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Conserved domains on  [gi|110433064|gb|ABG74271|]
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NADH dehydrogenase subunit 4 (mitochondrion) [Lepilemur sahamalazensis]

Protein Classification

NADH dehydrogenase subunit 4( domain architecture ID 11475903)

NADH dehydrogenase subunit 4 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
1-459 0e+00

NADH dehydrogenase subunit 4; Provisional


:

Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 759.43  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064   1 MLKIIIPTIMLLPMTWYSTNPMVWINITLHSLTISLMSLSFLNQTDNNSNNFSPTFFSDPLSSPLLALTMWLLPLTIMAS 80
Cdd:MTH00110   1 MLKIIIPTIMLIPLTWLSKNNMIWINTTTYSLLISLISLLLLNQPNDNSLNFSLLFFSDSLSTPLLILTTWLLPLMLMAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  81 QHHLSKEPWERKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPL 160
Cdd:MTH00110  81 QHHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 161 LVALSFIQNHMGTLNLFMMTYWSEELPNSWSSNLTWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGG 240
Cdd:MTH00110 161 LVALLYIQNNLGSLNFLLLQLWAQPLPNSWSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 241 YGMMRITMILNPLTKFMAYPFLMLCLWGMVMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
Cdd:MTH00110 241 YGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 321 LTSSMLFCLANSNYERIHNRTMLLTRGLQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIILTGLNM 400
Cdd:MTH00110 321 LTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNM 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 110433064 401 LITATYSLYMLAMTQRGKSLYHMHNFNPSLTRENTLMSMHIFPLLLLTLNPNILMGPTY 459
Cdd:MTH00110 401 LITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGPTY 459
 
Name Accession Description Interval E-value
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
1-459 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 759.43  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064   1 MLKIIIPTIMLLPMTWYSTNPMVWINITLHSLTISLMSLSFLNQTDNNSNNFSPTFFSDPLSSPLLALTMWLLPLTIMAS 80
Cdd:MTH00110   1 MLKIIIPTIMLIPLTWLSKNNMIWINTTTYSLLISLISLLLLNQPNDNSLNFSLLFFSDSLSTPLLILTTWLLPLMLMAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  81 QHHLSKEPWERKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPL 160
Cdd:MTH00110  81 QHHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 161 LVALSFIQNHMGTLNLFMMTYWSEELPNSWSSNLTWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGG 240
Cdd:MTH00110 161 LVALLYIQNNLGSLNFLLLQLWAQPLPNSWSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 241 YGMMRITMILNPLTKFMAYPFLMLCLWGMVMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
Cdd:MTH00110 241 YGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 321 LTSSMLFCLANSNYERIHNRTMLLTRGLQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIILTGLNM 400
Cdd:MTH00110 321 LTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNM 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 110433064 401 LITATYSLYMLAMTQRGKSLYHMHNFNPSLTRENTLMSMHIFPLLLLTLNPNILMGPTY 459
Cdd:MTH00110 401 LITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGPTY 459
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
59-411 3.74e-76

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 246.15  E-value: 3.74e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  59 DPLSSPLLALTMWLLPLTIMASqhhlSKEPWERKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLVIITRWGN 138
Cdd:COG1008   81 DGISLPLVLLTALLTPLAILAS----WNEIKKRPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLIGIWGG 156
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 139 QtERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSEELPNSWSSnLTWMACIMAFMIKMPLYGLHLWLPK 218
Cdd:COG1008  157 E-RRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAELAAAPLPLTAQL-LLFLAFFIAFAVKVPMFPFHTWLPD 234
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 219 AHVEAPIAGSMILAAILLKLGGYGMMRITMILNPL-TKFMAYPFLMLCLWGMVMTSLICLRQTDLKSLIAYSSVSHMALV 297
Cdd:COG1008  235 AHVEAPTAGSVLLAGVLLKMGGYGLLRFALPLFPEaSAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 298 IVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLTRGLQSLLPLMSTWWLLASLTNLALPPSINLIG 377
Cdd:COG1008  315 LLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVG 394
                        330       340       350
                 ....*....|....*....|....*....|....
gi 110433064 378 ELFITMATFSWSNMTIILTGLNMLITATYSLYML 411
Cdd:COG1008  395 EFLVLLGAFQVNPWLAILAALGLILTAAYLLWMY 428
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
59-411 1.73e-68

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 225.97  E-value: 1.73e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064   59 DPLSSPLLALTMWLLPLTIMASQHHLSKepweRKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLVIITRWGN 138
Cdd:TIGR01972  76 DGISLLLVLLTALLTLLAILASWESIQK----RVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGG 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  139 QTeRLNAGLYFLFYTLIGSLPLLVALsfiqnhmgtLNLFMMTYWSEELP-------NSWSSNLTWMACIMAFMIKMPLYG 211
Cdd:TIGR01972 152 PN-RIYAAMKFFLYTLAGSLLMLLAI---------LGLYFLGGGTFDLLellnlplPFGVQTWLFLAFFIAFAVKVPLFP 221
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  212 LHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNP-LTKFMAYPFLMLCLWGMVMTSLICLRQTDLKSLIAYSS 290
Cdd:TIGR01972 222 LHTWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSS 301
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  291 VSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLTRGLQSLLPLMSTWWLLASLTNLALP 370
Cdd:TIGR01972 302 ISHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLP 381
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 110433064  371 PSINLIGELFITMATFSWSNMTIILTGLNMLITATYSLYML 411
Cdd:TIGR01972 382 GTSGFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLY 422
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
112-398 8.49e-67

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 215.64  E-value: 8.49e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  112 ATELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSEELPNSWS 191
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNSSG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  192 SNLTWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKFMAYPFLMLCLWGMVM 271
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  272 TSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANS-NYERIHNRTMLLTRGLQS 350
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSvIYRRVHTRNIRDYGGLAK 240
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 110433064  351 LLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIILTGL 398
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGV 288
 
Name Accession Description Interval E-value
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
1-459 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 759.43  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064   1 MLKIIIPTIMLLPMTWYSTNPMVWINITLHSLTISLMSLSFLNQTDNNSNNFSPTFFSDPLSSPLLALTMWLLPLTIMAS 80
Cdd:MTH00110   1 MLKIIIPTIMLIPLTWLSKNNMIWINTTTYSLLISLISLLLLNQPNDNSLNFSLLFFSDSLSTPLLILTTWLLPLMLMAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  81 QHHLSKEPWERKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPL 160
Cdd:MTH00110  81 QHHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 161 LVALSFIQNHMGTLNLFMMTYWSEELPNSWSSNLTWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGG 240
Cdd:MTH00110 161 LVALLYIQNNLGSLNFLLLQLWAQPLPNSWSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 241 YGMMRITMILNPLTKFMAYPFLMLCLWGMVMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
Cdd:MTH00110 241 YGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 321 LTSSMLFCLANSNYERIHNRTMLLTRGLQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIILTGLNM 400
Cdd:MTH00110 321 LTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNM 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 110433064 401 LITATYSLYMLAMTQRGKSLYHMHNFNPSLTRENTLMSMHIFPLLLLTLNPNILMGPTY 459
Cdd:MTH00110 401 LITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGPTY 459
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
1-441 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 632.23  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064   1 MLKIIIPTIMLLPMTWYSTNPMVWINITLHSLTISLMSLSFLNQTDNNSNNFSPTFFSDPLSSPLLALTMWLLPLTIMAS 80
Cdd:MTH00124   1 MLKIILPTIMLIPTTLLSKPKFLWTNTTTYSLLIALLSLQWLKPPYYPTKNLTQWLGIDQISAPLLVLSCWLLPLMILAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  81 QHHLSKEPWERKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPL 160
Cdd:MTH00124  81 QNHLQHEPLQRKRTFLTTLILLQTFLILAFSATELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLISSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 161 LVALSFIQNHMGTLNLFMMTYWSEELPNSWSSNLTWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGG 240
Cdd:MTH00124 161 LIAILYLHNQTGTLSLPMLQLTHPTLTNSWTNLLLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 241 YGMMRITMILNPLTKFMAYPFLMLCLWGMVMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
Cdd:MTH00124 241 YGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 321 LTSSMLFCLANSNYERIHNRTMLLTRGLQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIILTGLNM 400
Cdd:MTH00124 321 LTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLAT 400
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|.
gi 110433064 401 LITATYSLYMLAMTQRGKSLYHMHNFNPSLTRENTLMSMHI 441
Cdd:MTH00124 401 LITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHI 441
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
1-442 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 576.48  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064   1 MLKIIIPTIMLLPMTWYSTNPMVWINITLHSLTISLMSLSFLNQTDNNSNNFSPTFFSDPLSSPLLALTMWLLPLTIMAS 80
Cdd:MTH00068   1 MLKIIIPTLMLLPTTWLSPKKWLWTLTTTNSLIIAFLSLMWFNLPSETMNFTNKYFGIDQISSPLLILTCWLLPLMILAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  81 QHHLSKEPWERKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPL 160
Cdd:MTH00068  81 QNHLKNEPINRQRTYISMLIILQLTLILAFSATELILFYIFFEATLIPTLIIITRWGNQEERLNAGTYFLFYTLAGSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 161 LVALSFIQNHMGTLNLFMMTYWSEELPNSWSSNLTWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGG 240
Cdd:MTH00068 161 LIALLILQNSLGSLSLILLELMSPMQLMTYTNKIWWLACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 241 YGMMRITMILNPLTKFMAYPFLMLCLWGMVMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
Cdd:MTH00068 241 YGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 321 LTSSMLFCLANSNYERIHNRTMLLTRGLQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIILTGLNM 400
Cdd:MTH00068 321 LTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGLGT 400
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|..
gi 110433064 401 LITATYSLYMLAMTQRGKSLYHMHNFNPSLTRENTLMSMHIF 442
Cdd:MTH00068 401 LITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHIL 442
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
1-441 5.18e-175

