLNYL-VMNMWSQDMSSLWSSNLLWLACIMAFmVKMPLYGLHLWLPKAhVEAPIAGSMVL-AAVLLKLG 239
Cdd:PRK12646 179 VGFIMLYIMTGTNNITeILGQADHIKNHGLFIPMIFMFLLGAF-TKSAQFPFHIWLPRA-MAAPTPVSAYLhSATMVKAG 256
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 240 GYGMLRLTMILNpTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAI-----LMQTPWSFMGATA 314
Cdd:PRK12646 257 IFLLFRFTPLLG-LSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAMVgigggYAQHQQDAIASIY 335
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 315 LMIA---------HGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLASLTnLALPPFIN--LIGELF--- 380
Cdd:PRK12646 336 VFVLfaalfhlmnHAIFKCALFMGVGIIDHEAGTRDIRILSGMRQLFPKMNLVMTIAALS-MAGVPFLNgfLSKEMFlda 414
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*.
gi 108742982 381 ----VIMASFSWSnFTIIITGFNM---LITALYSLYMLTMTQRGKF 419
Cdd:PRK12646 415 ltqtGQLSQFSLI-SMIIIVFIGViasIFTFTYALYMVKEVFWGKY 459
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
75-405 5.24e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 61.27  E-value: 5.24e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  75 LMIMASQHHLTKESLMRKKLYLSMLIFLQMFLIMTftATELILFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTL 154
Cdd:PRK08376 105 LAVLYSISYMKHDTGLDKYYTLILLLELGMLGMAI--TGDLFNFFVFLEIMSIASYALVAFRNDTWEAIEAGIKYMFVGS 182
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 155 IGSLPLL--VALIYVQKSLGSLNYLVMNMwSQDMSSLWSSNLLWLacIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLa 232
Cdd:PRK08376 183 LASSMVLlgIALLYGQYGTLNMAYLAVKM-SENPTVVAKIALALF--IAGLAMKSGAVPVHMWLPDAYPAAPSSISAML- 258
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 233 aVLLKLGG-YGMLRLTM-ILNPTTKIMAYPFIMLCL--WGMIMTSSICLRQTDLKSLIAYSSVS---HMAL---VIVAIL 302
Cdd:PRK08376 259 -LVIKQAGlYALARVLFsIYGPAINLATVGWVIIILgcLTMFVGVAMAVVQKDVKRLLAYHSVSqigYMLLglgVGLAAL 337
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 303 MQTPWSFMGATAL------MIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLASLTNLALPPFINLI 376
Cdd:PRK08376 338 GDPAMASYGEIALaggiyhIVNHALYKALLFLTAGAVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFA 417
                        330       340
                 ....*....|....*....|....*....
gi 108742982 377 GELFVIMASFSwsnFTIIITGFNMLITAL 405
Cdd:PRK08376 418 SKWLIYESSAL---FNPILGVIAMIGSVL 443
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
155-396 1.74e-09

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 59.84  E-value: 1.74e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 155 IGSLPLLVALIYVQKSLGSLNYLVMNMWSQDMSSlwsSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAV 234
Cdd:PRK08042 145 LGTLLLAIACWLLWQRYGTLDLRLLDMRMQQLPL---GSDIWLLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTV 221
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 235 LLKLGGYGMLRLTMIlnpTTKIMAYPFIMLCLWGMImTSSI----CLRQTDLKSLIAYSSVSHMALV-------IVAILM 303
Cdd:PRK08042 222 VMKIGLLGILTLSLL---GGNAPLWWGVALLVLGMI-TAFVgglyALMEHNIQRLLAYHTLENIGIIllglgagVTGIAL 297
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 304 QTP----WSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWWLLASLTNLALPPFINLIGEL 379
Cdd:PRK08042 298 EQPaliaLGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEW 377
                        250
                 ....*....|....*..
