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Conserved domains on  [gi|110432575|gb|ABG73880|]
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NADH dehydrogenase subunit 4 (mitochondrion) [Lepilemur mustelinus]

Protein Classification

NADH dehydrogenase subunit 4( domain architecture ID 11475903)

NADH dehydrogenase subunit 4 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
1-459 0e+00

NADH dehydrogenase subunit 4; Provisional


:

Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 727.07  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575   1 MLKIIVPTAMLLPVIWYSTNPMTWMNITLHSLTISLMSLFLFSQADTNSNNFSPTFFSDPLSSPLLVLTMWLLPLTVVAS 80
Cdd:MTH00110   1 MLKIIIPTIMLIPLTWLSKNNMIWINTTTYSLLISLISLLLLNQPNDNSLNFSLLFFSDSLSTPLLILTTWLLPLMLMAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  81 QYHLTKEPWERKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPL 160
Cdd:MTH00110  81 QHHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 161 LVALSYIQSSMGTLNLFMMTYWLQELPNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGG 240
Cdd:MTH00110 161 LVALLYIQNNLGSLNFLLLQLWAQPLPNSWSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 241 YGMMRITMILNPLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSLMGATTLMIAHG 320
Cdd:MTH00110 241 YGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 321 LTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGLNM 400
Cdd:MTH00110 321 LTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNM 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 110432575 401 LVTATYSLYMLTTTQRGKSPYHMQNFSPSLTRENTLMSMHILPLLLLTLNPKILMGPTY 459
Cdd:MTH00110 401 LITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGPTY 459
 
Name Accession Description Interval E-value
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
1-459 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 727.07  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575   1 MLKIIVPTAMLLPVIWYSTNPMTWMNITLHSLTISLMSLFLFSQADTNSNNFSPTFFSDPLSSPLLVLTMWLLPLTVVAS 80
Cdd:MTH00110   1 MLKIIIPTIMLIPLTWLSKNNMIWINTTTYSLLISLISLLLLNQPNDNSLNFSLLFFSDSLSTPLLILTTWLLPLMLMAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  81 QYHLTKEPWERKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPL 160
Cdd:MTH00110  81 QHHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 161 LVALSYIQSSMGTLNLFMMTYWLQELPNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGG 240
Cdd:MTH00110 161 LVALLYIQNNLGSLNFLLLQLWAQPLPNSWSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 241 YGMMRITMILNPLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSLMGATTLMIAHG 320
Cdd:MTH00110 241 YGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 321 LTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGLNM 400
Cdd:MTH00110 321 LTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNM 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 110432575 401 LVTATYSLYMLTTTQRGKSPYHMQNFSPSLTRENTLMSMHILPLLLLTLNPKILMGPTY 459
Cdd:MTH00110 401 LITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGPTY 459
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
59-411 5.45e-74

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 240.37  E-value: 5.45e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  59 DPLSSPLLVLTMWLLPLTVVASqyhlTKEPWERKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGN 138
Cdd:COG1008   81 DGISLPLVLLTALLTPLAILAS----WNEIKKRPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLIGIWGG 156
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 139 QtERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPNSWSnYLLWTACIMAFMIKMPLYGLHMWLPK 218
Cdd:COG1008  157 E-RRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAELAAAPLPLTAQ-LLLFLAFFIAFAVKVPMFPFHTWLPD 234
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 219 AHVEAPIAGSMILAAILLKLGGYGMMRITMILNPL-TKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALV 297
Cdd:COG1008  235 AHVEAPTAGSVLLAGVLLKMGGYGLLRFALPLFPEaSAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 298 IMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLIG 377
Cdd:COG1008  315 LLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVG 394
                        330       340       350
                 ....*....|....*....|....*....|....
gi 110432575 378 ELLVTMAAFSWSNTTIILTGLNMLVTATYSLYML 411
Cdd:COG1008  395 EFLVLLGAFQVNPWLAILAALGLILTAAYLLWMY 428
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
59-459 4.96e-70

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 229.83  E-value: 4.96e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575   59 DPLSSPLLVLTMWLLPLTVVASQYHLTKepweRKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGN 138
Cdd:TIGR01972  76 DGISLLLVLLTALLTLLAILASWESIQK----RVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGG 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  139 QTeRLNAGLYFLFYTLTGSLPLLVALSYIQSSMGtlNLFMMTYWLQELPNSWSNYLLWTACIMAFMIKMPLYGLHMWLPK 218
Cdd:TIGR01972 152 PN-RIYAAMKFFLYTLAGSLLMLLAILGLYFLGG--GTFDLLELLNLPLPFGVQTWLFLAFFIAFAVKVPLFPLHTWLPD 228
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  219 AHVEAPIAGSMILAAILLKLGGYGMMRITMILNP-LTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALV 297
Cdd:TIGR01972 229 AHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFV 308
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  298 IMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLIG 377
Cdd:TIGR01972 309 LLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVG 388
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  378 ELLVTMAAFSWSNTTIILTGLNMLVTATYSLYMLTTTQRG-KSPYHMQNFSPSLTRENTLMSMHILPLLLLTLNPKILMG 456
Cdd:TIGR01972 389 EFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLYKRVFFGeLSNPEVAEFPDLNGREIAVLAPLVVLILFLGLYPNPLLD 468

                  ...
gi 110432575  457 PTY 459
Cdd:TIGR01972 469 LTE 471
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
113-398 3.56e-66

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 214.10  E-value: 3.56e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  113 TELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPNSWSN 192
Cdd:pfam00361   2 NDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNSSGL 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  193 YLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKSMAYPFLMLCLWGMIMT 272
Cdd:pfam00361  82 LLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLG 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  273 SLICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANS-NYERVHSRTMLLARGLQAL 351
Cdd:pfam00361 162 SLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSvIYRRVHTRNIRDYGGLAKT 241
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 110432575  352 LPLMSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGL 398
Cdd:pfam00361 242 MPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGV 288
 
Name Accession Description Interval E-value
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
1-459 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 727.07  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575   1 MLKIIVPTAMLLPVIWYSTNPMTWMNITLHSLTISLMSLFLFSQADTNSNNFSPTFFSDPLSSPLLVLTMWLLPLTVVAS 80
Cdd:MTH00110   1 MLKIIIPTIMLIPLTWLSKNNMIWINTTTYSLLISLISLLLLNQPNDNSLNFSLLFFSDSLSTPLLILTTWLLPLMLMAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  81 QYHLTKEPWERKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPL 160
Cdd:MTH00110  81 QHHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 161 LVALSYIQSSMGTLNLFMMTYWLQELPNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGG 240
Cdd:MTH00110 161 LVALLYIQNNLGSLNFLLLQLWAQPLPNSWSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 241 YGMMRITMILNPLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSLMGATTLMIAHG 320
Cdd:MTH00110 241 YGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 321 LTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGLNM 400
Cdd:MTH00110 321 LTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNM 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 110432575 401 LVTATYSLYMLTTTQRGKSPYHMQNFSPSLTRENTLMSMHILPLLLLTLNPKILMGPTY 459
Cdd:MTH00110 401 LITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGPTY 459
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
1-457 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 604.11  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575   1 MLKIIVPTAMLLPVIWYSTNPMTWMNITLHSLTISLMSLFLFSQADTNSNNFSPTFFSDPLSSPLLVLTMWLLPLTVVAS 80
Cdd:MTH00124   1 MLKIILPTIMLIPTTLLSKPKFLWTNTTTYSLLIALLSLQWLKPPYYPTKNLTQWLGIDQISAPLLVLSCWLLPLMILAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  81 QYHLTKEPWERKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPL 160
Cdd:MTH00124  81 QNHLQHEPLQRKRTFLTTLILLQTFLILAFSATELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLISSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 161 LVALSYIQSSMGTLNLFMMTYWLQELPNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGG 240
Cdd:MTH00124 161 LIAILYLHNQTGTLSLPMLQLTHPTLTNSWTNLLLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 241 YGMMRITMILNPLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSLMGATTLMIAHG 320
Cdd:MTH00124 241 YGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 321 LTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGLNM 400
Cdd:MTH00124 321 LTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLAT 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 110432575 401 LVTATYSLYMLTTTQRGKSPYHMQNFSPSLTRENTLMSMHILPLLLLTLNPKILMGP 457
Cdd:MTH00124 401 LITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
1-456 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 566.08  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575   1 MLKIIVPTAMLLPVIWYSTNPMTWMNITLHSLTISLMSLFLFSQADTNSNNFSPTFFSDPLSSPLLVLTMWLLPLTVVAS 80
Cdd:MTH00068   1 MLKIIIPTLMLLPTTWLSPKKWLWTLTTTNSLIIAFLSLMWFNLPSETMNFTNKYFGIDQISSPLLILTCWLLPLMILAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  81 QYHLTKEPWERKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPL 160
Cdd:MTH00068  81 QNHLKNEPINRQRTYISMLIILQLTLILAFSATELILFYIFFEATLIPTLIIITRWGNQEERLNAGTYFLFYTLAGSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 161 LVALSYIQSSMGTLNLFMMTYWLQELPNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGG 240
Cdd:MTH00068 161 LIALLILQNSLGSLSLILLELMSPMQLMTYTNKIWWLACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 241 YGMMRITMILNPLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSLMGATTLMIAHG 320
Cdd:MTH00068 241 YGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 321 LTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGLNM 400
Cdd:MTH00068 321 LTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGLGT 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 110432575 401 LVTATYSLYMLTTTQRGKSPYHMQNFSPSLTRENTLMSMHILPLLLLTLNPKILMG 456
Cdd:MTH00068 401 LITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILKPELISG 456
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
1-458 1.00e-168