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 498.33  E-value: 5.18e-175
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064   1 MLKIIIPTIMLLPMTWYSTNPMVWINITLHSLTISLMSLSFLNQTDNNSNNFSPTFF-SDPLSSPLLALTMWLLPLTIMA 79
Cdd:MTH00127   1 MLKILIPTLMLIPTTWLTPAKWLWTTTLAHSLLIALASLTWLKNLSETGWSSLNLYMaTDPLSTPLLVLTCWLLPLMILA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  80 SQHHLSKEPWERKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLP 159
Cdd:MTH00127  81 SQNHTAPEPINRQRMYITLLTSLQIFLILAFGATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLP 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 160 LLVALSFIQNHMGTLNLFMMTYWSEELPNSWSSNLTWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLG 239
Cdd:MTH00127 161 LLVALLLLQNSTGTLSMLTLQYSQPLQLSSWADKLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 240 GYGMMRITMILNPLTKFMAYPFLMLCLWGMVMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAH 319
Cdd:MTH00127 241 GYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAH 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 320 GLTSSMLFCLANSNYERIHNRTMLLTRGLQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIILTGLN 399
Cdd:MTH00127 321 GLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGLG 400
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|..
gi 110433064 400 MLITATYSLYMLAMTQRGKSLYHMHNFNPSLTRENTLMSMHI 441
Cdd:MTH00127 401 TLITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHL 442
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
3-442 1.05e-162

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 466.72  E-value: 1.05e-162
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064   3 KIIIPTIMLLPMTWYSTNPMVWINITLHSLTISLMSLSFLNQTDNNSNNFSPTFFS-DPLSSPLLALTMWLLPLTIMASQ 81
Cdd:MTH00206   1 KILIPLIMLLLMTILSKKKWLWRSTTFFSFLIALLFLLWFKWSSEVGWSFSNLYLSyDPLSSPLVILSCWLLPLMFLASQ 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  82 HHLSKEPWERKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLL 161
Cdd:MTH00206  81 NHMKNEPINRQRIYITLLIVLQLFLILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 162 VALSFIQNHMGTLNLFMMTYwseELPNSWSSNLTWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGY 241
Cdd:MTH00206 161 IALLFLQNSLGSLSLYILYF---SKLTTWNNNLWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGY 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 242 GMMRITMILNPLTKFMAYPFLMLCLWGMVMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGL 321
Cdd:MTH00206 238 GMMRIILILGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGL 317
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 322 TSSMLFCLANSNYERIHNRTMLLTRGLQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIILTGLNML 401
Cdd:MTH00206 318 VSSALFCLANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFL 397
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|.
gi 110433064 402 ITATYSLYMLAMTQRGKSLYHMHNFNPSLTRENTLMSMHIF 442
Cdd:MTH00206 398 FTAIYSLYMFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLF 438
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
1-442 3.08e-146

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 425.16  E-value: 3.08e-146
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064   1 MLKIIIPTIMLLPMTWYSTNPMVWINITLHSLTISLMSLSFL-NQTDNNSNNFSPTFFSDPLSSPLLALTMWLLPLTIMA 79
Cdd:MTH00044   1 MITLILLSLGIAITSWIVPKNKLWPISISQSSLISLLSLFLLnNHWSSSWHNLSLSLATDSLSSPLIILSCWLAPLSLLA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  80 SQHHLSKEPWERKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLP 159
Cdd:MTH00044  81 SINHLSNNSPNNQRTFISLIIIILTALIITFSSLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLP 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 160 LLVALSFIQNHMGTLNLFMMTYWSEELPNSWSSNLTWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLG 239
Cdd:MTH00044 161 LLISLIAIYSSSSSLSIPLSELNWLTSLSSNSSSIWWIFCILAFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 240 GYGMMRITMILN-PLTKFMAYPFLMLCLWGMVMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIA 318
Cdd:MTH00044 241 GYGLIRLINLFSlPSANNISFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIA 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 319 HGLTSSMLFCLANSNYERIHNRTMLLTRGLQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIILTGL 398
Cdd:MTH00044 321 HGLVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIGL 400
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....
gi 110433064 399 NMLITATYSLYMLAMTQRGKSLYHMHNFNPSLTRENTLMSMHIF 442
Cdd:MTH00044 401 ATVFGAIYSLLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLL 444
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
1-442 6.08e-116

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 347.14  E-value: 6.08e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064   1 MLKIIIPTIMLLPMTWYSTNpmvWINITLHSLTISLMSLSFLNQtDNNSNNFSPTFFSDPLSSPLLALTMWLLPLTIMAS 80
Cdd:MTH00163   1 MLKFLFMLLFLIPLCFLKNS---WWLVQSLLFLLSFLFMLLFSL-SFYFSNISYFFGLDLLSFGLILLSFWICMLMILSS 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  81 QHHLSKEPWerKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPL 160
Cdd:MTH00163  77 ESVYKKNNY--SNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPL 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 161 LVALSFIQNHMGTLNLFMMTYwseelpNSWSSNLTWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGG 240
Cdd:MTH00163 155 LVGIFYLYNNSGSLSFFLLNF------FGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGG 228
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 241 YGMMRITMILNPLTKFMAYPFLMLCLWGMVMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
Cdd:MTH00163 229 YGLLRVMSFFSKLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHG 308
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 321 LTSSMLFCLANSNYERIHNRTMLLTRGLQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIILTGLNM 400
Cdd:MTH00163 309 LCSSGLFCLANIIYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLS 388
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|..
gi 110433064 401 LITATYSLYMLAMTQRGKSLYHMHNFNPSLTRENTLMSMHIF 442
Cdd:MTH00163 389 FFSAAYSLYLYSYSQHGKYYSGLYSCSSGKVREYLLLFLHWL 430
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
37-442 4.56e-114

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 341.43  E-value: 4.56e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  37 MSLSFLNQTDNNSNNFSPTFFSDPLSSPLLALTMWLLPLTIMASQHhlSKEPWERKKYFLFTLISLQLFLIMTFTATELI 116
Cdd:MTH00150   1 LSLLLLYSSFSSYESLSELFSVDSMSSLLISLSLWISGLMMLASQK--SVKLRNKSSSFSLLVLLLCLILVLAFSVSSLL 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 117 MFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSEELPNSWssnLTW 196
Cdd:MTH00150  79 MFYFFFEASLIPTLLLILGWGYQPERLQAGMYMMLYTVGASLPLLLVILWMSSSYGSSFMLLISSLRKLLSSMG---LWG 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 197 MACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKFMAYPFLMLCLWGMVMTSLIC 276
Cdd:MTH00150 156 LLVFLAFLVKLPMYPFHLWLPKAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLIC 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 277 LRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLTRGLQSLLPLMS 356
Cdd:MTH00150 236 LRQSDVKSLIAYSSVGHMSLVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLS 315
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 357 TWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIILTGLNMLITATYSLYMLAMTQRGKSLYHMHNFNPSLTRENTL 436
Cdd:MTH00150 316 LWWFLFCIINMAAPPSLNLLSEIMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLL 395

                 ....*.
gi 110433064 437 MSMHIF 442
Cdd:MTH00150 396 LLLHWV 401
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
22-442 6.88e-106

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 321.54  E-value: 6.88e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  22 MVWINITLHSLTISLMSLSFLNQTDNNSNNFSPTFFSDPLSSPLLALTMWLLPLTIMASQHHLSKEpwERKKYFLFTLIS 101
Cdd:MTH00205  19 KDWSFFSNLLLIGLFFSSFFFSNSFLMTSFISSSFSFDSLSLPLIMLSFWISLLMVLASYKVFKSN--KNSKLFTVSVIM 96
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 102 LQLFLIMTFTATELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTY 181
Cdd:MTH00205  97 LLLILILSFSVDNLLLFYITFEASLIPTLILILGWGYQPERLQASMYMMMYTLCASLPLLIGLFFLNSLNFSLSMFFNFP 176
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 182 WSEelpNSWSSNLTWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKFMAYPF 261
Cdd:MTH00205 177 LNF---SDFYLFLYWIFLMLAFLVKLPMYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLIRITSMLYKLNSNFSELF 253
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 262 LMLCLWGMVMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRT 341
Cdd:MTH00205 254 FSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSSGMFALANVNYERTNSRS 333
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 342 MLLTRGLQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIILTGLNMLITATYSLYMLAMTQRGKSLY 421
Cdd:MTH00205 334 MLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISFLSGAYSLYLYSQSQHGKVSS 413
                        410       420
                 ....*....|....*....|.
gi 110433064 422 HMHNFNPSLTRENTLMSMHIF 442
Cdd:MTH00205 414 QISSFLAISEREYYILILHWF 434
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
1-442 3.47e-105

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 320.15  E-value: 3.47e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064   1 MLKIIIPTIMLLPMTWYsTNPMVWINITLHSLTISLMSLSFLNQTDNNSNNFSPTFFSDPLSSPLLALTMWLLPLTIMAS 80
Cdd:MTH00014   1 MLKLIMPLISLLLLPLI-KYPWSWALTFSTLLLLSLFTLLNLYPMSAPYSMFTESLSSDMLSAPLITLTLWITALMILAS 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  81 QH--HLSKEPwerkKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSL 158
Cdd:MTH00014  80 FKifQNNKAP----KTFMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASL 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 159 PLLVALSFIQNHMGTLNLFMMTYWSeelPNSWSSNLTWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKL 238
Cdd:MTH00014 156 PLLMSILLIFYTNNSLSMLMSSMEP---PSIYLMNLWWLITILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKL 232
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 239 GGYGMMRITMILNPLTKFMAYPFLMLCLWGMVMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIA 318
Cdd:MTH00014 233 GGYGLLRMSSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIA 312
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 319 HGLTSSMLFCLANSNYERIHNRTMLLTRGLQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIILTGL 398
Cdd:MTH00014 313 HGLCSSALFALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLAI 392
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....
gi 110433064 399 NMLITATYSLYMLAMTQRGKSLYHMHNFNPSLTRENTLMSMHIF 442
Cdd:MTH00014 393 TSFLAAAYSLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLV 436
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
59-411 3.74e-76