gi 108742982 380 FVIMASFSWSNFTIIIT 396
Cdd:PRK08042 378 VIYQSFFKLSNSGAFVA 394
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
95-327 7.08e-08

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 54.90  E-value: 7.08e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  95 YLSMLIFLQMfliMTFTATELILFYilfestliptliiitrwgNQTERLNAGL-YFLFYTLIGSLpLLVALIYVQKSLGS 173
Cdd:PRK12668 115 LLTLFVFWEL---MAFTSTFLVWAR------------------GTKAAVRAGFrYLLVHVLGGVL-LLAGILLHYAETGS 172
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 174 LnyLVMNMWSQDMSSLWssnllwLACImAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRL---TMIL 250
Cdd:PRK12668 173 F--AFGAIAGLGGTAAW------LILI-GFGVNAAFPPLHAWLPDAYPEATVTGSVFLSAFTTKTAVYALARAfpgTELL 243
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 108742982 251 NPTTKIMA-YPFIMLCLwgmimtssiclrQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLF 327
Cdd:PRK12668 244 IYIGAAMAvYGVFFALL------------ENDLRRLLSYHIVSQVGYMVAGIGIGTALAINGAVAHAFNHILYKGLLF 309
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
119-447 1.15e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 53.97  E-value: 1.15e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 119 YILFESTLIPTLIIITRwGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQKSLGSLNYLVMNMWSQDMSSLWSSNLLWLA 198
Cdd:PRK12662 136 YVFLEISSISSYVLVAM-GRDKKALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLNMGDMFLIIQDLPTNRAIQIGVLF 214
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 199 CIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMI-----LNPTTKIMAYPFIMLCLWGMIMTS 273
Cdd:PRK12662 215 IMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVYDvfkanFVFTTLPFNNVFMILAALAIVFGS 294
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 274 SICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLP 353
Cdd:PRK12662 295 VLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHFGTTKLEDCLNLWKSMP 374
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 354 LMATWWLLASLTNLALPPFINLIGELFvIMASFSWSNFTIIITGFnMLITALYSLYMLTMTQRGKFtyhihniKPSYTRE 433
Cdd:PRK12662 375 KITLAFVLLSLSLIGMPPTSGFVAKWY-ILDAFIKSNAWIGLVVL-LVGSGLSVIYVWKIVEALYF-------ESRMVES 445
                        330
                 ....*....|....
gi 108742982 434 NTLMSMHMLPLIML 447
Cdd:PRK12662 446 KANDKAFKTPNAMV 459
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
95-414 1.33e-07

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 53.93  E-value: 1.33e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  95 YLSMLIFLQMFLImtfTATELILFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQKSLGSL 174
Cdd:MTH00020 116 YLSLFTFLMVVLV---TSDNYLQLFIGWEGVGLCSYLLINFWLTRIEANKAAIKAMLVNRVGDIGLLLAMFLLWDRFGSL 192
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 175 NYL-VMNMwsqdMSSLWSSNLLWLaCIMAF---MVKMPLYGLHLWLPKAH-----VEAPI-AGSMVLAAVLLklggygML 244
Cdd:MTH00020 193 DFSsVFNM----VVSAPSSDITLI-CLFLFigaVGKSAQLGLHTWLPDAMegptpVSALIhAATMVTAGVFL------LI 261
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 245 RLTMILNPTTKIMAYPFIMLCLwGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQtpwSFMGATALMIAHGLTSS 324
Cdd:MTH00020 262 RSSPLFEQAPLALIIVTIVGSL-TVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLS---HYSISLFHLMNHAFFKA 337
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 325 MLFCLANSnyeRIHS----RTMLLARGLQAFLPLMATWWLLASLTNLALPPFINLIGELFVIMASFS--WSNFTIIITGF 398
Cdd:MTH00020 338 LLFLSAGS---VIHAlsdeQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGqyYLIFAYWLGCF 414
                        330
                 ....*....|....*.