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 482.53  E-value: 1.00e-168
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575   1 MLKIIVPTAMLLPVIWYSTNPMTWMNITLHSLTISLMSLF-LFSQADTNSNNFSPTFFSDPLSSPLLVLTMWLLPLTVVA 79
Cdd:MTH00127   1 MLKILIPTLMLIPTTWLTPAKWLWTTTLAHSLLIALASLTwLKNLSETGWSSLNLYMATDPLSTPLLVLTCWLLPLMILA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  80 SQYHLTKEPWERKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLP 159
Cdd:MTH00127  81 SQNHTAPEPINRQRMYITLLTSLQIFLILAFGATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLP 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 160 LLVALSYIQSSMGTLNLFMMTYWLQELPNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLG 239
Cdd:MTH00127 161 LLVALLLLQNSTGTLSMLTLQYSQPLQLSSWADKLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 240 GYGMMRITMILNPLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSLMGATTLMIAH 319
Cdd:MTH00127 241 GYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAH 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 320 GLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGLN 399
Cdd:MTH00127 321 GLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGLG 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 110432575 400 MLVTATYSLYMLTTTQRGKSPYHMQNFSPSLTRENTLMSMHILPLLLLTLNPKILMGPT 458
Cdd:MTH00127 401 TLITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPLLLLILKPELIWGWT 459
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
3-454 4.75e-157

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 452.47  E-value: 4.75e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575   3 KIIVPTAMLLPVIWYSTNPMTWMNITLHSLTISLMSLFLFSQADTNSNNFSPTFFS-DPLSSPLLVLTMWLLPLTVVASQ 81
Cdd:MTH00206   1 KILIPLIMLLLMTILSKKKWLWRSTTFFSFLIALLFLLWFKWSSEVGWSFSNLYLSyDPLSSPLVILSCWLLPLMFLASQ 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  82 YHLTKEPWERKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLL 161
Cdd:MTH00206  81 NHMKNEPINRQRIYITLLIVLQLFLILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 162 VALSYIQSSMGTLNLFMMTYwlqELPNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGY 241
Cdd:MTH00206 161 IALLFLQNSLGSLSLYILYF---SKLTTWNNNLWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGY 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 242 GMMRITMILNPLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSLMGATTLMIAHGL 321
Cdd:MTH00206 238 GMMRIILILGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGL 317
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 322 TSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGLNML 401
Cdd:MTH00206 318 VSSALFCLANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFL 397
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|...
gi 110432575 402 VTATYSLYMLTTTQRGKSPYHMQNFSPSLTRENTLMSMHILPLLLLTLNPKIL 454
Cdd:MTH00206 398 FTAIYSLYMFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPVILLILNPNLI 450
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
1-455 5.94e-142

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 414.37  E-value: 5.94e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575   1 MLKIIVPTAMLLPVIWYSTNPMTWMNITLHSLTISLMSLFLFS-QADTNSNNFSPTFFSDPLSSPLLVLTMWLLPLTVVA 79
Cdd:MTH00044   1 MITLILLSLGIAITSWIVPKNKLWPISISQSSLISLLSLFLLNnHWSSSWHNLSLSLATDSLSSPLIILSCWLAPLSLLA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  80 SQYHLTKEPWERKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLP 159
Cdd:MTH00044  81 SINHLSNNSPNNQRTFISLIIIILTALIITFSSLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLP 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 160 LLVALSYIQSSMGTLNLFMMTYWLQELPNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLG 239
Cdd:MTH00044 161 LLISLIAIYSSSSSLSIPLSELNWLTSLSSNSSSIWWIFCILAFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 240 GYGMMRITMILN-PLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSLMGATTLMIA 318
Cdd:MTH00044 241 GYGLIRLINLFSlPSANNISFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIA 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 319 HGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGL 398
Cdd:MTH00044 321 HGLVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIGL 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 110432575 399 NMLVTATYSLYMLTTTQRGKSPYHMQNFSPSLTRENTLMSMHILPLLLLTLNPKILM 455
Cdd:MTH00044 401 ATVFGAIYSLLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPLILIIINPNIIL 457
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
37-441 2.05e-115

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 344.90  E-value: 2.05e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  37 MSLFLFSQADTNSNNFSPTFFSDPLSSPLLVLTMWLLPLTVVASQYHLTKEPWERKkhFLSTLISLQLLLVMTFATTELI 116
Cdd:MTH00150   1 LSLLLLYSSFSSYESLSELFSVDSMSSLLISLSLWISGLMMLASQKSVKLRNKSSS--FSLLVLLLCLILVLAFSVSSLL 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 117 MFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPNSWsnyLLW 196
Cdd:MTH00150  79 MFYFFFEASLIPTLLLILGWGYQPERLQAGMYMMLYTVGASLPLLLVILWMSSSYGSSFMLLISSLRKLLSSMG---LWG 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 197 TACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKSMAYPFLMLCLWGMIMTSLIC 276
Cdd:MTH00150 156 LLVFLAFLVKLPMYPFHLWLPKAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLIC 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 277 LRQTDLKSLIAYSSVSHMALVIMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMS 356
Cdd:MTH00150 236 LRQSDVKSLIAYSSVGHMSLVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLS 315
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 357 TWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGLNMLVTATYSLYMLTTTQRGKSPYHMQNFSPSLTRENTL 436
Cdd:MTH00150 316 LWWFLFCIINMAAPPSLNLLSEIMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLL 395

                 ....*
gi 110432575 437 MSMHI 441
Cdd:MTH00150 396 LLLHW 400
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
1-441 5.14e-115

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 344.83  E-value: 5.14e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575   1 MLKIIVPTAMLLPVIWYSTNpmtWMNITLHSLTISLMSLFLFSQaDTNSNNFSPTFFSDPLSSPLLVLTMWLLPLTVVAS 80
Cdd:MTH00163   1 MLKFLFMLLFLIPLCFLKNS---WWLVQSLLFLLSFLFMLLFSL-SFYFSNISYFFGLDLLSFGLILLSFWICMLMILSS 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  81 QYHLTKEPWerKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPL 160
Cdd:MTH00163  77 ESVYKKNNY--SNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPL 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 161 LVALSYIQSSMGTLNLFMMTYwlqelpNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGG 240
Cdd:MTH00163 155 LVGIFYLYNNSGSLSFFLLNF------FGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGG 228
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 241 YGMMRITMILNPLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSLMGATTLMIAHG 320
Cdd:MTH00163 229 YGLLRVMSFFSKLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHG 308
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 321 LTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGLNM 400
Cdd:MTH00163 309 LCSSGLFCLANIIYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLS 388
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|.
gi 110432575 401 LVTATYSLYMLTTTQRGKSPYHMQNFSPSLTRENTLMSMHI 441
Cdd:MTH00163 389 FFSAAYSLYLYSYSQHGKYYSGLYSCSSGKVREYLLLFLHW 429
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
22-455 1.98e-104

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 318.08  E-value: 1.98e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  22 MTWMNITLHSLTISLMSLFLFSQADTNSNNFSPTFFSDPLSSPLLVLTMWLLPLTVVASQYHLTKEpwERKKHFLSTLIS 101
Cdd:MTH00205  19 KDWSFFSNLLLIGLFFSSFFFSNSFLMTSFISSSFSFDSLSLPLIMLSFWISLLMVLASYKVFKSN--KNSKLFTVSVIM 96
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 102 LQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTY 181
Cdd:MTH00205  97 LLLILILSFSVDNLLLFYITFEASLIPTLILILGWGYQPERLQASMYMMMYTLCASLPLLIGLFFLNSLNFSLSMFFNFP 176
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 182 WLQelpNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKSMAYPF 261
Cdd:MTH00205 177 LNF---SDFYLFLYWIFLMLAFLVKLPMYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLIRITSMLYKLNSNFSELF 253
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 262 LMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRT 341
Cdd:MTH00205 254 FSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSSGMFALANVNYERTNSRS 333
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 342 MLLARGLQALLPLMSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGLNMLVTATYSLYMLTTTQRGKSPY 421
Cdd:MTH00205 334 MLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISFLSGAYSLYLYSQSQHGKVSS 413
                        410       420       430
                 ....*....|....*....|....*....|....
gi 110432575 422 HMQNFSPSLTRENTLMSMHILPLLLLTLNPKILM 455
Cdd:MTH00205 414 QISSFLAISEREYYILILHWFPLNILILKLKIFI 447
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
1-454 7.80e-102

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 311.29  E-value: 7.80e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575   1 MLKIIVPTAMLLPvIWYSTNPMTWMNITLHSLTISLMSLFLFSQADTNSNNFSPTFFSDPLSSPLLVLTMWLLPLTVVAS 80
Cdd:MTH00014   1 MLKLIMPLISLLL-LPLIKYPWSWALTFSTLLLLSLFTLLNLYPMSAPYSMFTESLSSDMLSAPLITLTLWITALMILAS 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  81 Q--YHLTKEPwerkKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSL 158
Cdd:MTH00014  80 FkiFQNNKAP----KTFMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASL 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 159 PLLVALSYIQSSMGTLNLFMMTYWLqelPNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKL 238
Cdd:MTH00014 156 PLLMSILLIFYTNNSLSMLMSSMEP---PSIYLMNLWWLITILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKL 232
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 239 GGYGMMRITMILNPLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSLMGATTLMIA 318
Cdd:MTH00014 233 GGYGLLRMSSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIA 312
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 319 HGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGL 398
Cdd:MTH00014 313 HGLCSSALFALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLAI 392
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 110432575 399 NMLVTATYSLYMLTTTQRGKSPYHMQNFSPSLTRENTLMSMHILPLLLLTLNPKIL 454
Cdd:MTH00014 393 TSFLAAAYSLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILKPDLI 448
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
59-411 5.45e-74