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 246.15  E-value: 3.74e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  59 DPLSSPLLALTMWLLPLTIMASqhhlSKEPWERKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLVIITRWGN 138
Cdd:COG1008   81 DGISLPLVLLTALLTPLAILAS----WNEIKKRPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLIGIWGG 156
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 139 QtERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSEELPNSWSSnLTWMACIMAFMIKMPLYGLHLWLPK 218
Cdd:COG1008  157 E-RRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAELAAAPLPLTAQL-LLFLAFFIAFAVKVPMFPFHTWLPD 234
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 219 AHVEAPIAGSMILAAILLKLGGYGMMRITMILNPL-TKFMAYPFLMLCLWGMVMTSLICLRQTDLKSLIAYSSVSHMALV 297
Cdd:COG1008  235 AHVEAPTAGSVLLAGVLLKMGGYGLLRFALPLFPEaSAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 298 IVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLTRGLQSLLPLMSTWWLLASLTNLALPPSINLIG 377
Cdd:COG1008  315 LLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVG 394
                        330       340       350
                 ....*....|....*....|....*....|....
gi 110433064 378 ELFITMATFSWSNMTIILTGLNMLITATYSLYML 411
Cdd:COG1008  395 EFLVLLGAFQVNPWLAILAALGLILTAAYLLWMY 428
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
52-410 6.50e-72

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 234.95  E-value: 6.50e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  52 FSPTFFS-DPLSSPLLALTMWLLPLTIMASqhhlskepWERKKY----FLFTLISLQLFLIMTFTATELIMFYILFESTL 126
Cdd:MTH00217  71 FGPVVFAvDGISIFFLILTALLTPICILIS--------WNSIKFlikeFLLCLLVIEILLMGVFTILDLVGFYILFEGIL 142
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 127 IPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNlfMMTYWSEELPNSWSsNLTWMACIMAFMIK 206
Cdd:MTH00217 143 IPMFLIIGIWGSREEKVQASYYFFFYTFIGSVFMLLGIFTLYSYAGTTD--YQALCCLKIEKELQ-YFIFLGFFLSLAIK 219
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 207 MPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPL-TKFMAYPFLMLCLWGMVMTSLICLRQTDLKSL 285
Cdd:MTH00217 220 IPKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFSWPLLPEaSEYFSPLIQTLSLLAIIYGSLTTCRQVDLKRI 299
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 286 IAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLTRGLQSLLPLMSTWWLLASLT 365
Cdd:MTH00217 300 IAYSSVAHMGLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILMLLLVLA 379
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 110433064 366 NLALPPSINLIGELFITMATFSWSNMTIILTGLNMLITATYSLYM 410
Cdd:MTH00217 380 NASIPLSCNFVGEFLSLLAAFEYSYIVGVLASLGMVLSAGYSIYL 424
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
59-410 3.53e-70

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 230.86  E-value: 3.53e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  59 DPLSSPLLALTMWLLPLTIMASQHhlskEPWERKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLVIITRWGn 138
Cdd:PRK05846  81 DGISLLLVVLTALLTPLAVLASWE----EIKKRVKFYMAALLWLEGGVIGVFAALDLLLFYVFFEAMLIPMYFLIGVWG- 155
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 139 QTERLNAGLYFLFYTLIGSLPLLVALSFI----QNHMGTLNLfmMTYWSEELPNSWSsNLTWMACIMAFMIKMPLYGLHL 214
Cdd:PRK05846 156 GKNRIYAATKFFLYTLLGSLLMLVAIIYLvvvyYNATGTFDI--ADLLNLPLPPGVQ-YWLFLAFFIAFAVKMPMFPLHT 232
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 215 WLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPL-TKFMAYPFLMLCLWGMVMTSLICLRQTDLKSLIAYSSVSH 293
Cdd:PRK05846 233 WLPDAHVQAPTAGSVLLAGILLKMGAYGLLRFSLPLFPDaSHEFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISH 312
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 294 MALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLTRGLQSLLPLMSTWWLLASLTNLALPPSI 373
Cdd:PRK05846 313 MGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTS 392
                        330       340       350
                 ....*....|....*....|....*....|....*..
gi 110433064 374 NLIGELFITMATFSWSNMTIILTGLNMLITATYSLYM 410
Cdd:PRK05846 393 GFVGEFLILLGSFQVNPVIAFIATTGLILAAVYSLWL 429
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
51-410 7.19e-70

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 229.56  E-value: 7.19e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  51 NFSPTFFS-DPLSSPLLALTMWLLPLTIMASQH---HLSKEpwerkkyFLFTLISLQLFLIMTFTATELIMFYILFESTL 126
Cdd:MTH00204  73 QWGPLVFAvDGVSLFFILLTTLLIPICILISWKsikFLFKE-------FLLCLLFLEVLLIGVFSVLDLLLFYILFEGIL 145
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 127 IPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTywSEELPNSwSSNLTWMACIMAFMIK 206
Cdd:MTH00204 146 IPMFLLIGIWGSREEKVRASYYFFFYTFAGSVFMLLGIFQLYSITGTTDYQILL--NIKLPLS-IQKWLLVGFFLSLAVK 222
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 207 MPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKFMAYPF-LMLCLWGMVMTSLICLRQTDLKSL 285
Cdd:MTH00204 223 IPQIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGFLRFSWPLFPAASEYFAPLiVMLSVIAVIYGSLTTCRQVDFKRL 302
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 286 IAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLTRGLQSLLPLMSTWWLLASLT 365
Cdd:MTH00204 303 IAYSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIMLVLSLA 382
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 110433064 366 NLALPPSINLIGELFITMATFSWSNMTIILTGLNMLITATYSLYM 410
Cdd:MTH00204 383 NMGFPLSCNFVGEFFSLLAAFEYSLGLGVLVTSGMVWSAAYSLYL 427
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
59-411 1.73e-68

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 225.97  E-value: 1.73e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064   59 DPLSSPLLALTMWLLPLTIMASQHHLSKepweRKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLVIITRWGN 138
Cdd:TIGR01972  76 DGISLLLVLLTALLTLLAILASWESIQK----RVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGG 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  139 QTeRLNAGLYFLFYTLIGSLPLLVALsfiqnhmgtLNLFMMTYWSEELP-------NSWSSNLTWMACIMAFMIKMPLYG 211
Cdd:TIGR01972 152 PN-RIYAAMKFFLYTLAGSLLMLLAI---------LGLYFLGGGTFDLLellnlplPFGVQTWLFLAFFIAFAVKVPLFP 221
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  212 LHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNP-LTKFMAYPFLMLCLWGMVMTSLICLRQTDLKSLIAYSS 290
Cdd:TIGR01972 222 LHTWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSS 301
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  291 VSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLTRGLQSLLPLMSTWWLLASLTNLALP 370
Cdd:TIGR01972 302 ISHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLP 381
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 110433064  371 PSINLIGELFITMATFSWSNMTIILTGLNMLITATYSLYML 411
Cdd:TIGR01972 382 GTSGFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLY 422
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
112-398 8.49e-67

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 215.64  E-value: 8.49e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  112 ATELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSEELPNSWS 191
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNSSG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  192 SNLTWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKFMAYPFLMLCLWGMVM 271
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  272 TSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANS-NYERIHNRTMLLTRGLQS 350
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSvIYRRVHTRNIRDYGGLAK 240
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 110433064  351 LLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIILTGL 398
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGV 288
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
56-409 1.09e-62

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 211.32  E-value: 1.09e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  56 FFSDPLSSPLLALTMWLLPLTIMASQHHLSKepweRKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLVIITR 135
Cdd:MTH00226  98 FAVDGISIYFIILTGFIVPCSILISWHSVKY----LTKSFLICMLILEFLLYAVFSVLDIFMFYILFEGVLIPMYLILGI 173
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 136 WGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSEELPNSWSSNLtWMACIMAFMIKMPLYGLHLW 215
Cdd:MTH00226 174 WGSREEKMQAAYYFFFYTLIGSVLMLLCLFSLYNIHGTTDYLTLASCSHVVSEQTQKWI-FLGIFLAMAVKIPIFPFHIW 252
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 216 LPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPL-TKFMAYPFLMLCLWGMVMTSLICLRQTDLKSLIAYSSVSHM 294
Cdd:MTH00226 253 LPKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLgAQNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHM 332
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 295 ALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLTRGLQSLLPLMSTWWLLASLTNLALPPSIN 374
Cdd:MTH00226 333 GLVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGN 412
                        330       340       350
                 ....*....|....*....|....*....|....*
gi 110433064 375 LIGELFITMATFSWSNMTIILTGLNMLITATYSLY 409
Cdd:MTH00226 413 FIGEYLSILSSFNWNPIIGVFVCSGVILSAVYSFY 447
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
102-442 3.11e-46

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 165.08  E-value: 3.11e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 102 LQLFLIMTFTATELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSfiqnhmgtLNLFMMTY 181
Cdd:MTH00094  71 LILICLLFFVSSNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLFVYL--------KNFFFFSL 142
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 182 WSEELPNSWSSNLTwmaCIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRitmILNPLTKFMAYPF 261
Cdd:MTH00094 143 CYFDFFLSWEMFFI---LSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLR---ILGSLNFVYNNFW 216
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 262 LMLCLWGMVMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRT 341
Cdd:MTH00094 217 IIFSLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRL 296
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 342 MLLTRGLQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIILTGLNMLITATYSLYMLAMTQRGKSLY 421
Cdd:MTH00094 297 IYFMNSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIVSSFMGKKFS 376
                        330       340
                 ....*....|....*....|.
gi 110433064 422 HMHNFNPSLTRENTLMSMHIF 442
Cdd:MTH00094 377 NFNNFNVGLSLPLVFMMFNMF 397
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
52-415 5.68e-44

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 159.54  E-value: 5.68e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  52 FSPTFFSDPLSSPLLALTMWLLPLTIMASQHHLSkepWERKKYFLFTLISLQLF-LIMTFTATELIMFYILFESTLIPTL 130
Cdd:COG0651   68 FGIVLVADRLSALFLLLTALVALAVLLYSIGYMR---HERRGRRFYPLFLLLLAgMNGAFLTGDLFNLFVFFEVMLLASY 144
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 131 VIITRWGNQtERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSEELPNSWSSnLTWMACIMAFMIKMPLY 210
Cdd:COG0651  145 GLVALGGTK-EALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLAELDPGLLL-AAFALLLVGFGIKAALF 222
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 211 GLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNP--LTKFMAYPFLMLCLWGMVMTSLICLRQTDLKSLIAY 288
Cdd:COG0651  223 PLHFWLPDAYPAAPSPVSALLSGLLTKVGVYAILRVLTLLFGadPALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAY 302
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 289 SSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLTRGLQSLLPLMSTWWLLASLTNLA 368
Cdd:COG0651  303 SSVSQIGYILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAG 382
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 110433064 369 LPPSINLIGELFITMATFSWSNMTIILTGL-NMLITATYSLYMLAMTQ 415
Cdd:COG0651  383 LPPLSGFVSKWLLLQAALEAGAWLLAAVLLlSSLLTLAYFVRIFGRAQ 430
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
59-411 8.42e-43