gi 108742982 399 NMLITALYSLYMLTMT 414
Cdd:MTH00020 415 SALLTAFYSIRLIYLT 430
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
59-393 2.08e-07

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 53.42  E-value: 2.08e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKL-YLSMLIFLQMFLImtfTATELILFYILFESTLIPTLIIITRWG 137
Cdd:MTH00032  79 DTLSVTMLLVISSISTLVHIYSTSYMSDDPHVPRFLcYLSLFTFLMMVLV---TSDNYLQLFIGWEGVGVCSYLLVAFWT 155
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 138 NQTERLNAGLYFLFYTLIGSLPLLVALIYVQKSLGSLNYLVMN---MWSQDMSSLWSSNLLWLACIMAFMV--------- 205
Cdd:MTH00032 156 TRIQANKAAIKAIVVNRVGDVGVILGMVLIYKTIGSLDFLTFNggsVGSGIMDRGYYGGGAYESPLAPFAIigillligc 235
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 206 --KMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTmilnPTTKIMAYPFIMLCLWGMI---MTSSICLRQT 280
Cdd:MTH00032 236 igKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSF----PLFEKAPLTLLIITIFGALtafFAATVGLVQN 311
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 281 DLKSLIAYSSVSHMALVIVAILMQTpwSFMGATALMIAHGLTSSMLFCLANSnyeRIHSRT-----MLLARGLQAFLPLM 355
Cdd:MTH00032 312 DLKKVIAYSTCSQLGYMVLIIGIEG--SHNVGLFHLVNHAFFKALLFLSAGS---VIHSTTvdeqdMRKMGGLIHSIPFT 386
                        330       340       350
                 ....*....|....*....|....*....|....*...
gi 108742982 356 ATWWLLASLTNLALPPFINLIGELFVIMASFSWSNFTI 393
Cdd:MTH00032 387 YTMMLIGSFSIMGLPYLTGFYSKDLILELTYSGRNMGI 424
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
53-371 6.92e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 51.75  E-value: 6.92e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  53 SLTFFSDSLSSpLLMLTVWLLPLMIMA--SQHHLTKESLMRKKLYLsmLIFLQMFLIMTFTATELILFyILFESTLIPTL 130
Cdd:PRK12649  73 EFSIYADGLAV-LIGLIASGIGVIIMSysNGYMSHKEDLPRYYQYL--LLFMGSMIGMVFSGNTIQLF-IFWELTSITSF 148
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 131 IIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQKSLGSLNYLVMNMWSQDMSSLWSSNLLWLACIMAFM---VKM 207
Cdd:PRK12649 149 MLIGYWRHRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELIENIKGHPLFLITLILIFIgaaAKS 228
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 208 PLYGLHLWLPKAhVEAPIAGSMVL-AAVLLKLGGYGMLRLTMILNPTTKImaypFIMLCLWGMI---MTSSICLRQTDLK 283
Cdd:PRK12649 229 AQGPFYIWLPNA-MEAPTPVSAFLhSATMVKAGVYLVARIHPIFSGTEAW----FILVSGTGMItmvLAGFLAFRQTDIK 303
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 284 SLIAYSSVSHMALVIVAILMQTP----WSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLMATWW 359
Cdd:PRK12649 304 AILAYSTISQLAYLMTMYGYTTYhepgLGVAAATFHLLNHATFKACLFLVAGIVAHEAATRDIRKLGGLRKEMPITFIVA 383
                        330
                 ....*....|..