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 240.37  E-value: 5.45e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  59 DPLSSPLLVLTMWLLPLTVVASqyhlTKEPWERKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGN 138
Cdd:COG1008   81 DGISLPLVLLTALLTPLAILAS----WNEIKKRPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLIGIWGG 156
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 139 QtERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPNSWSnYLLWTACIMAFMIKMPLYGLHMWLPK 218
Cdd:COG1008  157 E-RRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAELAAAPLPLTAQ-LLLFLAFFIAFAVKVPMFPFHTWLPD 234
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 219 AHVEAPIAGSMILAAILLKLGGYGMMRITMILNPL-TKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALV 297
Cdd:COG1008  235 AHVEAPTAGSVLLAGVLLKMGGYGLLRFALPLFPEaSAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 298 IMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLIG 377
Cdd:COG1008  315 LLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVG 394
                        330       340       350
                 ....*....|....*....|....*....|....
gi 110432575 378 ELLVTMAAFSWSNTTIILTGLNMLVTATYSLYML 411
Cdd:COG1008  395 EFLVLLGAFQVNPWLAILAALGLILTAAYLLWMY 428
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
52-410 2.31e-70

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 230.71  E-value: 2.31e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  52 FSPTFFS-DPLSSPLLVLTMWLLPLTVVASqyhltkepWERK----KHFLSTLISLQLLLVMTFATTELIMFYILFESTL 126
Cdd:MTH00217  71 FGPVVFAvDGISIFFLILTALLTPICILIS--------WNSIkfliKEFLLCLLVIEILLMGVFTILDLVGFYILFEGIL 142
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 127 IPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNlfMMTYWLQELPNSWsNYLLWTACIMAFMIK 206
Cdd:MTH00217 143 IPMFLIIGIWGSREEKVQASYYFFFYTFIGSVFMLLGIFTLYSYAGTTD--YQALCCLKIEKEL-QYFIFLGFFLSLAIK 219
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 207 MPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKSMAYPFLM-LCLWGMIMTSLICLRQTDLKSL 285
Cdd:MTH00217 220 IPKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFSWPLLPEASEYFSPLIQtLSLLAIIYGSLTTCRQVDLKRI 299
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 286 IAYSSVSHMALVIMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLS 365
Cdd:MTH00217 300 IAYSSVAHMGLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILMLLLVLA 379
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 110432575 366 NLALPPSINLIGELLVTMAAFSWSNTTIILTGLNMLVTATYSLYM 410
Cdd:MTH00217 380 NASIPLSCNFVGEFLSLLAAFEYSYIVGVLASLGMVLSAGYSIYL 424
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
59-459 4.96e-70

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 229.83  E-value: 4.96e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575   59 DPLSSPLLVLTMWLLPLTVVASQYHLTKepweRKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGN 138
Cdd:TIGR01972  76 DGISLLLVLLTALLTLLAILASWESIQK----RVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGG 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  139 QTeRLNAGLYFLFYTLTGSLPLLVALSYIQSSMGtlNLFMMTYWLQELPNSWSNYLLWTACIMAFMIKMPLYGLHMWLPK 218
Cdd:TIGR01972 152 PN-RIYAAMKFFLYTLAGSLLMLLAILGLYFLGG--GTFDLLELLNLPLPFGVQTWLFLAFFIAFAVKVPLFPLHTWLPD 228
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  219 AHVEAPIAGSMILAAILLKLGGYGMMRITMILNP-LTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALV 297
Cdd:TIGR01972 229 AHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFV 308
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  298 IMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLIG 377
Cdd:TIGR01972 309 LLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVG 388
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  378 ELLVTMAAFSWSNTTIILTGLNMLVTATYSLYMLTTTQRG-KSPYHMQNFSPSLTRENTLMSMHILPLLLLTLNPKILMG 456
Cdd:TIGR01972 389 EFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLYKRVFFGeLSNPEVAEFPDLNGREIAVLAPLVVLILFLGLYPNPLLD 468

                  ...
gi 110432575  457 PTY 459
Cdd:TIGR01972 469 LTE 471
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
59-410 1.76e-69

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 228.93  E-value: 1.76e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  59 DPLSSPLLVLTMWLLPLTVVASqyhlTKEPWERKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGn 138
Cdd:PRK05846  81 DGISLLLVVLTALLTPLAVLAS----WEEIKKRVKFYMAALLWLEGGVIGVFAALDLLLFYVFFEAMLIPMYFLIGVWG- 155
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 139 QTERLNAGLYFLFYTLTGSLPLLVALSYI----QSSMGTLNLfmmTYWLQ-ELPNSWSnYLLWTACIMAFMIKMPLYGLH 213
Cdd:PRK05846 156 GKNRIYAATKFFLYTLLGSLLMLVAIIYLvvvyYNATGTFDI---ADLLNlPLPPGVQ-YWLFLAFFIAFAVKMPMFPLH 231
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 214 MWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKSMAYPFLM-LCLWGMIMTSLICLRQTDLKSLIAYSSVS 292
Cdd:PRK05846 232 TWLPDAHVQAPTAGSVLLAGILLKMGAYGLLRFSLPLFPDASHEFAPIIItLGVIAIIYGALVALAQTDIKKLIAYSSIS 311
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 293 HMALVIMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPS 372
Cdd:PRK05846 312 HMGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGT 391
                        330       340       350
                 ....*....|....*....|....*....|....*...
gi 110432575 373 INLIGELLVTMAAFSWSNTTIILTGLNMLVTATYSLYM 410
Cdd:PRK05846 392 SGFVGEFLILLGSFQVNPVIAFIATTGLILAAVYSLWL 429
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
51-410 2.68e-68

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 225.71  E-value: 2.68e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  51 NFSPTFFS-DPLSSPLLVLTMWLLPLTVVASQ---YHLTKEpwerkkhFLSTLISLQLLLVMTFATTELIMFYILFESTL 126
Cdd:MTH00204  73 QWGPLVFAvDGVSLFFILLTTLLIPICILISWksiKFLFKE-------FLLCLLFLEVLLIGVFSVLDLLLFYILFEGIL 145
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 127 IPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTywLQELPNSWSNYLLwTACIMAFMIK 206
Cdd:MTH00204 146 IPMFLLIGIWGSREEKVRASYYFFFYTFAGSVFMLLGIFQLYSITGTTDYQILL--NIKLPLSIQKWLL-VGFFLSLAVK 222
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 207 MPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKSMAYPF-LMLCLWGMIMTSLICLRQTDLKSL 285
Cdd:MTH00204 223 IPQIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGFLRFSWPLFPAASEYFAPLiVMLSVIAVIYGSLTTCRQVDFKRL 302
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 286 IAYSSVSHMALVIMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLS 365
Cdd:MTH00204 303 IAYSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIMLVLSLA 382
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 110432575 366 NLALPPSINLIGELLVTMAAFSWSNTTIILTGLNMLVTATYSLYM 410
Cdd:MTH00204 383 NMGFPLSCNFVGEFFSLLAAFEYSLGLGVLVTSGMVWSAAYSLYL 427
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
113-398 3.56e-66

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 214.10  E-value: 3.56e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  113 TELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPNSWSN 192
Cdd:pfam00361   2 NDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNSSGL 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  193 YLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKSMAYPFLMLCLWGMIMT 272
Cdd:pfam00361  82 LLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLG 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  273 SLICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANS-NYERVHSRTMLLARGLQAL 351
Cdd:pfam00361 162 SLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSvIYRRVHTRNIRDYGGLAKT 241
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 110432575  352 LPLMSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGL 398
Cdd:pfam00361 242 MPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGV 288
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
56-409 3.87e-58

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 199.38  E-value: 3.87e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  56 FFSDPLSSPLLVLTMWLLPLTVVASqYHLTKEpweRKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITR 135
Cdd:MTH00226  98 FAVDGISIYFIILTGFIVPCSILIS-WHSVKY---LTKSFLICMLILEFLLYAVFSVLDIFMFYILFEGVLIPMYLILGI 173
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 136 WGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPNSWSNYLlWTACIMAFMIKMPLYGLHMW 215
Cdd:MTH00226 174 WGSREEKMQAAYYFFFYTLIGSVLMLLCLFSLYNIHGTTDYLTLASCSHVVSEQTQKWI-FLGIFLAMAVKIPIFPFHIW 252
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 216 LPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPL-TKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHM 294
Cdd:MTH00226 253 LPKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLgAQNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHM 332
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 295 ALVIMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSIN 374
Cdd:MTH00226 333 GLVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGN 412
                        330       340       350
                 ....*....|....*....|....*....|....*
gi 110432575 375 LIGELLVTMAAFSWSNTTIILTGLNMLVTATYSLY 409
Cdd:MTH00226 413 FIGEYLSILSSFNWNPIIGVFVCSGVILSAVYSFY 447
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
102-441 3.08e-46

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 165.08  E-value: 3.08e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 102 LQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALSYiqssmgtlNLFMMTY 181
Cdd:MTH00094  71 LILICLLFFVSSNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLFVYLK--------NFFFFSL 142
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 182 WLQELPNSWSNYLLwtaCIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRitmILNPLTKSMAYPF 261
Cdd:MTH00094 143 CYFDFFLSWEMFFI---LSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLR---ILGSLNFVYNNFW 216
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 262 LMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRT 341
Cdd:MTH00094 217 IIFSLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRL 296
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 342 MLLARGLQALLPLMSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGLNMLVTATYSLYMLTTTQRGKSPY 421
Cdd:MTH00094 297 IYFMNSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIVSSFMGKKFS 376
                        330       340
                 ....*....|....*....|
gi 110432575 422 HMQNFSPSLTRENTLMSMHI 441
Cdd:MTH00094 377 NFNNFNVGLSLPLVFMMFNM 396
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
1-387 1.33e-43