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 157.89  E-value: 8.42e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  59 DPLSSPLLALTMWLLPLTIMASQHhLSKEPwerkKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLVIITRWGN 138
Cdd:PRK12561  58 DGLSMPLVLLSGLITTLSIFASWK-VTRKP----RLFYFLMLVLYSAQIGVFLAQDLLLFFLMWELELVPVYLLISIWGG 132
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 139 QtERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSEELPNSWSSnLTWMACIMAFMIKMPLYGLHLWLPK 218
Cdd:PRK12561 133 Q-KRLYAATKFILYTALASIFILVAGLALALSGDTFTFDLAELGAKSYPLALEL-LLYAGFLIAFGVKLPIFPLHTWLPD 210
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 219 AHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKFMAYPFLM-LCLWGMVMTSLICLRQTDLKSLIAYSSVSHMALV 297
Cdd:PRK12561 211 AHGEASAPVSMILAGVLLKMGGYALIRFNVQMLPDAHVYFAPALAiLGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFV 290
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 298 IVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLTRGLQSLLPLMSTWWLLASLTNLALPPSINLIG 377
Cdd:PRK12561 291 LLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMPKTFALFTASSMASLALPGMSGFVS 370
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 110433064 378 EL--FITMA-----TFSWSNMTIILTGLNMLITATYSLYML 411
Cdd:PRK12561 371 ELtvFLGITssdvySSTFRTITILLAAVGLILTPIYLLSML 411
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
58-411 4.81e-37

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 142.15  E-value: 4.81e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  58 SDPLSSPLLALTMWLLPLTIMASqhhlskepWE---RKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLVIIT 134
Cdd:PRK02546  85 ADGLSMPLILLTGFITTLAVLAA--------WPvtfKPKLFYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLLA 156
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 135 RWGNQtERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSEELPNSWSsNLTWMACIMAFMIKMPLYGLHL 214
Cdd:PRK02546 157 IWGGK-KRQYAATKFILYTAGSSLFILLAALAMAFYGDTPTFDMTALAAKDFGLGFQ-LLCYAGLLIAYGVKLPIVPLHT 234
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 215 WLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKFMAYPFL-MLCLWGMVMTSLICLRQTDLKSLIAYSSVSH 293
Cdd:PRK02546 235 WLPDAHGEATAPVHMLLAGILLKMGGYALLRMNAGMLPDAHAQFAPLLiVLGVVNIIYAALTSFAQRNLKRKIAYSSISH 314
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 294 MALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLTRGLQSLLPLMSTWWLLASLTNLALPPSI 373
Cdd:PRK02546 315 MGFVLIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAMWTACSLASLALPGMS 394
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 110433064 374 NLIGEL--FITMATFSWSNMT-----IILTGLNMLITATYSLYML 411
Cdd:PRK02546 395 GFVAELmvFVGFATSDAYTLPfrvvvVFLAAVGVILTPIYLLSML 439
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
59-416 1.40e-36

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 140.61  E-value: 1.40e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  59 DPLSSPLLALTMWLLPLTIMASQHHLskepwERKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLVIITRWGN 138
Cdd:PRK06473  78 DGLSLPLLVLNSLLTLIAIYSSDESI-----QRPRFYYSLLLLLNAGVSGAFLAQDLLLFFLFYELELIPLYLLIAIWGG 152
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 139 QtERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSEELPNSwSSNLTWMACIMAFMIKMPLYGLHLWLPK 218
Cdd:PRK06473 153 Q-RRGYAATKFLLYTAISGILILVSFLGLVWLSGASSFDYEPLRSHTLPLS-TQLLLLAPILVGFGIKIPLVPFHTWLPD 230
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 219 AHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKFMAYPFL-MLCLWGMVMTSLICLRQTDLKSLIAYSSVSHMALV 297
Cdd:PRK06473 231 AHVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPWLaTWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 298 IVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLTRGL---QSLLPLMSTWWLLASLTNLALPPSIN 374
Cdd:PRK06473 311 LLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLlnpERGLPITGSLMILGVMASAGIPGMVG 390
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 110433064 375 LIGELFITMATFswsNMTIILTGLNMLITATYSLYMLAMTQR 416
Cdd:PRK06473 391 FIAEFLVFRGSF---PIFPVQTLLCMIGTGLTAVYFLLLVNR 429
ndhD CHL00011
NADH dehydrogenase subunit 4
107-427 2.18e-34

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 134.30  E-value: 2.18e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 107 IMTFTATELIMFYILFESTLIPTLVIITRWGNQtERLNAGLYFLFYTLIGSLPLLVA---LSFIQNHMGTLNLFMMTYWS 183
Cdd:CHL00011 126 IGLFSSRDLLLFFIMWELELIPVYLLLSMWGGK-KRLYSATKFILYTAGGSIFLLIGvlgMGLYGSNEPTLNFETLANQS 204
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 184 EELPnswSSNLTWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKFMAYPFLM 263
Cdd:CHL00011 205 YPVA---LEILFYIGFLIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLV 281
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 264 LC-LWGMVMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIhnRTM 342
Cdd:CHL00011 282 IVgAIQIIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRI--RLV 359
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 343 LLTR--GLQSLLPLMSTWWLLASLTNLALPPSINLIGEL-----FITMATFSWSNMTII--LTGLNMLITATYSLYMLAM 413
Cdd:CHL00011 360 YLDEmgGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELivffgIITSQKYLLMPKILItfVMAIGMILTPIYLLSMLRQ 439
                        330
                 ....*....|....
gi 110433064 414 TQRGKSLYHMHNFN 427
Cdd:CHL00011 440 MFYGYKLFNVPNSY 453
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
59-418 2.04e-30

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 123.28  E-value: 2.04e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  59 DPLSSPLLALTMWLLPLTIMASQHHLskepwERKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLVIITRWGN 138
Cdd:PRK07363  78 DGLSLPLLVLNSLLTWIAIYSIGENT-----ERPRLYYSLILLINGGIAGALLAQNLLLFFLFYELELIPFYLLIAIWGG 152
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 139 QtERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSEELPNSwSSNLTWMACIMAFMIKMPLYGLHLWLPK 218
Cdd:PRK07363 153 E-KRGYASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSFDYDAISTQNLSLN-TQLILLTGLLLGFGIKIPLVPLHTWLPD 230
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 219 AHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKFMAYPflMLCLWGMVMT---SLICLRQTDLKSLIAYSSVSHMA 295
Cdd:PRK07363 231 AYTEASPAVAILLGGVLAKLGTYGLLRFGLQLFPQTWSLVAP--GLAIIGTISViygALSAIAQKDIKRMVAYSSIGHMG 308
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 296 LVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLTRGLQSL---LPLMSTWWLLASLTNLALPPS 372
Cdd:PRK07363 309 YILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGLMNPirgLPLTSALLVLAGMASAGIPGL 388
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*.
gi 110433064 373 INLIGELFITMATFSWSNMTIILTGLNMLITATYSLYMLAMTQRGK 418
Cdd:PRK07363 389 VGFVAEFIVFQGSFSTFPIPTLLCIVASGLTAVYFVILLNRTCFGR 434
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
55-406 1.55e-28

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 117.67  E-value: 1.55e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  55 TFFSDPLSSPLLALTMWLLPLTIMASQHhlSKEPWERKKYFLFtLISLQLFLIMTFTATeLIMFYILFESTLIPTLVIIT 134
Cdd:PRK08375  72 ELRADSLSALFLLVTSILAIAALLYAIG--YGEHRQTRFYALF-LLLLAGLLGALLTAD-LFNLFVFLEIMSLSSYALVA 147
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 135 RWGNQtERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMtywSEELPNSWSSNLTWMACIMAFMIKMPLYGLHL 214
Cdd:PRK08375 148 MGGDR-RALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADL---AGALAENPTVVTAFGFVLLALALKAAVFPLHT 223
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 215 WLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKF----MAYPFLMLCLWGMVMTSLICLRQTDLKSLIAYSS 290
Cdd:PRK08375 224 WLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYFTVFGGDFRfalgLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYST 303
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 291 VSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLTRGLQSLLPLMSTWWLLASLTNLALP 370
Cdd:PRK08375 304 VSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLGRRMPLTAAAFAVASLSLIGVP 383
                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 110433064 371 PSINLIGELFITMATFS---WSNMTIILTGlnMLITATY 406
Cdd:PRK08375 384 PTSGFVSKWYLVVGAVEagqWLVLAVLLAS--SLLALLY 420
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
59-408 1.24e-23

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 103.51  E-value: 1.24e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  59 DPLSSPLLALTMWLLPLTIMASQHHLSKEpwERKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLVIITRWGN 138
Cdd:PRK12667  81 DLLGALLGLLTALVMFLILIYSYWYLEHE--SGPEWYYTLLLGLEAGMLGILLTGDAFNLFVMLEVLSISAYGLVAYYRD 158
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 139 QTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSEELPNS----------WSSNLTWMACIMAFMIKMP 208
Cdd:PRK12667 159 RGDAVEAAIKYALIGAVGTTLYFLALAFLYATFGTLNMADLSAKIRGLSFPltgglagnppLALGVALALALWAFTIKAA 238
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 209 LYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRI-------TMILNPLTKFMAYPFLMLCLWGMVMTSLICLRQTD 281
Cdd:PRK12667 239 IFPNHFWLPDAHPAAPSPVSAMLSGLVVNVGAYAIIRFlytifgiSPSLIDFRAALSPILIILGAVSAIIGALMMVVQKD 318
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 282 LKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLTRGLQSLLPLMSTWWLL 361
Cdd:PRK12667 319 VKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFLI 398
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*..
gi 110433064 362 ASLTNLALPPSINLIGELFITMATFSWSnmtIILTGLNMLITATYSL 408
Cdd:PRK12667 399 GALSLVGIPPLNGFFSKLLLFNALLESG---FYLPALVLLIASAISL 442
Oxidored_q5_N pfam01059
NADH-ubiquinone oxidoreductase chain 4, amino terminus;
1-109 2.98e-21