gi 108742982 360 LLASLTNLALPP 371
Cdd:PRK12649 384 SIAALAMAGIPP 395
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
111-327 9.35e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 51.46  E-value: 9.35e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 111 TATELILFYILFESTLIPTLIIItrwGNQTERLN---AGLYFLFYTLIGSLPLLVALIYVQKSLGSlnYLVmnmwSQDMS 187
Cdd:PRK12644 124 TSDNLLLLYVFWELTTVLSFLLI---GHYAERAAsrrAALQALLVTTAGGLAMLVGIIILGQAAGT--YRL----SELLA 194
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 188 SLWSSNLLWLA--CIMAFMV-KMPLYGLHLWLPKAhVEAPIAGSMVL-AAVLLKLGGYGMLRLTMILNpTTKIMAYPFIM 263
Cdd:PRK12644 195 DPPTGPAVSVAvvLILVGALsKSAIVPFHFWLPGA-MAAPTPVSAYLhAAAMVKAGIYLVARLAPGFA-DVPVWRPTVLV 272
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 108742982 264 LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLF 327
Cdd:PRK12644 273 LGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLAMLLAHALFKAALF 336
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
9-384 1.72e-06

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 50.11  E-value: 1.72e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982   9 IMLFPVIWYSNSSMIWINMTSYSLMISLMTLpLLNQTESNSNNFSLTFFSDSLSSPLLMLTVWLLPLMIMASQHHLTKES 88
Cdd:COG1007   20 LLLLDLFLPRRSRRLLAGLALLGLLLALALL-LLALGGGTGTAFGGMFVVDGFALFFKLLILLAALLVLLLSRDYLERRG 98
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  89 LMRKKLYLSMLIFL--QMFLIMtftATELILFYILFESTLIPTLIIITRWGNQTERLNAGL-YFLFYTLIGSLPLL-VAL 164
Cdd:COG1007   99 LLRGEFYALLLFATlgMMLMAS---ANDLLTLFLGLELLSLSLYVLVAFRRDDRRSSEAALkYFLLGALSSGFLLYgISL 175
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 165 IYVqkSLGSLNYLVMNMWSQDMSSlwSSNLLWLACIM---AFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLlKLGGY 241
Cdd:COG1007  176 LYG--ATGSLNLAGIAAALAAGGA--NSPLLLLGLVLvlaGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAP-KIAAF 250
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 242 GML-RLTMI-LNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAH 319
Cdd:COG1007  251 AALlRLLVEaFPGLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAY 330
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 108742982 320 GLTSSMLF-CLANSNYERIHSRTMLLARGLQAFLPLMAtWWLLASLTNLA-LPPFINLIGELFVIMA 384
Cdd:COG1007  331 LFMNLGAFaVILLLSRKGGEAEEIEDLAGLARRSPLLA-LAMTIFLLSLAgIPPTAGFFGKFYVFSA 396
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
186-419 1.50e-05

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 47.33  E-value: 1.50e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 186 MSSLWSSNLL--WLACIMAFMV------KMPLYGLHLWLPKAhVEAPI-------AGSMVLAAVLLklggygMLRLTMIL 250
Cdd:PRK07376 212 LSELVSSGAVsgWLALLLCILVflgpmaKSAQFPLHVWLPDA-MEGPTpisalihAATMVAAGVFL------VARMYPVF 284
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 251 NPttkimaYPFIMLCL-WGMIMTS----SICLRQTDLKSLIAYSSVSHMALVIVAilmqtpwsfMGATAL------MIAH 319
Cdd:PRK07376 285 EQ------FPAVMTVIaWTGAITAflgaSIALTQNDIKKGLAYSTISQLGYMVMA---------MGCGAYsaglfhLMTH 349
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 320 GLTSSMLFCLANS---------NYERIHSRTMLLARGLQAFLPLMATWWLLASLTNLALPPFINLIGELFVIMASFSWSN 390
Cdd:PRK07376 350 AYFKAMLFLGSGSvihgmeevvGHDPVLAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEANP 429
                        250       260
                 ....*....|....*....|....*....