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 158.39  E-value: 1.33e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575   1 MLKIIVP--TAMLLPVIWYSTNPMTWMNItLHSLTISLMSLFLFSQADTN----------SNNFSPTFFSDPLSSPLLVL 68
Cdd:COG0651    6 ILPVLLPllAAALLLLLGRRRRLQRALSL-LASLALLALALALLLQVLAGgplvyalggwPAPFGIVLVADRLSALFLLL 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  69 TMWLLPLTVVASQYHLTkepWERKKHFLSTLISLQLL-LVMTFATTELIMFYILFESTLIPTLVIITRWGNQtERLNAGL 147
Cdd:COG0651   85 TALVALAVLLYSIGYMR---HERRGRRFYPLFLLLLAgMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTK-EALRAGL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 148 YFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPNSWSnYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAG 227
Cdd:COG0651  161 KYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLAELDPGLL-LAAFALLLVGFGIKAALFPLHFWLPDAYPAAPSPV 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 228 SMILAAILLKLGGYGMMRI-TMILNPLTKSMAYPFLMLC-LWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIMAILIQT 305
Cdd:COG0651  240 SALLSGLLTKVGVYAILRVlTLLFGADPALFLGTLLLVLgLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGT 319
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 306 PWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLIGELLVTMAA 385
Cdd:COG0651  320 PLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAA 399

                 ..
gi 110432575 386 FS 387
Cdd:COG0651  400 LE 401
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
59-411 2.16e-40

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 151.34  E-value: 2.16e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  59 DPLSSPLLVLTMWLLPLTVVASqYHLTKEPweRKKHFLS-TLISLQLLLvmtFATTELIMFYILFESTLIPTLVIITRWG 137
Cdd:PRK12561  58 DGLSMPLVLLSGLITTLSIFAS-WKVTRKP--RLFYFLMlVLYSAQIGV---FLAQDLLLFFLMWELELVPVYLLISIWG 131
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 138 NQtERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPNSWSnYLLWTACIMAFMIKMPLYGLHMWLP 217
Cdd:PRK12561 132 GQ-KRLYAATKFILYTALASIFILVAGLALALSGDTFTFDLAELGAKSYPLALE-LLLYAGFLIAFGVKLPIFPLHTWLP 209
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 218 KAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKSMAYPFLM-LCLWGMIMTSLICLRQTDLKSLIAYSSVSHMAL 296
Cdd:PRK12561 210 DAHGEASAPVSMILAGVLLKMGGYALIRFNVQMLPDAHVYFAPALAiLGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGF 289
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 297 VIMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLI 376
Cdd:PRK12561 290 VLLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMPKTFALFTASSMASLALPGMSGFV 369
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 110432575 377 GELLV-----TMAAFSWS--NTTIILTGLNMLVTATYSLYML 411
Cdd:PRK12561 370 SELTVflgitSSDVYSSTfrTITILLAAVGLILTPIYLLSML 411
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
59-430 3.69e-36

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 139.45  E-value: 3.69e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  59 DPLSSPLLVLTMWLLPLTVVASQYHLtkepwERKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGN 138
Cdd:PRK06473  78 DGLSLPLLVLNSLLTLIAIYSSDESI-----QRPRFYYSLLLLLNAGVSGAFLAQDLLLFFLFYELELIPLYLLIAIWGG 152
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 139 QtERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPNSwSNYLLWTACIMAFMIKMPLYGLHMWLPK 218
Cdd:PRK06473 153 Q-RRGYAATKFLLYTAISGILILVSFLGLVWLSGASSFDYEPLRSHTLPLS-TQLLLLAPILVGFGIKIPLVPFHTWLPD 230
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 219 AHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKSMAYPFL-MLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALV 297
Cdd:PRK06473 231 AHVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPWLaTWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 298 IMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGL---QALLPLMSTWWLLASLSNLALPPSIN 374
Cdd:PRK06473 311 LLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLlnpERGLPITGSLMILGVMASAGIPGMVG 390
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 110432575 375 LIGELLVTMAAFSWSNTTIILTGLNMLVTATYSLYMLTTTQRGKSPYHMQNFSPSL 430
Cdd:PRK06473 391 FIAEFLVFRGSFPIFPVQTLLCMIGTGLTAVYFLLLVNRVFFGRLTAELSNLPRVL 446
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
58-411 2.28e-34

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 134.83  E-value: 2.28e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  58 SDPLSSPLLVLTMWLLPLTVVASqYHLTKEPwerkKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWG 137
Cdd:PRK02546  85 ADGLSMPLILLTGFITTLAVLAA-WPVTFKP----KLFYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWG 159
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 138 NQtERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPNSWSNyLLWTACIMAFMIKMPLYGLHMWLP 217
Cdd:PRK02546 160 GK-KRQYAATKFILYTAGSSLFILLAALAMAFYGDTPTFDMTALAAKDFGLGFQL-LCYAGLLIAYGVKLPIVPLHTWLP 237
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 218 KAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKSMAYPFL-MLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMAL 296
Cdd:PRK02546 238 DAHGEATAPVHMLLAGILLKMGGYALLRMNAGMLPDAHAQFAPLLiVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGF 317
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 297 VIMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLI 376
Cdd:PRK02546 318 VLIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAMWTACSLASLALPGMSGFV 397
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 110432575 377 GELLV-----TMAAFSWSNTTII--LTGLNMLVTATYSLYML 411
Cdd:PRK02546 398 AELMVfvgfaTSDAYTLPFRVVVvfLAAVGVILTPIYLLSML 439
ndhD CHL00011
NADH dehydrogenase subunit 4
59-411 1.22e-33

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 132.38  E-value: 1.22e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  59 DPLSSPLLVLTMWLLPLTVVASqYHLTKEPweRKKHFLstlislqlLLVM------TFATTELIMFYILFESTLIPTLVI 132
Cdd:CHL00011  83 DGLSIGPILLTGFITTLATLAA-WPVTRNS--RLFYFL--------MLAMysgqigLFSSRDLLLFFIMWELELIPVYLL 151
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 133 ITRWGNQtERLNAGLYFLFYTLTGSLPLLVA---LSYIQSSMGTLNLFMMTYwlQELPNSWSnYLLWTACIMAFMIKMPL 209
Cdd:CHL00011 152 LSMWGGK-KRLYSATKFILYTAGGSIFLLIGvlgMGLYGSNEPTLNFETLAN--QSYPVALE-ILFYIGFLIAYAVKLPI 227
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 210 YGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKSMAYPFLMLC-LWGMIMTSLICLRQTDLKSLIAY 288
Cdd:CHL00011 228 IPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLVIVgAIQIIYAASTSLGQRNLKKRIAY 307
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 289 SSVSHMALVIMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVhsRTMLLAR--GLQALLPLMSTWWLLASLSN 366
Cdd:CHL00011 308 SSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRI--RLVYLDEmgGIAIPMPKIFTMFSSFSMAS 385
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|..
gi 110432575 367 LALPPSINLIGELLV-----TMAAFSWSNTTII--LTGLNMLVTATYSLYML 411
Cdd:CHL00011 386 LALPGMSGFVAELIVffgiiTSQKYLLMPKILItfVMAIGMILTPIYLLSML 437
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
59-435 1.50e-31

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 126.37  E-value: 1.50e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  59 DPLSSPLLVLTMWLLPLTVVASQYHLtkepwERKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGN 138
Cdd:PRK07363  78 DGLSLPLLVLNSLLTWIAIYSIGENT-----ERPRLYYSLILLINGGIAGALLAQNLLLFFLFYELELIPFYLLIAIWGG 152
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 139 QtERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPNSwSNYLLWTACIMAFMIKMPLYGLHMWLPK 218
Cdd:PRK07363 153 E-KRGYASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSFDYDAISTQNLSLN-TQLILLTGLLLGFGIKIPLVPLHTWLPD 230
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 219 AHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKSMAYPflMLCLWGMIMT---SLICLRQTDLKSLIAYSSVSHMA 295
Cdd:PRK07363 231 AYTEASPAVAILLGGVLAKLGTYGLLRFGLQLFPQTWSLVAP--GLAIIGTISViygALSAIAQKDIKRMVAYSSIGHMG 308
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 296 LVIMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQAL---LPLMSTWWLLASLSNLALPPS 372
Cdd:PRK07363 309 YILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGLMNPirgLPLTSALLVLAGMASAGIPGL 388
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 110432575 373 INLIGELLVTMAAFSWSNTTIILTGLNMLVTATYSLYMLTTTQRGKSPYHMQNFSPSLTRENT 435
Cdd:PRK07363 389 VGFVAEFIVFQGSFSTFPIPTLLCIVASGLTAVYFVILLNRTCFGRLDNKLAYYPKVLWSEKI 451
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
55-406 8.15e-26