NADH-ubiquinone oxidoreductase chain 4, amino terminus;


Pssm-ID: 366442 [Multi-domain]  Cd Length: 110  Bit Score: 88.35  E-value: 2.98e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064    1 MLKIIIPTIMLLPMTWYSTNPMVWINITLHSLTISLMSLSFLNQ-TDNNSNNFSPTFFSDPLSSPLLALTMWLLPLTIMA 79
Cdd:pfam01059   1 MLKILLPTLMLIPLTFLSKPKWLWTTSTLYSLLLALLSLLLLNNpSNFSWSNLSYFLGIDSLSYPLIILSCWLLPLMILA 80
                          90       100       110
                  ....*....|....*....|....*....|
gi 110433064   80 SQHHLSKEPWERKKYFLFTLISLQLFLIMT 109
Cdd:pfam01059  81 SQKHLKSEPNNRQRTFIFLLILLQLFLILT 110
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
206-398 2.40e-19

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 90.37  E-value: 2.40e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 206 KMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMIL--NPLTKFMAYPFLMLCLWGMVMTSLICLRQTDLK 283
Cdd:PRK06458 227 KVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRYYILIdaAIGSDFPGRLLLIFGLLSVLVAAFFLLRQRDIK 306
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 284 SLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLTRGLQSLLPLMSTWWLLAS 363
Cdd:PRK06458 307 RLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPLTGWGLMLGA 386
                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 110433064 364 LTNLALPPSINLIGELFITMATFS---WSNMTIILTGL 398
Cdd:PRK06458 387 LAIAGMPPFGVFISEFLILTAGLArgpLLIAILLLLLL 424
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
96-395 1.00e-16

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 81.89  E-value: 1.00e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  96 LFTLISLqLFLIMTFTATELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLN 175
Cdd:MTH00062  75 FFLFLSL-IFSILCFCVNNSLLFWFFYELSIIPLLYLLFSESPYSERYLASWYFLGYLLLTSLPLLLCLLYLSLVNGSFN 153
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 176 LFMmtyWSEELPNSWSSNltWMACIMaFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTK 255
Cdd:MTH00062 154 FSD---WGSDDSVSLIVY--YVLSFM-FITKVPLFPFHTWLPIVHAEASSPVSIFLSGYIMKLGLLGVYRFCGFIFSGSF 227
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 256 FMaypFLMLCLWGMVMTSLICLRQTDLKSLIAYSSVSHMaLVIVAILIQTPWSFMGATALM-IAHGLTSSMLFCLANSNY 334
Cdd:MTH00062 228 LG---YLFLCCLFSVFFLITACSELDGKRWLAFLSLSHI-LVPVLGLFVGDWSSINLSFFYcLGHGLSAGLVFLLLWCFY 303
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 110433064 335 ERIHNRTMLLTRGLQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIIL 395
Cdd:MTH00062 304 EVSGSRNWVLLKSGINGSLVLRVIVVFSFLSLCSFPPTIQFFCEVFLVSSSFGVLVYLLFW 364
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
52-386 1.92e-15

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 78.62  E-value: 1.92e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  52 FSPTFFSDPLSSPLLALTMWLLPLTIMASQHHLSKEPWERKKYFLFTLISLQLF-LIMTFTATELIMFYILFESTLIPTL 130
Cdd:PRK08667  69 LDITFHIDRLAAFFIILIGLVSLCVAIYSLGYNEHMSSNERANLLSALTALFILsMLGVVASANTFSFLFFWEIMALSSF 148
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 131 VIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSEELPnswssnLTWMACIMAFMIKMPLY 210
Cdd:PRK08667 149 FLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAGILS------LVFLLLFLGFGIKAGII 222
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 211 GLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRItmILNPLTKFMAYPFLMLCLwGMVMTSL---ICLRQTDLKSLIA 287
Cdd:PRK08667 223 PFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRF--LMDVLSPELWWGVLILLA-GSISALLgviYALKEHDLKGLLA 299
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 288 YSSVSHMALVIVAILIQTPWSFMGATALM-----------IAHGLTSSMLFCLANSNYERIHNRTMLLTRGLQSLLPLMS 356
Cdd:PRK08667 300 YSSIENIGIILMGIGLYVIFGVYGLDTLAllalggalfhsLNHALFKSLLFLTAGSVVHATGTRNIEKMGGLVKLMPYTS 379
                        330       340       350
                 ....*....|....*....|....*....|
gi 110433064 357 TWWLLASLTNLALPPSINLIGELFITMATF 386
Cdd:PRK08667 380 ALFLVGAVSIAALPPFNGFASELLLYESFF 409
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
108-379 2.86e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 77.70  E-value: 2.86e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 108 MTFTATELIMFYILFESTLIPTLVIITRwGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSEELP 187
Cdd:PRK12665 126 NAFLAGDLFNLYVGFEILLVASYVLLTL-GATAARVRAGVTYVMVSMVSSLLFLIGIALVYAATGTLNMADLAVRLDELP 204
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 188 NSWSSNLTWMAcIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKFMAypFLMLC-L 266
Cdd:PRK12665 205 SGTRTALFAVL-LVAFGIKAAVFPLSFWLPDSYPTAPAPVTAVFAGLLTKVGVYAIIRTHTLLFPGGGLDT--LLMVVaL 281
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 267 WGMVMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFcLANSNYERiHNRTMLLTR 346
Cdd:PRK12665 282 LTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLF-LVVGLIER-QAGSSSLRR 359
                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 110433064 347 --GLQSLLPLMSTWWLLASLtNLA-LPPSINLIGEL 379
Cdd:PRK12665 360 lgGLAKASPLLAVLFFVPAL-NLGgIPPFSGFIGKV 394
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
94-327 3.64e-15

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 77.73  E-value: 3.64e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  94 YFLFTLISLqLFLIMTFTATELIMFYILFESTLIPTLVIITRwGNQTERLNAGLYFLFyTLIGSLPLLVALSFIQNHMGT 173
Cdd:PRK08668 100 FNMFALMSL-AGVLGVFLANDLLTLYIFWEIMTFSSFMMVPM-GKKESRKASLKYFVL-SAIGAYAMLYAIFLIYAKTGT 176
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 174 LNLFMMtywSEELPNSWSSNLTWMAC--IMAFMI-KMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGM------M 244
Cdd:PRK08668 177 FDFADI---SQGLINDTSTGFALIVFlfLLAFGVaKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSKLGAYGFllvlyvL 253
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 245 RITMILNPLTKFM-----AYPFLMLCLWGMVMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAH 319
Cdd:PRK08668 254 PGTKLFSEFGTYRgvplfNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNH 333

                 ....*...
gi 110433064 320 GLTSSMLF 327
Cdd:PRK08668 334 ALFKGLFF 341
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
52-398 8.62e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 76.14  E-value: 8.62e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  52 FSPTFFSDPLSSPLLALTMWLLPLTIMASQHHLSKEpweRKKYFLFTLIslqLFLIM----TFTATELIMFYILFESTLI 127
Cdd:PRK07691  69 FGIVFVADMFAALLVLTSSIITFLVILYSFQTIGIE---RERYYYYPSV---LFMLAgvngAFLTGDIFNLFVFFEVMLM 142
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 128 PTLVIITRWGNQTErLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSEELPNSWSSNLTWMAC--IMAFMI 205
Cdd:PRK07691 143 ASYVLIVIGGTKIQ-LRESIKYVLINVVSSAFFVVAVAILYSVVGTLNMADISVKIAELSAGQTGLITVVAIlfLFVFAT 221
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 206 KMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRI-TMILNPLTKFMAYPFLMLCLWGMVMTSLICLRQTDLKS 284
Cdd:PRK07691 222 KAGLFPLYFWLPGSYYAPPIAIAALFGALLTKVGVYAIARTfTLFFSHDTSFTHYLILILALLTIIFGVIGAVAYFDIKK 301
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 285 LIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLTRGLQSLLPLMSTWWLLASL 364
Cdd:PRK07691 302 IIIYNIMIAVGVILVGVAMMTESGMIGAIYYLIHDMIVKAALFLLIGIMIKITGTTDLKKMGGLIKRYPVLGWMFFIAAL 381
                        330       340       350
                 ....*....|....*....|....*....|....
gi 110433064 365 TNLALPPSINLIGELFITMATFSWSNMTIILTGL 398
Cdd:PRK07691 382 SLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVL 415
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
104-387 5.49e-14

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 73.65  E-value: 5.49e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 104 LFLIMTFTATELIM------FYILFESTLIpTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLF 177
Cdd:PRK08377 113 LFLLLMLGATGMIAtgdifnLFVFMEITAI-TAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGTLNMA 191
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 178 MMTYWSEELpNSWSSNLTWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKFM 257
Cdd:PRK08377 192 HIAQLAGTI-DPTVAQVGLALLIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLMQNANGWS 270
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 258 AYPFLMLCLWGM--VMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYE 335
Cdd:PRK08377 271 SVLKLVIIMATLtvFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLFLAVGYVGI 350
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 110433064 336 RIHNRTMLLTRGLQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFS 387
Cdd:PRK08377 351 TLGGTEIEKFEGLGKRMPLTALALTIGALSTVGIPLFNVFWSKFRIILAGLS 402
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
94-327 7.58e-14

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 73.25  E-value: 7.58e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  94 YFLFTLisLQLFLIMTFTATELIMFYILFE-STLIPTLVIITRwgNQTERLNAGLYFLF-------YTLIGsLPLLVALS 165
Cdd:PRK08676 105 YLGFNL--LLSVITFAFFSDNLALFWIFAElTTVFSAMLIAIL--SARENIDAALKYIFiastamiFAFIG-LIFLFSLT 179
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 166 FIQNHMGTLNLFMMTYWSEELPNSWSSnLTWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMR 245
Cdd:PRK08676 180 RQALGTGTLNWTELAAHASLLSPSVLG-ASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILR 258
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 246 ITMILNPLTKFMAYPFLMLCLwGMVMTSLIC---LRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLT 322
Cdd:PRK08676 259 LSALLRQSGAAEQFSNVLIGL-GIFSIAVAAfsmLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLV 337