gi 108742982 391 FTIIITGFNMLITALYSLYMLTMTQRGKF 419
Cdd:PRK07376 430 ALWFVGFLTAGMTAFYMFRMYFLTFEGEF 458
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
23-408 1.88e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 46.89  E-value: 1.88e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  23 IWINMTSYSLMISLmtlplLNQTESNSNNFSLTFFSDSLSspLLMLTVWLL-PLMIMASQHHLTKESLMRKKLYLSMLIF 101
Cdd:MTH00208  75 IWILLGCPNINISL-----SNWLSNTLFNFSLSFIFDFYF--ILFFSVALFvTWSIIEFSHYYMSNDPNKNAFFRLLIIF 147
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 102 LQMFLIMTFTaTELILFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALiyvqkslgSLNYLVMNM 181
Cdd:MTH00208 148 LLNMLILTSS-NNLFLLFIGWEGVGFLSFLLISWWTTRNDANSSALQAVIYNRIGDIGIILFL--------SLSLINFNS 218
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 182 WS-QDMSSL-----WSSNLLWLACIMAFMVKMPLYGLHLWLPKAhVEAPIAGS-------MVLAAVLLklggygMLRLTM 248
Cdd:MTH00208 219 WNlNEILSLnnsnsFLINILLFGILLAAAGKSAQFGLHPWLPAA-MEGPTPVSallhsstMVVAGVFL------LIRTSP 291
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 249 ILNPTTKIMAYPFIMLCLWGmIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSfmgATALMIAHGLTSSMLFC 328
Cdd:MTH00208 292 LISNSPWFLSLCLILGSLTA-LFAASTAISQHDIKKIIAYSTTSQLGLMVVAIGLNQPNL---ALFHICTHAFFKAMLFL 367
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 329 LANSnyeRIHS-------RTMllaRGLQAFLPLMATWWLLASLTnLALPPFI------NLIGELFVImasfSWSNFTIII 395
Cdd:MTH00208 368 CSGS---IIHSlnneqdlRKM---GGLSFLLPVTSSCIILGSLA-LMGTPFLagfyskDLILEAGLA----SISNLLSII 436
                        410
                 ....*....|....
gi 108742982 396 TGF-NMLITALYSL 408
Cdd:MTH00208 437 LALiATLLTAVYSF 450
PRK12666 PRK12666
putative monovalent cation/H+ antiporter subunit D; Reviewed
137-402 2.08e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237166 [Multi-domain]  Cd Length: 528  Bit Score: 46.77  E-value: 2.08e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 137 GNQTERLNAGLYFLFYTLIGSLPLL--VALIYvqKSLGSLNylvMNMWSQDMSSLWSSN--LLWLACIM---AFMVKMPL 209
Cdd:PRK12666 152 GSGRARVRAGLHYVAINLVASSLFLigVGLIY--GVTGTLN---MADLAQRIAQLPAADraLLEAGAALllvVFLIKAAM 226
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 210 YGLHLWLPKAHVEA--PIAGsmvLAAVLLKLGGYGMLRL-TMILNPTTKIMAYPFIMLCLWGMIMTSSI----CLRQTDL 282
Cdd:PRK12666 227 WPLNFWLPPAYAAAsaPVAA---LFAIMTKVGIYAILRLsTLLFGPEAGASAGFGQDWLLPGGLATLAFgaigVLAAQRL 303
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 283 KSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLAN-----------------SNYERIHSRTMLLA 345
Cdd:PRK12666 304 RRLAAYLVLVSSGTLLAAIGLGNPAATAAALYYLVHSTLAAAALFLLADlverqrgaaadrlavtpELYDLDEEEEEEVG 383
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 108742982 346 RGLQAFLPLMATWWLLASLTNLALPPFINLIGELFVIMASFS--------WSNFTIIITGFNMLI 402
Cdd:PRK12666 384 VAIPATMALLGLLFFICALALAGLPPLSGFLGKFALLQALLNppgagaawWLWALVLLSGLAALI 448
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
95-387 1.81e-04

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 43.66  E-value: 1.81e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  95 YLSMLIFLQMFLIMTftATELILFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLL--VALIYVqkSLG 172
Cdd:PRK05777 107 LLVLFALLGMMVMVS--ANDLLTLFLGLELLSLPLYALAALRRDRRRSLEAAIKYFVLGALASGFLLygMSLLYG--ATG 182
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 173 SLNYLVMNMWSQDMSSlwSSNLLWLACIM---AFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLlKLGGYGM-LR-LT 247
Cdd:PRK05777 183 SLSFAGIAKALADGSG--NSLLLLFGLVFllvGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAP-KIAAFAVlLRlLV 259
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 248 MILNPTTKIMAYPFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTS---- 323
Cdd:PRK05777 260 VAFGGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFMTlgaf 339
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 108742982 324 SMLFCLANSNYERIHSRTMllaRGLQAFLPLMATWWLLASLTNLALPPFINLIGELFVIMASFS 387
Cdd:PRK05777 340 GVISLLRRKGGEAESISDF---AGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVE 400
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
91-327 2.42e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 43.40  E-value: 2.42e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  91 RKKLYLSMLIFLQMFLIMTFTATELILFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQKS 170
Cdd:MTH00211 108 NINRFFKYLLLFLIFMLILVSANNLFQLFIGWEGVGIMSFLLISWWYGRSDANTAALQAVIYNRIGDIGLLLSMVWLLLN 187
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 171 LGSLNYlvmnmwSQDMSSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAhVEAPIAGS-------MVLAAVLLklggygM 243
Cdd:MTH00211 188 LNSWEI------SQLFILNLDLTLFLLGLLLAAMGKSAQFGFHPWLPSA-MEGPTPVSallhsstMVVAGVFL------L 254
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 244 LRLTMILNPTTKIMAypfIMLCLWG--MIMTSSICLRQTDLKSLIAYSSVSHMALVIVAI-LMQTPWSFMgataLMIAHG 320
Cdd:MTH00211 255 IRLSPLFQNNQLILG---AVLLLGAltMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLgLNQPQLAFL----HICTHA 327

                 ....*..