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 109.58  E-value: 8.15e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  55 TFFSDPLSSPLLVLTMWLLPLTVVASQyhLTKEPWERKKHFLsTLISLQLLLVMTFaTTELIMFYILFESTLIPTLVIIT 134
Cdd:PRK08375  72 ELRADSLSALFLLVTSILAIAALLYAI--GYGEHRQTRFYAL-FLLLLAGLLGALL-TADLFNLFVFLEIMSLSSYALVA 147
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 135 RWGNQtERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPnswsnyLLWTA---CIMAFMIKMPLYG 211
Cdd:PRK08375 148 MGGDR-RALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGALAENP------TVVTAfgfVLLALALKAAVFP 220
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 212 LHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITM----ILNPLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIA 287
Cdd:PRK08375 221 LHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYFtvfgGDFRFALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLA 300
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 288 YSSVSHMALVIMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNL 367
Cdd:PRK08375 301 YSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLGRRMPLTAAAFAVASLSLI 380
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 110432575 368 ALPPSINLIGELLVTMAAFS---WSNTTIILTGlnMLVTATY 406
Cdd:PRK08375 381 GVPPTSGFVSKWYLVVGAVEagqWLVLAVLLAS--SLLALLY 420
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
59-408 8.53e-24

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 103.90  E-value: 8.53e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  59 DPLSSPLLVLTMWLLPLTVVASQYHLTKEpwERKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGN 138
Cdd:PRK12667  81 DLLGALLGLLTALVMFLILIYSYWYLEHE--SGPEWYYTLLLGLEAGMLGILLTGDAFNLFVMLEVLSISAYGLVAYYRD 158
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 139 QTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLN-----LFMMTYWLQELPNSWSNYLLWTACIMA-----FMIKMP 208
Cdd:PRK12667 159 RGDAVEAAIKYALIGAVGTTLYFLALAFLYATFGTLNmadlsAKIRGLSFPLTGGLAGNPPLALGVALAlalwaFTIKAA 238
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 209 LYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRI-------TMILNPLTKSMAYPFLMLCLWGMIMTSLICLRQTD 281
Cdd:PRK12667 239 IFPNHFWLPDAHPAAPSPVSAMLSGLVVNVGAYAIIRFlytifgiSPSLIDFRAALSPILIILGAVSAIIGALMMVVQKD 318
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 282 LKSLIAYSSVSHMALVIMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLL 361
Cdd:PRK12667 319 VKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFLI 398
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*..
gi 110432575 362 ASLSNLALPPSINLIGELLVTMAAFSWSnttIILTGLNMLVTATYSL 408
Cdd:PRK12667 399 GALSLVGIPPLNGFFSKLLLFNALLESG---FYLPALVLLIASAISL 442
Oxidored_q5_N pfam01059
NADH-ubiquinone oxidoreductase chain 4, amino terminus;
1-109 6.09e-20

NADH-ubiquinone oxidoreductase chain 4, amino terminus;


Pssm-ID: 366442 [Multi-domain]  Cd Length: 110  Bit Score: 84.88  E-value: 6.09e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575    1 MLKIIVPTAMLLPVIWYSTNPMTWMNITLHSLTISLMSLFLFSQADTNS-NNFSPTFFSDPLSSPLLVLTMWLLPLTVVA 79
Cdd:pfam01059   1 MLKILLPTLMLIPLTFLSKPKWLWTTSTLYSLLLALLSLLLLNNPSNFSwSNLSYFLGIDSLSYPLIILSCWLLPLMILA 80
                          90       100       110
                  ....*....|....*....|....*....|
gi 110432575   80 SQYHLTKEPWERKKHFLSTLISLQLLLVMT 109
Cdd:pfam01059  81 SQKHLKSEPNNRQRTFIFLLILLQLFLILT 110
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
96-327 4.20e-17

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 83.48  E-value: 4.20e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  96 LSTLISLQLLLVM----TFATTELIMFYILFESTLIPTLVIITRwGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSM 171
Cdd:PRK12665 110 VSIFLPTYLILVAgvsnAFLAGDLFNLYVGFEILLVASYVLLTL-GATAARVRAGVTYVMVSMVSSLLFLIGIALVYAAT 188
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 172 GTLNLFMMTYWLQELPnSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILN 251
Cdd:PRK12665 189 GTLNMADLAVRLDELP-SGTRTALFAVLLVAFGIKAAVFPLSFWLPDSYPTAPAPVTAVFAGLLTKVGVYAIIRTHTLLF 267
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 110432575 252 PlTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSLMGATTLMIAHGLTSSVLF 327
Cdd:PRK12665 268 P-GGGLDTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLF 342
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
206-398 1.88e-16

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 81.51  E-value: 1.88e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 206 KMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKSMAYPFLMLC--LWGMIMTSLICLRQTDLK 283
Cdd:PRK06458 227 KVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRYYILIDAAIGSDFPGRLLLIfgLLSVLVAAFFLLRQRDIK 306
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 284 SLIAYSSVSHMALVIMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLAS 363
Cdd:PRK06458 307 RLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPLTGWGLMLGA 386
                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 110432575 364 LSNLALPPSINLIGELLVTMAAFS---WSNTTIILTGL 398
Cdd:PRK06458 387 LAIAGMPPFGVFISEFLILTAGLArgpLLIAILLLLLL 424
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
107-344 4.06e-16

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 79.97  E-value: 4.06e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 107 VMTFATTELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQEl 186
Cdd:MTH00062  85 ILCFCVNNSLLFWFFYELSIIPLLYLLFSESPYSERYLASWYFLGYLLLTSLPLLLCLLYLSLVNGSFNFSDWGSDDSV- 163
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 187 pNSWSNYLLWtaciMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTksmAYPFLMLCL 266
Cdd:MTH00062 164 -SLIVYYVLS----FMFITKVPLFPFHTWLPIVHAEASSPVSIFLSGYIMKLGLLGVYRFCGFIFSGS---FLGYLFLCC 235
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 110432575 267 WGMIMTSLICLRQTDLKSLIAYSSVSHMaLVIMAILIQTPWSLMGATTLM-IAHGLTSSVLFCLANSNYERVHSRTMLL 344
Cdd:MTH00062 236 LFSVFFLITACSELDGKRWLAFLSLSHI-LVPVLGLFVGDWSSINLSFFYcLGHGLSAGLVFLLLWCFYEVSGSRNWVL 313
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
104-327 9.19e-16

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 79.41  E-value: 9.19e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 104 LLLVMTFA--TTELIMFYILFE-STLIPTLVIITRwgNQTERLNAGLYFLFYTLTG------SLPLLVALSYIQSSMGTL 174
Cdd:PRK08676 111 LLSVITFAffSDNLALFWIFAElTTVFSAMLIAIL--SARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTL 188
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 175 NLFMMTYWLQELPNSWSnYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPlT 254
Cdd:PRK08676 189 NWTELAAHASLLSPSVL-GASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQ-S 266
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 110432575 255 KSMAYPFLMLCLWGMIMTSLIC---LRQTDLKSLIAYSSVSHMALVIMAILIQTPWSLMGATTLMIAHGLTSSVLF 327
Cdd:PRK08676 267 GAAEQFSNVLIGLGIFSIAVAAfsmLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLF 342
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
52-408 1.04e-15

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 79.39  E-value: 1.04e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  52 FSPTFFSDPLSSPLLVLTMWLLPLTVVASQYHLTKEPWERKKHFLSTLISLQLL-LVMTFATTELIMFYILFESTLIPTL 130
Cdd:PRK08667  69 LDITFHIDRLAAFFIILIGLVSLCVAIYSLGYNEHMSSNERANLLSALTALFILsMLGVVASANTFSFLFFWEIMALSSF 148
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 131 VIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPnswsnyLLWTACIMAFMIKMPLY 210
Cdd:PRK08667 149 FLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAGILS------LVFLLLFLGFGIKAGII 222
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 211 GLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRItmILNPLTKSMAYPFLMLCLwGMIMTSL---ICLRQTDLKSLIA 287
Cdd:PRK08667 223 PFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRF--LMDVLSPELWWGVLILLA-GSISALLgviYALKEHDLKGLLA 299
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 288 YSSVSHMALVIMAILIQTPWSLMGATTLM-----------IAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMS 356
Cdd:PRK08667 300 YSSIENIGIILMGIGLYVIFGVYGLDTLAllalggalfhsLNHALFKSLLFLTAGSVVHATGTRNIEKMGGLVKLMPYTS 379
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|...
gi 110432575 357 TWWLLASLSNLALPPSINLIGELLVTMAAF-SWSNTTIILTGLNMLVTATYSL 408
Cdd:PRK08667 380 ALFLVGAVSIAALPPFNGFASELLLYESFFqSFSVADPLIKILLFSVLAIFAL 432
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
110-327 6.97e-13

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 70.80  E-value: 6.97e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 110 FATTELIMFYILFESTLIPTLVIITrWGNQTERLNAGLYFLFYTLtGSLPLLVALSYIQSSMGTLNLFMMtywLQELPNS 189
Cdd:PRK08668 115 FLANDLLTLYIFWEIMTFSSFMMVP-MGKKESRKASLKYFVLSAI-GAYAMLYAIFLIYAKTGTFDFADI---SQGLIND 189
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 190 WSNYLLWTAC--IMAFMI-KMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMrITMILNPLTK----------- 255
Cdd:PRK08668 190 TSTGFALIVFlfLLAFGVaKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSKLGAYGFL-LVLYVLPGTKlfsefgtyrgv 268
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 110432575 256 -SMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSLMGATTLMIAHGLTSSVLF 327
Cdd:PRK08668 269 pLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFF 341
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
52-330 8.81e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 69.98  E-value: 8.81e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  52 FSPTFFSDPLSSPLLVLTMWLLPLTVVASQYHLTKEpweRKKHFLSTLISLQLLLVM-TFATTELIMFYILFESTLIPTL 130
Cdd:PRK07691  69 FGIVFVADMFAALLVLTSSIITFLVILYSFQTIGIE---RERYYYYPSVLFMLAGVNgAFLTGDIFNLFVFFEVMLMASY 145
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 131 VIITRWGNQTErLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPNSWSNYLLWTAC--IMAFMIKMP 208
Cdd:PRK07691 146 VLIVIGGTKIQ-LRESIKYVLINVVSSAFFVVAVAILYSVVGTLNMADISVKIAELSAGQTGLITVVAIlfLFVFATKAG 224
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 209 LYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRI-TMILNPLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIA 287
Cdd:PRK07691 225 LFPLYFWLPGSYYAPPIAIAALFGALLTKVGVYAIARTfTLFFSHDTSFTHYLILILALLTIIFGVIGAVAYFDIKKIII 304
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 110432575 288 YSSVSHMALVIMAILIQTPWSLMGATTLMIAHGLTSSVLFCLA 330
Cdd:PRK07691 305 YNIMIAVGVILVGVAMMTESGMIGAIYYLIHDMIVKAALFLLI 347
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
10-327 1.31e-12