                 ....*
gi 110433064 323 SSMLF 327
Cdd:PRK08676 338 KSGLF 342
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
115-404 1.62e-13

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 72.64  E-value: 1.62e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 115 LIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSEELPNS-WSSN 193
Cdd:PRK12647 117 LITLFVFWELTSITSFLLIGFNHEREAARRAALQALLVTGGGGLALLAGLILLGNVTGTYSLSELLASGDVIREHpLYLA 196
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 194 LTWMACIMAFMiKMPLYGLHLWLPKAhVEAPIAGSMIL-AAILLKLGGYGMMRitmiLNPLTKFMAYPFLMLCLWG---M 269
Cdd:PRK12647 197 ILLLVLGGAFT-KSAQFPFHFWLPNA-MEAPTPVSAYLhSATMVKAGIYLLAR----LNPVLGGTPLWQTILPLFGgltM 270
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 270 VMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLTRGLQ 349
Cdd:PRK12647 271 LTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLVAHSLYKGALFMVAGIIDHETGTRDITKLGGLR 350
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 110433064 350 SLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIILTGL----NMLITA 404
Cdd:PRK12647 351 RAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALLEAPLWSLILTVAavlgNALMVA 409
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
111-401 1.13e-12

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 69.62  E-value: 1.13e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 111 TATELIMFYILFESTLIPTLVIITRWGNQtERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSEELpnsw 190
Cdd:PRK06525 131 YSSTLLGLLLFFEITGLCSWALISYYQSP-KALRSALKALLITHIGSLGLYLAAATLFLQTGTFALSALSGLHGSL---- 205
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 191 sSNLTWMACIMAFMIKMPLYGLHLWLPKAhVEAPIAGSMIL-AAILLKLGGYGMMRITMILNPLTKFMAYPFLMLCLWGM 269
Cdd:PRK06525 206 -KYLVFLGILFAAWGKSAQLPFYSWLPDA-MEAPTPASAYLhAASMVKVGVYIFARAIQSMGPIPHVIGYVGAVMAIVTL 283
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 270 VMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQ---TPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLTR 346
Cdd:PRK06525 284 LYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAilgSRLALEGSIAYIFNHAFAKSLFFLVAGALSYSCGTRLLPRLR 363
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 110433064 347 GLQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIILTGLNML 401
Cdd:PRK06525 364 GVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIFAAGFELSVEYWILLPAMVL 418
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
16-392 3.09e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 68.30  E-value: 3.09e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  16 WYSTNPMVWINITLHSL-TISLMSLSFLNQTD-----NNSNNFSPTFFSDPLSSPLLALTMWLLPLTIMASQHHLSKEPW 89
Cdd:PRK06589  33 DSFIRNFLLITISIFFFgNILLIDLLFLKGIRaqfelMDFGNYSIGLHLEPLGLIFLLLIGFLWICALLYTPKYLAINNI 112
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  90 ERKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLVIITrWGNQTERLNAGLYFLFYTLIGSLPL-LVALSFIQ 168
Cdd:PRK06589 113 DSSSRFLFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLIG-HTRNNISLSGGYKYLKILMISALLLfLPAVILIY 191
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 169 NHMGTLNlfmmtYWSEELPNSWSSNLTWMACIMAfMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITM 248
Cdd:PRK06589 192 TKTGNLD-----FVSGGLFSKNQSIILLLMFIYG-IAKTAIFPVHSWLPAAMVAHYPVSALLHAVIVVKTGLFCIYKILL 265
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 249 I---LNPLTKF--MAYPFLMLCLWGMVMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTS 323
Cdd:PRK06589 266 YifgLSYLQRIfaEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLVSHSFAK 345
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 110433064 324 SMLFCLANSNYERIHNRTMLLTRGLQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMT 392
Cdd:PRK06589 346 ICLFYSMGSIYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPW 414
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
6-338 3.42e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 68.05  E-value: 3.42e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064   6 IPTIMLLPMTWYSTNPMVWINITLHSLTISLMSLSFLNQTDNnsnnFSPTFFSDPLSSPLLALTMWLLPLTIMASqhhls 85
Cdd:PRK07234  17 FAIYLLPKLDRNLALGMAIVSAVYALGLVASMVPLELTLLDN----FGVTLRADALSGYFILTNALVTLAVIFYC----- 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  86 kepWERKK--YFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLVIITrWGNQTERLNAGLYFLFYTLIGSLPLL-- 161
Cdd:PRK07234  88 ---WESAKtrFFYAQLLILHGSVNAAFVCADLISLYVALEVLSIATFLLVA-YPRTDRAIWVGLRYLFYSNVAMLFYLig 163
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 162 VALSFIQNHmgtlnlfmmTYWSEELPNSWSSNLTWMAciMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGY 241
Cdd:PRK07234 164 AVLVYQANG---------TFAFSGLATADPEAFALIA--LGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVF 232
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 242 GMMRITMILNPLTKFMAYPFLMLCLWGmvmtSLICLRQTDLKSLIAYSSVSHMALVIVAILIqtpwsfmgATALMIAHGL 321
Cdd:PRK07234 233 PLVRCALDVPGLDLIVRIFGVGTALLG----VLFALLEKDLKRMLAFSTISQLGFILAAPLV--------GGLYALAHGL 300
                        330
                 ....*....|....*..
gi 110433064 322 TSSMLFCLANSNYERIH 338
Cdd:PRK07234 301 VKSTLFLCAGALPSRNF 317
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
115-424 4.51e-12

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 67.87  E-value: 4.51e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 115 LIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLfmmTYWSEELPNSWSSNL 194
Cdd:COG1009  133 LLLLFVFWELVGLCSYLLIGFWYEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNF---SELLAAAPTILSSPL 209
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 195 TWMACIMAF---MIKMPLYGLHLWLPKAhVEAPIAGSMIL-AAILLKLGGYGMMRitmiLNPLtkFMAYPFLMLCL---- 266
Cdd:COG1009  210 LTLILLLLLlgaFGKSAQFPLHFWLPDA-MEGPTPVSALLhAATMVKAGVYLLAR----LSPL--FALSPVWLTVVaiig 282
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 267 -WGMVMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQtpwSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLT 345
Cdd:COG1009  283 aITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVG---AYVAALFHLLTHAFFKALLFLGAGSVIHATGTRDIRKM 359
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 346 RGLQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIILTGLNML---ITATYSLYMLAMT----QRGK 418
Cdd:COG1009  360 GGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAALEAGGLGPLLLAVALLgafLTAFYSFRLFFLVffgkPRPK 439

                 ....*.
gi 110433064 419 SLYHMH 424
Cdd:COG1009  440 TPKHPH 445
PRK12650 PRK12650
DUF4040 family protein;
66-330 5.41e-12

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 68.15  E-value: 5.41e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  66 LALTMWLLPLTIMA-----SQHHLSKEPWERKKYFLFTLISLQLFLIMTftATELIMFYILFESTLIPTLVIITRWGNQT 140
Cdd:PRK12650  80 LSLFFALLALVIGAvvfiySARYLPRKKGNTSFYLLMTAFMAAMLLLVL--ADDVVVLFVAWELVSLASFFLIARSGSGG 157
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 141 ErlNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLfmmtywSEELPN-SWSSNLTWMACI-----MAFMIKMPLYGLHL 214
Cdd:PRK12650 158 E--AGSIRTLILTFFGGLTLLAAVAIAATQTGTTSL------SGILHSdVWAEKPGLTTVVavliaVAAFTKSAQFPFHF 229
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 215 WLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKFMaypfLMLCLWGM---VMTSLICLRQTDLKSLIAYSSV 291
Cdd:PRK12650 230 WLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDVAVWN----WLLIIVGMitaLMGAVFAVQKTDLKKLTAYSTV 305
                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 110433064 292 SHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLA 330
Cdd:PRK12650 306 SQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLI 344
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
119-397 1.08e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 66.68  E-value: 1.08e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 119 YILFESTLIPTLVIITRwGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSEELPNSWSSNLTWMA 198
Cdd:PRK12662 136 YVFLEISSISSYVLVAM-GRDKKALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLNMGDMFLIIQDLPTNRAIQIGVLF 214
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 199 CIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITM-ILNPLTKFMAYPF----LMLCLWGMVMTS 273
Cdd:PRK12662 215 IMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVYdVFKANFVFTTLPFnnvfMILAALAIVFGS 294
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 274 LICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLTRGLQSLLP 353
Cdd:PRK12662 295 VLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHFGTTKLEDCLNLWKSMP 374
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 110433064 354 LMSTWWLLASLTNLALPPSINLIGELFI---TMATFSWSNMTIILTG 397
Cdd:PRK12662 375 KITLAFVLLSLSLIGMPPTSGFVAKWYIldaFIKSNAWIGLVVLLVG 421
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
145-371 1.19e-11

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 66.84  E-value: 1.19e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 145 AGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMtywSEELPNSWSSNLTWMACIMAFMIKMPLYGLHLWLPKAHVEAP 224
Cdd:PRK06521 165 AGFLYLLMAHAGALAILLAFGLLARESGSYDFAAM---RAAHLSPFWASLVFLLALFGFGAKAGLVPLHVWLPRAHPAAP 241
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 225 IAGSMILAAILLKLGGYGMMRITM-ILNPLTKFMAYPFLMLCLWGMVMTSLICLRQTDLKSLIAYSSVSHMALVIVA--- 300
Cdd:PRK06521 242 SHVSALMSGVMLKVAIYGILRVVFdLLGAPGWWWGVLVLALGAISAVLGVLYALAEHDLKRLLAYSTIENIGIIFVGlgl 321
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 110433064 301 --ILIQTPWSFMGATALMIA------HGLTSSMLFCLANSNYERIHNRTMLLTRGLQSLLPLMSTWWLLASLTNLALPP 371
Cdd:PRK06521 322 amVFIAYGMPLLAALALTAAlyhllnHALFKSLLFLGAGAVLHATGTRDMEKLGGLIRRMPWTAWAFLIGCLAISALPP 400
PRK12646 PRK12646
DUF4040 family protein;
95-418 1.60e-11