gi 108742982 321 LTSSMLF 327
Cdd:MTH00211 328 FFKAMLF 334
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
99-384 2.75e-04

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 43.10  E-value: 2.75e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  99 LIFLQMFLIMTftATELILFYILFESTLIPTLIIITRWGNQTERLNAGL-YFLFYTLIGSLPLL-VALIYVQKSLGSLNY 176
Cdd:MTH00196   1 MVALGILCLIS--SSNWLSVYLAIELQTLSLFILIAQNRGSGYSAEAGLkYFVLGALSSGLFLFgCALLCGTTGGLHLSY 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 177 LVMNMWSQDMSSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPiagsMVLAAVLLKLGGYGMLRLTMILNPTTKI 256
Cdd:MTH00196  79 INLVLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAP----TKTTALLAIVPKLGIFSILVSIGLNVNI 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 257 maypFIMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFC--LANSNY 334
Cdd:MTH00196 155 ----LLIGGLFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFESIQASLVYLFIYIIMSICVFSiiLALNVY 230
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 108742982 335 erihsRTMLLA-RGLQAFLPLMATWWLLASLTNLALPPFINLIGELFVIMA 384
Cdd:MTH00196 231 -----KNLIIEfSGLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLS 276
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
262-387 4.69e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 42.33  E-value: 4.69e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 262 IMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRT 341
Cdd:PRK06277 270 IALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAINHVIYKSALFLGAGIVSYRTKTSN 349
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 108742982 342 MLLARGLQAFLPLMATWWLLASLTNLALPPFINLIGELFVIMASFS 387
Cdd:PRK06277 350 LRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQAAMQ 395
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
1-457 1.08e-03

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 41.30  E-value: 1.08e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982   1 MLKIIMPTIMLFPVIWYSNSSMIWINMTSYSLMISL--MTLPLLNQTESNSNNFSLTF---FSDSLSSPLLMLTVWLLP- 74
Cdd:MTH00004  13 LLILLTPILLPLLSKNLKNSPTTIKTTVKLAFLISLipLTLFLNSGTESITTNWPWIFtttFNIPISFKLDQYSLMFLPi 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  75 -LMI-----------MASQHHLTKeslmrKKLYLsmLIFLQMFLIMTfTATELILFYILFESTLIPTLIIITRWGNQTER 142
Cdd:MTH00004  93 aLFVtwsilefstwyMASDPHITK-----FFKYL--LIFLIAMLILI-TANNMFQLFIGWEGVGIMSFLLIGWWSGRAEA 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 143 LNAGLYFLFYTLIGSLPLLValiyvqkslgSLNYLVMNMWSQDMSSLWSSN----LLWLACIMAFMVKMPLYGLHLWLPK 218
Cdd:MTH00004 165 NTAALQAIIYNRIGDIGLIL----------SMAWLAMTLNTWEIQQLFSPTqtptLPLLGLILAATGKSAQFGLHPWLPA 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 219 AhVEAPIAGS-------MVLAAVLLklggygMLRLTMILNPTTKIMaypfiMLCLWGMIMTS---SIC-LRQTDLKSLIA 287
Cdd:MTH00004 235 A-MEGPTPVSallhsstMVVAGIFL------LIRTHPLLQNNQTAL-----TICLCLGALTTlfaATCaLTQNDIKKIIA 302