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 69.37  E-value: 1.31e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  10 MLLPVIWYSTNPMTWMNITLHSLTISLMSLFLFSQADTNSNnFSPTFFSDPLSSPLLVLTMWLLPLTVVASQYHLTKEPW 89
Cdd:COG1007   21 LLLDLFLPRRSRRLLAGLALLGLLLALALLLLALGGGTGTA-FGGMFVVDGFALFFKLLILLAALLVLLLSRDYLERRGL 99
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  90 ERKKHFLSTLISLQLLLVMTFATtELIMFYILFESTLIPTLVIITRWGNQTERLNAGL-YFLFYTLTGSLpLLVALSYIQ 168
Cdd:COG1007  100 LRGEFYALLLFATLGMMLMASAN-DLLTLFLGLELLSLSLYVLVAFRRDDRRSSEAALkYFLLGALSSGF-LLYGISLLY 177
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 169 SSMGTLNLFMMTYWLQELPNSwsNYLLWTACIM---AFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILlKLGGYGM-M 244
Cdd:COG1007  178 GATGSLNLAGIAAALAAGGAN--SPLLLLGLVLvlaGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAP-KIAAFAAlL 254
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 245 RITMI-LNPLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSLMGATTLMIAHGLTS 323
Cdd:COG1007  255 RLLVEaFPGLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAYLFMN 334

                 ....
gi 110432575 324 SVLF 327
Cdd:COG1007  335 LGAF 338
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
59-332 2.81e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 68.61  E-value: 2.81e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  59 DPLSSPLLVLTMWLLPLTVVASQYHLTKEPWERKkhfLSTLISLQLL----LVMTFATTELIMFYILFESTLIPTLVIIT 134
Cdd:PRK12662  75 DILSATMLVLVNFIAVMSVLYGIYPNRKEISVNK---IPSFYSAFLLclggLLGILVSNDVFNIYVFLEISSISSYVLVA 151
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 135 RwGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPNSWSNYLLWTACIMAFMIKMPLYGLHM 214
Cdd:PRK12662 152 M-GRDKKALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLNMGDMFLIIQDLPTNRAIQIGVLFIMVGLFIKAALFPFHK 230
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 215 WLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMI-----LNPLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYS 289
Cdd:PRK12662 231 WLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVYDvfkanFVFTTLPFNNVFMILAALAIVFGSVLAILSKDIKRIFAYS 310
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 110432575 290 SVSHMALVIMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANS 332
Cdd:PRK12662 311 SISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGS 353
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
52-312 3.84e-12

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 68.05  E-value: 3.84e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  52 FSPTFFSDPLSSpLLVLTMWLLPLtvVASQYHLTKEPWERKKHFLSTLISLQLLLVM-TFATTELIMFYILFESTLIPTL 130
Cdd:PRK12663  69 FGIQFTGDSLSA-LMVTTASFVAT--AIMAYGFGDIEHSGRRYGFPPFILLLMAGVIgSFLTGDLFNLYVWFEVMLIASF 145
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 131 VIITrWGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPNSWSNYLLWTACIMAFMIKMPLY 210
Cdd:PRK12663 146 VLIT-LGQEREQLRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLNMAHIAMRLNDMGDTATLTTIALLFLLAFGMKAALF 224
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 211 gLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKSMAYPFL--MLCLwGMIMTSLICLRQTDLKSLIAY 288
Cdd:PRK12663 225 -PFMWLPAAYHTPNTEVAALFAALLTKVGIYALIRVFTLLFPQERELLHPLLatMAAI-TMVIGALGALAYKDIRRIAGY 302
                        250       260
                 ....*....|....*....|....
gi 110432575 289 SSVSHMALVIMAILIQTPWSLMGA 312
Cdd:PRK12663 303 QVISSIGFILLGLALGTPAGINGA 326
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
102-327 4.60e-12

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 67.87  E-value: 4.60e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 102 LQLLLVM----TFATTELIMFYILFESTLIpTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLF 177
Cdd:PRK08377 113 LFLLLMLgatgMIATGDIFNLFVFMEITAI-TAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGTLNMA 191
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 178 MMTYWLQELpNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLT--K 255
Cdd:PRK08377 192 HIAQLAGTI-DPTVAQVGLALLIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLMQNANgwS 270
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 110432575 256 SMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSLMGATTLMIAHGLTSSVLF 327
Cdd:PRK08377 271 SVLKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLF 342
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
115-404 1.58e-11

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 66.48  E-value: 1.58e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 115 LIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMtYWLQELPNSWSNYL 194
Cdd:PRK12647 117 LITLFVFWELTSITSFLLIGFNHEREAARRAALQALLVTGGGGLALLAGLILLGNVTGTYSLSEL-LASGDVIREHPLYL 195
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 195 LWTACIM--AFMiKMPLYGLHMWLPKAhVEAPIAGSMIL-AAILLKLGGYGMMRitmiLNPLTKSMAYPFLMLCLWG--- 268
Cdd:PRK12647 196 AILLLVLggAFT-KSAQFPFHFWLPNA-MEAPTPVSAYLhSATMVKAGIYLLAR----LNPVLGGTPLWQTILPLFGglt 269
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 269 MIMTSLICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGL 348
Cdd:PRK12647 270 MLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLVAHSLYKGALFMVAGIIDHETGTRDITKLGGL 349
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 349 QALLPLMSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGL----NMLVTA 404
Cdd:PRK12647 350 RRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALLEAPLWSLILTVAavlgNALMVA 409
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
113-402 2.35e-11

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 65.38  E-value: 2.35e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 113 TELIMFYILFESTLIPTLVIITRWGNQtERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMtywlQELPNSwSN 192
Cdd:PRK06525 133 STLLGLLLFFEITGLCSWALISYYQSP-KALRSALKALLITHIGSLGLYLAAATLFLQTGTFALSAL----SGLHGS-LK 206
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 193 YLLWTACIMAFMIKMPLYGLHMWLPKAhVEAPIAGSMIL-AAILLKLGGYGMMRITMILNPLTKSMAYPFLMLCLWGMIM 271
Cdd:PRK06525 207 YLVFLGILFAAWGKSAQLPFYSWLPDA-MEAPTPASAYLhAASMVKVGVYIFARAIQSMGPIPHVIGYVGAVMAIVTLLY 285
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 272 TSLICLRQTDLKSLIAYSSVSHMALVIMAILIQ---TPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGL 348
Cdd:PRK06525 286 GFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAilgSRLALEGSIAYIFNHAFAKSLFFLVAGALSYSCGTRLLPRLRGV 365
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 110432575 349 QALLPLMSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGLNMLV 402
Cdd:PRK06525 366 LKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIFAAGFELSVEYWILLPAMVLL 419
PRK12650 PRK12650
DUF4040 family protein;
104-330 2.75e-11