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 66.70  E-value: 1.60e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  95 FLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTL 174
Cdd:PRK12646 112 FYFYLTLFMFSMIGIVLSDNTILMYVFWELTSVSSFLLISYWYNNGDSQFGAIQSFMITVFGGLALLVGFIMLYIMTGTN 191
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 175 NLFMMTYWSEELPNS-WSSNLTWMACIMAFMiKMPLYGLHLWLPKAhVEAPIAGSMIL-AAILLKLGGYGMMRITMILNp 252
Cdd:PRK12646 192 NITEILGQADHIKNHgLFIPMIFMFLLGAFT-KSAQFPFHIWLPRA-MAAPTPVSAYLhSATMVKAGIFLLFRFTPLLG- 268
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 253 LTKFMAYPFLMLCLWGMVMTSLICLRQTDLKSLIAYSSVSHMALVIVAI-----LIQTPWSFMGATALMIA--------- 318
Cdd:PRK12646 269 LSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAMVgigggYAQHQQDAIASIYVFVLfaalfhlmn 348
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 319 HGLTSSMLFCLANSNYERIHNRTMLLTRGLQSLLPLMSTWWLLASLTnLALPPSIN--LIGELFIT-------MATFSWS 389
Cdd:PRK12646 349 HAIFKCALFMGVGIIDHEAGTRDIRILSGMRQLFPKMNLVMTIAALS-MAGVPFLNgfLSKEMFLDaltqtgqLSQFSLI 427
                        330       340       350
                 ....*....|....*....|....*....|.
gi 110433064 390 NMTIILT--GLNMLITATYSLYMLAMTQRGK 418
Cdd:PRK12646 428 SMIIIVFigVIASIFTFTYALYMVKEVFWGK 458
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
9-323 1.35e-10

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 63.21  E-value: 1.35e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064   9 IMLLPMTWYSTNPMVWINITLHSLTISLMSLsFLNQTDNNSNNFSPTFFSDPLSSPLLALTMWLLPLTIMASQHHLSKEP 88
Cdd:COG1007   20 LLLLDLFLPRRSRRLLAGLALLGLLLALALL-LLALGGGTGTAFGGMFVVDGFALFFKLLILLAALLVLLLSRDYLERRG 98
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  89 WERKKYFLFTLISLqLFLIMTFTATELIMFYILFESTLIPTLVIITRWGNQTERLNAGL-YFLFYTLIGSLpLLVALSFI 167
Cdd:COG1007   99 LLRGEFYALLLFAT-LGMMLMASANDLLTLFLGLELLSLSLYVLVAFRRDDRRSSEAALkYFLLGALSSGF-LLYGISLL 176
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 168 QNHMGTLNLFMMTYWSEELPNSwsSNLTWMACIM---AFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILlKLGGYGM- 243
Cdd:COG1007  177 YGATGSLNLAGIAAALAAGGAN--SPLLLLGLVLvlaGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAP-KIAAFAAl 253
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 244 MRITMI-LNPLTKFMAYPFLMLCLWGMVMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLT 322
Cdd:COG1007  254 LRLLVEaFPGLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAYLFM 333

                 .
gi 110433064 323 S 323
Cdd:COG1007  334 N 334
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
155-398 2.43e-10

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 62.54  E-value: 2.43e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 155 IGSLPLLVALSFIQNHMGTLNLFMMTYWSEELPnswSSNLTWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAI 234
Cdd:PRK08042 145 LGTLLLAIACWLLWQRYGTLDLRLLDMRMQQLP---LGSDIWLLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTV 221
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 235 LLKLGGYGMMRITMILNPLTKFMAYPFLMLCLWGMVMTSLICLRQTDLKSLIAYSSVSHMALV-------IVAILIQTP- 306
Cdd:PRK08042 222 VMKIGLLGILTLSLLGGNAPLWWGVALLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIIllglgagVTGIALEQPa 301
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 307 ---WSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLTRGLQSLLPLMSTWWLLASLTNLALPPSINLIGELFITM 383
Cdd:PRK08042 302 liaLGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQ 381
                        250
                 ....*....|....*
gi 110433064 384 ATFSWSNMTIILTGL 398
Cdd:PRK08042 382 SFFKLSNSGAFVARL 396
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
11-408 1.23e-09

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 60.35  E-value: 1.23e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  11 LLPMTWYSTNPMVWINITLHSLTIsLMSLSFLNQTDNNS------NNFSPTF---FSDPLSSPLLALTMWLLPLTIMAsq 81
Cdd:PRK12663  19 VLVFLRNRDRLQRYLAIGTLTILT-LISLALLIYVQRHGpitldfGGWLPPFgiqFTGDSLSALMVTTASFVATAIMA-- 95
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  82 HHLSKEPWERKKYFLFTLISLQLF-LIMTFTATELIMFYILFESTLIPTLVIITrWGNQTERLNAGLYFLFYTLIGSLPL 160
Cdd:PRK12663  96 YGFGDIEHSGRRYGFPPFILLLMAgVIGSFLTGDLFNLYVWFEVMLIASFVLIT-LGQEREQLRGAIKYVVLNLIGSWLF 174
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 161 LVALSFIQNHMGTLNLFMMTYWSEELPNSWSSNLTWMACIMAFMIKMPLYGLHlWLPKAHVEAPIAGSMILAAILLKLGG 240
Cdd:PRK12663 175 LLGIGLLYGTFGTLNMAHIAMRLNDMGDTATLTTIALLFLLAFGMKAALFPFM-WLPAAYHTPNTEVAALFAALLTKVGI 253
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 241 YGMMRITMILNPLTKFMAYPFL--MLCLwGMVMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIA 318
Cdd:PRK12663 254 YALIRVFTLLFPQERELLHPLLatMAAI-TMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVH 332
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 319 HGLTSSMLFCLANSNYERIHNRTMLLTRGLQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIILTGL 398
Cdd:PRK12663 333 DMVVKTALFLIAGSLVRLTGYRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALML 412
                        410
                 ....*....|
gi 110433064 399 NMLITATYSL 408
Cdd:PRK12663 413 ITSLITMYSL 422
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
75-371 2.33e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 59.34  E-value: 2.33e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  75 LTIMASQHHLSKEPWERKKYFLFTLISLQLFLIMTftATELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTL 154
Cdd:PRK08376 105 LAVLYSISYMKHDTGLDKYYTLILLLELGMLGMAI--TGDLFNFFVFLEIMSIASYALVAFRNDTWEAIEAGIKYMFVGS 182
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 155 IGSLPLLVALSFIQNHMGTLNLFMMTYWSEELPnSWSSNLTWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAI 234
Cdd:PRK08376 183 LASSMVLLGIALLYGQYGTLNMAYLAVKMSENP-TVVAKIALALFIAGLAMKSGAVPVHMWLPDAYPAAPSSISAMLLVI 261
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 235 llKLGG-YGMMRITMILNPLT---KFMAYPFLMLCLWGMVMTSLICLRQTDLKSLIAYSSVS---HMAL---VIVAILIQ 304
Cdd:PRK08376 262 --KQAGlYALARVLFSIYGPAinlATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSqigYMLLglgVGLAALGD 339
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 110433064 305 TPWSFMGATAL------MIAHGLTSSMLFCLANSNYERIHNRTMLLTRGLQSLLPLMSTWWLLASLTNLALPP 371
Cdd:PRK08376 340 PAMASYGEIALaggiyhIVNHALYKALLFLTAGAVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPP 412
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
111-327 2.00e-08

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 56.86  E-value: 2.00e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 111 TATELIMFYILFESTLIPTLVIItrwGNQTERLN---AGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLfmmtywSEELP 187
Cdd:PRK12644 124 TSDNLLLLYVFWELTTVLSFLLI---GHYAERAAsrrAALQALLVTTAGGLAMLVGIIILGQAAGTYRL------SELLA 194
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 188 NSWSSNLTWMA--CIMA-FMIKMPLYGLHLWLPKAhVEAPIAGSMIL-AAILLKLGGYGMMRITMILNPLTkFMAYPFLM 263
Cdd:PRK12644 195 DPPTGPAVSVAvvLILVgALSKSAIVPFHFWLPGA-MAAPTPVSAYLhAAAMVKAGIYLVARLAPGFADVP-VWRPTVLV 272
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 110433064 264 LCLWGMVMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLF 327
Cdd:PRK12644 273 LGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLAMLLAHALFKAALF 336
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
129-327 7.20e-08

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 54.90  E-value: 7.20e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 129 TLVIitrWGNQTER-LNAGL-YFLFYTLIGSLpLLVALSFIQNHMGTLnLFMMTYWSEELPnswssnlTWMACImAFMIK 206
Cdd:PRK12668 130 TFLV---WARGTKAaVRAGFrYLLVHVLGGVL-LLAGILLHYAETGSF-AFGAIAGLGGTA-------AWLILI-GFGVN 196
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 207 MPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRI---TMILNPLTKFMA-YPFLMLCLwgmvmtsliclrQTDL 282
Cdd:PRK12668 197 AAFPPLHAWLPDAYPEATVTGSVFLSAFTTKTAVYALARAfpgTELLIYIGAAMAvYGVFFALL------------ENDL 264
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 110433064 283 KSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLF 327
Cdd:PRK12668 265 RRLLSYHIVSQVGYMVAGIGIGTALAINGAVAHAFNHILYKGLLF 309
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
39-408 1.73e-06

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 50.35  E-value: 1.73e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  39 LSFLNQTDNNSNNFSPTFFSDPLSSPLLALTMWLLPLTIMASQHHLSKEPweRKKYFLFTLISLQLFLIMTFTATELIMF 118
Cdd:MTH00208  86 ISLSNWLSNTLFNFSLSFIFDFYFILFFSVALFVTWSIIEFSHYYMSNDP--NKNAFFRLLIIFLLNMLILTSSNNLFLL 163
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 119 YILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSEelPNSWSSNLTWMA 198
Cdd:MTH00208 164 FIGWEGVGFLSFLLISWWTTRNDANSSALQAVIYNRIGDIGIILFLSLSLINFNSWNLNEILSLNN--SNSFLINILLFG 241
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 199 CIMAFMIKMPLYGLHLWLPKAhVEAPIAGS-------MILAAILLklggygMMRITMILNPLTKFmaypfLMLCLWGMVM 271
Cdd:MTH00208 242 ILLAAAGKSAQFGLHPWLPAA-MEGPTPVSallhsstMVVAGVFL------LIRTSPLISNSPWF-----LSLCLILGSL 309
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 272 TSL----ICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSfmgATALMIAHGLTSSMLFCLANSnyeRIHN-------R 340
Cdd:MTH00208 310 TALfaasTAISQHDIKKIIAYSTTSQLGLMVVAIGLNQPNL---ALFHICTHAFFKAMLFLCSGS---IIHSlnneqdlR 383
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 110433064 341 TMlltRGLQSLLPLMSTWWLLASLTNLALP-----PSINLIGELFITmatfSWSN-MTIILTGLNMLITATYSL 408
Cdd:MTH00208 384 KM---GGLSFLLPVTSSCIILGSLALMGTPflagfYSKDLILEAGLA----SISNlLSIILALIATLLTAVYSF 450
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
1-323 2.38e-06