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 288 YSSVSHMALVIVAI-LMQTPWSFMGatalMIAHGLTSSMLFCLANSnyeRIHS-------RTMllaRGLQAFLPLMATWW 359
Cdd:MTH00004 303 FSTSSQLGLMMVTIgLNQPQLAFLH----ISTHAFFKAMLFLCSGS---IIHNlnneqdiRKM---GGLQKTLPITSSCL 372
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 360 LLASLTnLALPPFI------NLIGElfVIMASF--SWsnfTIIITGFNMLITALYSLYMLTMTQRGkftyhihnikpsYT 431
Cdd:MTH00004 373 TIGNLA-LMGTPFLsgfyskDTIIE--TLNTSYlnAW---ALLLTLLATSFTAAYSLRMILLVQTG------------FP 434
                        490       500       510
                 ....*....|....*....|....*....|..
gi 108742982 432 RENTLMSMH------MLPLIMLTFNpKIIMGL 457
Cdd:MTH00004 435 RTPPTTPINentptiINPITRLALG-SILAGL 465
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
98-301 1.17e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 41.43  E-value: 1.17e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  98 MLIFLQMFLIMTfTATELILFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQKSLGSLNYl 177
Cdd:MTH00066 119 LLIFLIAMMILV-TANNLFQLFIGWEGVGIMSFLLIGWWHARADANTAALQAVLYNRVGDIGLILSMAWLAMNTNSWEL- 196
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 178 vmnmwsQDMSSLWSSN-LLWLACIMAFMVKMPLYGLHLWLPKAhVEAPIAGS-------MVLAAVLLklggygMLRL-TM 248
Cdd:MTH00066 197 ------QQIFLLNDNStLPLLGLILAAAGKSAQFGLHPWLPAA-MEGPTPVSallhsstMVVAGIFL------LIRFhPL 263
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 108742982 249 ILNPTTKIMaypfIMLCLWGM--IMTSSICLRQTDLKSLIAYSSVSHMALVIVAI 301
Cdd:MTH00066 264 LENNQTALT----ICLCLGALttLFTAACALTQNDIKKIVAFSTSSQLGLMMVTI 314
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
92-364 1.94e-03

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 40.54  E-value: 1.94e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982  92 KKLYLSMLIFLQMFLIMTFTATELILFYILFESTLIPTLIIITRWGNQTErlnAGLYFLFYTLIGSLPLLVALIYVQKSL 171
Cdd:PRK06459  71 GKWLSSLYILTILGMAIVLTSDNYLLFLAGWEIMTIPSYVAIALTKKNKR---PAFVFMAFGELSTVLILAGFAWAFIIS 147
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 172 GSLNYlvmnmwsqdmsSLWSSNLLWLACIMAFMVKMPLYGLHL--WLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTMI 249
Cdd:PRK06459 148 GTTNF-----------SYLPSPVPLILASFGFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTLMGVYGILKMTIL 216
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108742982 250 LNPTTKIMAYPFIMLCLWGMIMTSSICLRQTD-LKSLIAYSSVSHMALVIVAI--------LMQTPWSFMGATALM--IA 318
Cdd:PRK06459 217 TQTIPIGYFGLTILAIGAFSILFGALYAYVSEnVKGLLAFSTIENNGAILVALglymvtkqLITSIEHFSLITVILysFA 296
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 108742982 319 HGLTSSMLFC------------LANSNYERIHSRTMLLARGLQAFLPL---MATWWLLASL 364
Cdd:PRK06459 297 HSVAKTGLFLssglqekqsitySKKIRNRWIELGLTLLASSLSGLLPNiggVASWLLLESL 357
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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