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 65.83  E-value: 2.75e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 104 LLLVMTfatTELIMFYILFESTLIPTLVIITRWGNQTErlNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYwl 183
Cdd:PRK12650 124 LLLVLA---DDVVVLFVAWELVSLASFFLIARSGSGGE--AGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILH-- 196
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 184 qelPNSWSNYLLWTACI-----MAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITmilnPLTKSMA 258
Cdd:PRK12650 197 ---SDVWAEKPGLTTVVavliaVAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFS----PVFHDVA 269
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 110432575 259 YPFLMLCLWGM---IMTSLICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSLMGATTLMIAHGLTSSVLFCLA 330
Cdd:PRK12650 270 VWNWLLIIVGMitaLMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLI 344
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
16-427 2.97e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 65.22  E-value: 2.97e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  16 WYSTNPMTWMNITLHSLTISLMSLFLFSQAD------TNSNNFSPTFFSDPLSSPLLVLTMWLLPLTVVASQYHLTKEPW 89
Cdd:PRK06589  33 DSFIRNFLLITISIFFFGNILLIDLLFLKGIraqfelMDFGNYSIGLHLEPLGLIFLLLIGFLWICALLYTPKYLAINNI 112
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  90 ERKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITrWGNQTERLNAGLYFL-FYTLTGSLPLLVALSYIQ 168
Cdd:PRK06589 113 DSSSRFLFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLIG-HTRNNISLSGGYKYLkILMISALLLFLPAVILIY 191
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 169 SSMGTLNLFMMTYWlqelpnSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITM 248
Cdd:PRK06589 192 TKTGNLDFVSGGLF------SKNQSIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALLHAVIVVKTGLFCIYKILL 265
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 249 ILNPLTK-----SMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSLMGATTLMIAHGLTS 323
Cdd:PRK06589 266 YIFGLSYlqrifAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLVSHSFAK 345
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 324 SVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSN--TTIILTGLNML 401
Cdd:PRK06589 346 ICLFYSMGSIYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQpwLSIIVMLVVIA 425
                        410       420
                 ....*....|....*....|....*.
gi 110432575 402 VTATYSLYMLTTTQRGKSPYHMQNFS 427
Cdd:PRK06589 426 SSILSALYLLKILSSIYKPSLSENSF 451
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
51-339 1.22e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 63.43  E-value: 1.22e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  51 NFSPTFFSDPLSSPLLVLTMWLlplTVVASQYhltkePWERKK--HFLSTLISLQLLLVMTFATTELIMFYILFESTLIP 128
Cdd:PRK07234  58 NFGVTLRADALSGYFILTNALV---TLAVIFY-----CWESAKtrFFYAQLLILHGSVNAAFVCADLISLYVALEVLSIA 129
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 129 TLVIITrWGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLfmmtywlQELPNSWSNYLlwTACIMAFMIKMP 208
Cdd:PRK07234 130 TFLLVA-YPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAF-------SGLATADPEAF--ALIALGLLVKGG 199
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 209 LYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKSMAYPFLMLCLWGmimtSLICLRQTDLKSLIAY 288
Cdd:PRK07234 200 IFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLDLIVRIFGVGTALLG----VLFALLEKDLKRMLAF 275
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 110432575 289 SSVSHMALVIMAILIqtpwslmgATTLMIAHGLTSSVLFCLANSNYERVHS 339
Cdd:PRK07234 276 STISQLGFILAAPLV--------GGLYALAHGLVKSTLFLCAGALPSRNFT 318
PRK12666 PRK12666
putative monovalent cation/H+ antiporter subunit D; Reviewed
59-330 1.72e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237166 [Multi-domain]  Cd Length: 528  Bit Score: 62.95  E-value: 1.72e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  59 DPLSSPLLVLTMWLLPLTVVASQYHltkepWERKKHFLSTLISLQLLLVM-TFATTELIMFYILFESTLIPT--LVIitr 135
Cdd:PRK12666  79 DRLSALMLLLTALLALAALLYALAG-----WDRAGPHFHALFQFQLMGLNgAFLTGDLFNLFVFFEVLLAASygLLL--- 150
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 136 WGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPNSwSNYLLWTACIM---AFMIKMPLYGL 212
Cdd:PRK12666 151 HGSGRARVRAGLHYVAINLVASSLFLIGVGLIYGVTGTLNMADLAQRIAQLPAA-DRALLEAGAALllvVFLIKAAMWPL 229
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 213 HMWLPKAHVEA--PIAGsmiLAAILLKLGGYGMMRI-TMILNPLTKSMAYPFLMLCLWGMIMTSLI----CLRQTDLKSL 285
Cdd:PRK12666 230 NFWLPPAYAAAsaPVAA---LFAIMTKVGIYAILRLsTLLFGPEAGASAGFGQDWLLPGGLATLAFgaigVLAAQRLRRL 306
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 110432575 286 IAYSSVSHMALVIMAILIQTPWSLMGATTLMIAHGLTSSVLFCLA 330
Cdd:PRK12666 307 AAYLVLVSSGTLLAAIGLGNPAATAAALYYLVHSTLAAAALFLLA 351
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
63-342 2.12e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 59.34  E-value: 2.12e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  63 SPLLVLTMWLLPLTVVASQYHLTKEPWERKKHFlsTLISLQLLLVMTFATT-ELIMFYILFESTLIPTLVIITRWGNQTE 141
Cdd:PRK08376  92 GAFMALIATIVSFLAVLYSISYMKHDTGLDKYY--TLILLLELGMLGMAITgDLFNFFVFLEIMSIASYALVAFRNDTWE 169
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 142 RLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPNSWSNYLLwTACIMAFMIKMPLYGLHMWLPKAHV 221
Cdd:PRK08376 170 AIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMAYLAVKMSENPTVVAKIAL-ALFIAGLAMKSGAVPVHMWLPDAYP 248
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 222 EAPIAGSMILAAIllKLGG-YGMMRITMILNPLTKSMA---YPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVS---HM 294
Cdd:PRK08376 249 AAPSSISAMLLVI--KQAGlYALARVLFSIYGPAINLAtvgWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSqigYM 326
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 110432575 295 AL---VIMAILIQTPWSLMGATTL------MIAHGLTSSVLFCLANSNYERVHSRTM 342
Cdd:PRK08376 327 LLglgVGLAALGDPAMASYGEIALaggiyhIVNHALYKALLFLTAGAVIYETGTRNL 383
PRK12646 PRK12646
DUF4040 family protein;
116-357 5.10e-09

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 58.61  E-value: 5.10e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 116 IMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMmtywLQELPNSWSNYLL 195
Cdd:PRK12646 133 ILMYVFWELTSVSSFLLISYWYNNGDSQFGAIQSFMITVFGGLALLVGFIMLYIMTGTNNITE----ILGQADHIKNHGL 208
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 196 WTACIMAFMI----KMPLYGLHMWLPKAhVEAPIAGSMIL-AAILLKLGGYGMMRITMILNpLTKSMAYPFLMLCLWGMI 270
Cdd:PRK12646 209 FIPMIFMFLLgaftKSAQFPFHIWLPRA-MAAPTPVSAYLhSATMVKAGIFLLFRFTPLLG-LSNMYIYIVTFVGLITML 286
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 271 MTSLICLRQTDLKSLIAYSSVSHMALVIMAI-----LIQTP---------WSLMGATTLMIAHGLTSSVLFCLANSNYER 336
Cdd:PRK12646 287 FGSITALKQWDLKGILAYSTISQLGMIMAMVgigggYAQHQqdaiasiyvFVLFAALFHLMNHAIFKCALFMGVGIIDHE 366
                        250       260
                 ....*....|....*....|.
gi 110432575 337 VHSRTMLLARGLQALLPLMST 357
Cdd:PRK12646 367 AGTRDIRILSGMRQLFPKMNL 387
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
212-342 1.82e-08

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 56.82  E-value: 1.82e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 212 LHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITM-ILNPLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSS 290
Cdd:PRK06521 229 LHVWLPRAHPAAPSHVSALMSGVMLKVAIYGILRVVFdLLGAPGWWWGVLVLALGAISAVLGVLYALAEHDLKRLLAYST 308
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 110432575 291 VSHMALVIMA-----ILIQTPWSLMGATTLMIA------HGLTSSVLFCLANSNYERVHSRTM 342
Cdd:PRK06521 309 IENIGIIFVGlglamVFIAYGMPLLAALALTAAlyhllnHALFKSLLFLGAGAVLHATGTRDM 371
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
156-398 5.21e-08

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 55.22  E-value: 5.21e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 156 GSLPLLVALSYIQSSMGTLNLFMMTYWLQELPnswSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAIL 235
Cdd:PRK08042 146 GTLLLAIACWLLWQRYGTLDLRLLDMRMQQLP---LGSDIWLLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTVV 222
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 236 LKLGGYGMMRITMILNPLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIM-------AILIQTP-- 306
Cdd:PRK08042 223 MKIGLLGILTLSLLGGNAPLWWGVALLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILLglgagvtGIALEQPal 302
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 307 --WSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLIGELLVTMA 384
Cdd:PRK08042 303 iaLGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQS 382
                        250
                 ....*....|....
gi 110432575 385 AFSWSNTTIILTGL 398
Cdd:PRK08042 383 FFKLSNSGAFVARL 396
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
1-323 6.61e-08

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 54.83  E-value: 6.61e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575   1 MLKIIVPTAMLLPVIWYSTNPMTWMNITLHSLTISLMSLFLFSQADTNSNNFSPTFFSDPLSSPLLVLTMWLLPLTVVAS 80
Cdd:PRK05777  14 ELILLGAAVVLLLIDAFVRRHSRRATLAVLALLLALVALLFVLGAAGGGTAFGGMLVVDGFALFLKGLILLASLLALLLA 93
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  81 QYHLTKEpwERKKHFLSTLISLQLLLVMTFATtELIMFYILFESTLIPTLVIITRWGNQTERLNAGL-YFLFYTLTGSLp 159
Cdd:PRK05777  94 RPYLEDR--GRGEFYLLVLFALLGMMVMVSAN-DLLTLFLGLELLSLPLYALAALRRDRRRSLEAAIkYFVLGALASGF- 169
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 160 LLVALSYIQSSMGTLNLFMMTYWLQElpNSWSNYLLWTACIM---AFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILl 236
Cdd:PRK05777 170 LLYGMSLLYGATGSLSFAGIAKALAD--GSGNSLLLLFGLVFllvGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAP- 246
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 237 KLGGYGM-MRI-TMILNPLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSLMGATT 314
Cdd:PRK05777 247 KIAAFAVlLRLlVVAFGGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLF 326

                 ....*....
gi 110432575 315 LMIAHGLTS 323
Cdd:PRK05777 327 YLLAYLFMT 335
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
104-327 2.90e-07

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 52.85  E-value: 2.90e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 104 LLLVMTfatTELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLfmmTYWL 183
Cdd:COG1009  125 LGLVLS---DNLLLLFVFWELVGLCSYLLIGFWYEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNF---SELL 198
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 184 QELPNSWSNYLLWTACIMAF---MIKMPLYGLHMWLPKAhVEAPIAGSMIL-AAILLKLGGYGMMRITMILnpltkSMAY 259
Cdd:COG1009  199 AAAPTILSSPLLTLILLLLLlgaFGKSAQFPLHFWLPDA-MEGPTPVSALLhAATMVKAGVYLLARLSPLF-----ALSP 272
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 110432575 260 PFLMLCLW----GMIMTSLICLRQTDLKSLIAYSSVSHMALVIMAILIQtpwSLMGATTLMIAHGLTSSVLF 327
Cdd:COG1009  273 VWLTVVAIigaiTALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVG---AYVAALFHLLTHAFFKALLF 341
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
115-327 8.95e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 51.46  E-value: 8.95e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 115 LIMFYILFESTLIPTLVIItrwGNQTERLN---AGLYFLFYTLTGSLPLLVALSYIQSSMGTlnlfmmtYWLQELPNSWS 191
Cdd:PRK12644 128 LLLLYVFWELTTVLSFLLI---GHYAERAAsrrAALQALLVTTAGGLAMLVGIIILGQAAGT-------YRLSELLADPP 197
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 192 NYLLWTACIMAFMI----KMPLYGLHMWLPKAhVEAPIAGSMIL-AAILLKLGGYGMMRITMILNPLTkSMAYPFLMLCL 266
Cdd:PRK12644 198 TGPAVSVAVVLILVgalsKSAIVPFHFWLPGA-MAAPTPVSAYLhAAAMVKAGIYLVARLAPGFADVP-VWRPTVLVLGL 275
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 110432575 267 WGMIMTSLICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSLMGATTLMIAHGLTSSVLF 327
Cdd:PRK12644 276 ATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLAMLLAHALFKAALF 336
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
129-327 1.09e-06

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 51.05  E-value: 1.09e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 129 TLVIitrWGNQTER-LNAGL-YFLFYTLTGSLpLLVALSYIQSSMGTLnLFMMTYWLQELPNswsnyllWTACImAFMIK 206
Cdd:PRK12668 130 TFLV---WARGTKAaVRAGFrYLLVHVLGGVL-LLAGILLHYAETGSF-AFGAIAGLGGTAA-------WLILI-GFGVN 196
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 207 MPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRitmilnpltksmAYPFLMLCLW-GMIMT---SLICLRQTDL 282
Cdd:PRK12668 197 AAFPPLHAWLPDAYPEATVTGSVFLSAFTTKTAVYALAR------------AFPGTELLIYiGAAMAvygVFFALLENDL 264
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 110432575 283 KSLIAYSSVSHMALVIMAILIQTPWSLMGATTLMIAHGLTSSVLF 327
Cdd:PRK12668 265 RRLLSYHIVSQVGYMVAGIGIGTALAINGAVAHAFNHILYKGLLF 309
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
112-327 1.61e-05

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 46.95  E-value: 1.61e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 112 TTELIMFYILFESTLIPTLVIITRWGNQTERLNAGL-YFLFYTLTGSLPLL-VALSYIQSSMGTLNLFMMTYWLQELPNS 189
Cdd:MTH00196  12 SSNWLSVYLAIELQTLSLFILIAQNRGSGYSAEAGLkYFVLGALSSGLFLFgCALLCGTTGGLHLSYINLVLNSGQSFSS 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 190 WSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAaILLKLGGYGMmrITMILNPLTKsmaypFLMLCLWGM 269
Cdd:MTH00196  92 VSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLA-IVPKLGIFSI--LVSIGLNVNI-----LLIGGLFSL 163
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 110432575 270 IMTSLICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSLMGATTLMIAHGLTSSVLF 327
Cdd:MTH00196 164 FVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFESIQASLVYLFIYIIMSICVF 221
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
80-307 6.13e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 45.35  E-value: 6.13e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  80 SQYHLTKEPweRKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLP 159
Cdd:MTH00208 127 SHYYMSNDP--NKNAFFRLLIIFLLNMLILTSSNNLFLLFIGWEGVGFLSFLLISWWTTRNDANSSALQAVIYNRIGDIG 204
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 160 LLVALSYIQSSMGTLNLFMMTYwLQELPNSWSNYLLWTAcIMAFMIKMPLYGLHMWLPKAhVEAPIAGS-------MILA 232
Cdd:MTH00208 205 IILFLSLSLINFNSWNLNEILS-LNNSNSFLINILLFGI-LLAAAGKSAQFGLHPWLPAA-MEGPTPVSallhsstMVVA 281
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 110432575 233 AILLklggygMMRITMILNPLTKsmaypFLMLCLWGMIMTSL----ICLRQTDLKSLIAYSSVSHMALVIMAILIQTPW 307
Cdd:MTH00208 282 GVFL------LIRTSPLISNSPW-----FLSLCLILGSLTALfaasTAISQHDIKKIIAYSTTSQLGLMVVAIGLNQPN 349
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
59-304 2.20e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 43.79  E-value: 2.20e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  59 DPLSSPLLVLTMWLLPLTVVASQYHLTKEPweRKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGN 138
Cdd:MTH00032  79 DTLSVTMLLVISSISTLVHIYSTSYMSDDP--HVPRFLCYLSLFTFLMMVLVTSDNYLQLFIGWEGVGVCSYLLVAFWTT 156
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 139 QTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLF----------MMTYWLQELPNSWSNYLLWTACIMAFMI--- 205
Cdd:MTH00032 157 RIQANKAAIKAIVVNRVGDVGVILGMVLIYKTIGSLDFLtfnggsvgsgIMDRGYYGGGAYESPLAPFAIIGILLLIgci 236
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 206 -KMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITmilnPLTKSMAYPFLMLCLWGMI---MTSLICLRQTD 281
Cdd:MTH00032 237 gKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSF----PLFEKAPLTLLIITIFGALtafFAATVGLVQND 312
                        250       260
                 ....*....|....*....|...
gi 110432575 282 LKSLIAYSSVSHMALVIMAILIQ 304
Cdd:MTH00032 313 LKKVIAYSTCSQLGYMVLIIGIE 335
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
82-295 3.32e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 43.28  E-value: 3.32e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  82 YHLTKEPWERKKHFLstLISLQLLLVMTFATTELIMFyILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLL 161
Cdd:PRK12649 103 YMSHKEDLPRYYQYL--LLFMGSMIGMVFSGNTIQLF-IFWELTSITSFMLIGYWRHRPESVYGATKSLLITAGGGLFMF 179
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 162 VALSYIQSSMGTLNLFMMTYWLQELPNSWSNYLLWTACIMAFM---IKMPLYGLHMWLPKAhVEAPIAGSMIL-AAILLK 237
Cdd:PRK12649 180 AGFLLLHVITGTYDIATILQDSELIENIKGHPLFLITLILIFIgaaAKSAQGPFYIWLPNA-MEAPTPVSAFLhSATMVK 258
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 110432575 238 LGGYGMMRItmilNPLTKSMAYPFLMLCLWGMI---MTSLICLRQTDLKSLIAYSSVSHMA 295
Cdd:PRK12649 259 AGVYLVARI----HPIFSGTEAWFILVSGTGMItmvLAGFLAFRQTDIKAILAYSTISQLA 315
PRK06591 PRK06591
putative monovalent cation/H+ antiporter subunit D; Reviewed
91-299 4.28e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235837 [Multi-domain]  Cd Length: 432  Bit Score: 42.46  E-value: 4.28e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  91 RKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLpLLVALSYIQSS 170
Cdd:PRK06591 113 RKSLFYGILLFAHTGYLGMIATNDFFNLYVFIEISALSSYVLIASGNNPKSLIGAFDYLIMGSIGATL-ILIAIGFLLSI 191
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 171 MGTLNLFMMTYWLQELPNSwsnyLLWTACIMAFMI----KMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRI 246
Cdd:PRK06591 192 TGSLNMTDIAAYLQEHTNS----RIITIAIGFFLIgailKTAFFPMHFWMMRAYNNTASVILVYLAGISTIIGIYIIYKF 267
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 110432575 247 TMIL---NPLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIM 299
Cdd:PRK06591 268 TYIIigyETIKTAITNFIRPIALATLIIAPYFAYQAKNFKNIIIYSCFTQIGYVFL 323
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
89-301 6.98e-04

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 42.08  E-value: 6.98e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575  89 WERKKHFLSTLISLQLL-LVMTFATTELIMFYILFESTLIPTLVIITRWGNQTErlnAGLYFLFYTLTGSLPLLVALSYI 167
Cdd:PRK06459  67 YDHYGKWLSSLYILTILgMAIVLTSDNYLLFLAGWEIMTIPSYVAIALTKKNKR---PAFVFMAFGELSTVLILAGFAWA 143
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 168 QSSMGTLNLfmmtywlQELPNSWSNYLLwtacIMAFMIKMPLYGLHM--WLPKAHVEAPIAGSMILAAILLKLGGYGMMR 245
Cdd:PRK06459 144 FIISGTTNF-------SYLPSPVPLILA----SFGFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTLMGVYGILK 212
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 110432575 246 ITMILNPLTKSMAYPFLMLC-LWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIMAI 301
Cdd:PRK06459 213 MTILTQTIPIGYFGLTILAIgAFSILFGALYAYVSENVKGLLAFSTIENNGAILVAL 269
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
115-302 4.21e-03

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 39.52  E-value: 4.21e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 115 LIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPNSwsnYL 194
Cdd:PRK12645 132 LIVLYLFWELTSISSFLLISYWYEREASRYGAQKSMLITVFGGLSMLGGFILLYIMTGSFSIREMIANADEIQNS---PL 208
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110432575 195 LWTACIM----AFMiKMPLYGLHMWLPKAhVEAPIAGSMIL-AAILLKLGGYGMMRITmilnPLTKSMAYPFLMLCLWGM 269
Cdd:PRK12645 209 FIPAMILillgAFT-KSAQFPFYIWLPDA-MEAPTPVSAYLhSATMVKAGIYLVARFT----PIFAGSQVWFWTVTLVGL 282
                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 110432575 270 IM---TSLICLRQTDLKSLIAYSSVSHMALvIMAIL 302
Cdd:PRK12645 283 ITlfwGSLNAVKQTDLKGILAFSTVSQLGL-IMSLL 317
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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