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 49.82  E-value: 2.38e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064   1 MLKIIIPTIMLLPMTWYSTNPMVWINITLHSLTISLMSLSFLNQTDNNSNNFSPTFFSDPLSSPLLALTMWLLPLTIMAS 80
Cdd:PRK05777  14 ELILLGAAVVLLLIDAFVRRHSRRATLAVLALLLALVALLFVLGAAGGGTAFGGMLVVDGFALFLKGLILLASLLALLLA 93
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  81 QHHLSKEpwERKKYFLFTLISLQLFLIMTFtATELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPL 160
Cdd:PRK05777  94 RPYLEDR--GRGEFYLLVLFALLGMMVMVS-ANDLLTLFLGLELLSLPLYALAALRRDRRRSLEAAIKYFVLGALASGFL 170
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 161 LVALSFIQNHMGTLNLFMMTywseELPNSWSSNLTWMACIMAFMI-----KMPLYGLHLWLPKAHVEAPIAGSMILAAIL 235
Cdd:PRK05777 171 LYGMSLLYGATGSLSFAGIA----KALADGSGNSLLLLFGLVFLLvglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAP 246
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 236 lKLGGYGM-MRI-TMILNPLTKFMAYPFLMLCLWGMVMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGAT 313
Cdd:PRK05777 247 -KIAAFAVlLRLlVVAFGGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVL 325
                        330
                 ....*....|
gi 110433064 314 ALMIAHGLTS 323
Cdd:PRK05777 326 FYLLAYLFMT 335
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
59-393 4.17e-06

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 49.19  E-value: 4.17e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  59 DPLSSPLLALTMWLLPLTIMASQHHLSKEPweRKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLVIITRWGN 138
Cdd:MTH00032  79 DTLSVTMLLVISSISTLVHIYSTSYMSDDP--HVPRFLCYLSLFTFLMMVLVTSDNYLQLFIGWEGVGVCSYLLVAFWTT 156
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 139 QTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMM---TYWSEELPNSWSSNLTWMACIMAFMI---------- 205
Cdd:MTH00032 157 RIQANKAAIKAIVVNRVGDVGVILGMVLIYKTIGSLDFLTFnggSVGSGIMDRGYYGGGAYESPLAPFAIigillligci 236
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 206 -KMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITmilnPLTKFMAYPFLMLCLWGMV---MTSLICLRQTD 281
Cdd:MTH00032 237 gKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSF----PLFEKAPLTLLIITIFGALtafFAATVGLVQND 312
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 282 LKSLIAYSSVSHMALVIVAILIQTpwSFMGATALMIAHGLTSSMLFCLANS--NYERIHNRTMLLTRGLQSLLPLMSTWW 359
Cdd:MTH00032 313 LKKVIAYSTCSQLGYMVLIIGIEG--SHNVGLFHLVNHAFFKALLFLSAGSviHSTTVDEQDMRKMGGLIHSIPFTYTMM 390
                        330       340       350
                 ....*....|....*....|....*....|....
gi 110433064 360 LLASLTNLALPPSINLIGELFITMATFSWSNMTI 393
Cdd:MTH00032 391 LIGSFSIMGLPYLTGFYSKDLILELTYSGRNMGI 424
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
93-371 4.69e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 49.06  E-value: 4.69e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  93 KYFLFTLISLQLFLIMTFTATELIMFyILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMG 172
Cdd:PRK12649 112 RYYQYLLLFMGSMIGMVFSGNTIQLF-IFWELTSITSFMLIGYWRHRPESVYGATKSLLITAGGGLFMFAGFLLLHVITG 190
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 173 TLNLFMMTYWSEELPNSWSSNLTWMACIMAFM---IKMPLYGLHLWLPKAhVEAPIAGSMIL-AAILLKLGGYGMMRITM 248
Cdd:PRK12649 191 TYDIATILQDSELIENIKGHPLFLITLILIFIgaaAKSAQGPFYIWLPNA-MEAPTPVSAFLhSATMVKAGVYLVARIHP 269
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 249 ILNPLTKFmaypFLMLCLWG---MVMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTP----WSFMGATALMIAHGL 321
Cdd:PRK12649 270 IFSGTEAW----FILVSGTGmitMVLAGFLAFRQTDIKAILAYSTISQLAYLMTMYGYTTYhepgLGVAAATFHLLNHAT 345
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 110433064 322 TSSMLFCLANSNYERIHNRTMLLTRGLQSLLPLMSTWWLLASLTNLALPP 371
Cdd:PRK12649 346 FKACLFLVAGIVAHEAATRDIRKLGGLRKEMPITFIVASIAALAMAGIPP 395
PRK12666 PRK12666
putative monovalent cation/H+ antiporter subunit D; Reviewed
137-330 6.87e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237166 [Multi-domain]  Cd Length: 528  Bit Score: 48.31  E-value: 6.87e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 137 GNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNlfmMTYWSEELPNSWSSNLTWM---ACIM--AFMIKMPLYG 211
Cdd:PRK12666 152 GSGRARVRAGLHYVAINLVASSLFLIGVGLIYGVTGTLN---MADLAQRIAQLPAADRALLeagAALLlvVFLIKAAMWP 228
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 212 LHLWLPKAHVEA--PIAGsmiLAAILLKLGGYGMMRI-TMILNPLTKFMAYPFLMLCLWGMVMTSLI----CLRQTDLKS 284
Cdd:PRK12666 229 LNFWLPPAYAAAsaPVAA---LFAIMTKVGIYAILRLsTLLFGPEAGASAGFGQDWLLPGGLATLAFgaigVLAAQRLRR 305
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 110433064 285 LIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLA 330
Cdd:PRK12666 306 LAAYLVLVSSGTLLAAIGLGNPAATAAALYYLVHSTLAAAALFLLA 351
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
155-371 1.48e-04

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 44.13  E-value: 1.48e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 155 IGSLPLLVALSFIQNHMGTLNLFMMTYWSEELP-NSWSSNLTWMACIMAFMIKMPLYGLHLWLPKAhVEAPIAGSMILAA 233
Cdd:PRK07390 182 VGDLLLLMGVVALSPLAGTLNFSDLAAWAATANlDPLTATLLGLALIAGPTGKCAQFPLHLWLDEA-MEGPNPASILRNS 260
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 234 ILLKLGGYGMMRITMI--LNPLTKFmaypfLMLCLWGM--VMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPwsf 309
Cdd:PRK07390 261 VVVATGAWVLIKLQPVlaLSPVALT-----VLIVIGTVtaIGASLVAIAQIDIKRALSYSTSAYLGLVFIAVGLQQP--- 332
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 110433064 310 MGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLTRGLQSLLPLMSTWWLLASLTNLALPP 371
Cdd:PRK07390 333 DIALLLLLTHAIAKALLFMSVGSIILTTITQDLTELGGLWSRMPATTLAFLVGSAGLVALLP 394
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
112-327 2.92e-04

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 42.71  E-value: 2.92e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 112 ATELIMFYILFESTLIPTLVIITRWGNQTERLNAGL-YFLFYTLIGSLPLL-VALSFIQNHMGTLNLFMMTYWSEELPNS 189
Cdd:MTH00196  12 SSNWLSVYLAIELQTLSLFILIAQNRGSGYSAEAGLkYFVLGALSSGLFLFgCALLCGTTGGLHLSYINLVLNSGQSFSS 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 190 WSSNLTWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAaILLKLGgygMMRITMILNPLTKFmaypFLMLCLWGM 269
Cdd:MTH00196  92 VSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLA-IVPKLG---IFSILVSIGLNVNI----LLIGGLFSL 163
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 110433064 270 VMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLF 327
Cdd:MTH00196 164 FVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFESIQASLVYLFIYIIMSICVF 221
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
96-414 3.63e-04

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 43.14  E-value: 3.63e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  96 LFTLislqlFLIMTFTATELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLN 175
Cdd:MTH00020 119 LFTF-----LMVVLVTSDNYLQLFIGWEGVGLCSYLLINFWLTRIEANKAAIKAMLVNRVGDIGLLLAMFLLWDRFGSLD 193
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 176 ---LFMMtywseeLPNSWSSNLTWMaCIMAF---MIKMPLYGLHLWLPKAhVEAPIAGS-MILAAILLKLGGYGMMR--- 245
Cdd:MTH00020 194 fssVFNM------VVSAPSSDITLI-CLFLFigaVGKSAQLGLHTWLPDA-MEGPTPVSaLIHAATMVTAGVFLLIRssp 265
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 246 ----------ITMILNPLTKFMAypflmlclwgmvmtSLICLRQTDLKSLIAYSSVSHMALVIVAILIQtpwSFMGATAL 315
Cdd:MTH00020 266 lfeqaplaliIVTIVGSLTVFFA--------------ATVGLVQNDLKKVIAYSTCSQLGYMVVACGLS---HYSISLFH 328
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 316 MIAHGLTSSMLFCLANSNYERIHN-RTMLLTRGLQSLLPLMSTWWLLASLTNLALP-----PSINLIGELFITMATFSWS 389
Cdd:MTH00020 329 LMNHAFFKALLFLSAGSVIHALSDeQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPyltgfYSKDLILELAFGQYYLIFA 408
                        330       340
                 ....*....|....*....|....*
gi 110433064 390 NMtiiLTGLNMLITATYSLYMLAMT 414
Cdd:MTH00020 409 YW---LGCFSALLTAFYSIRLIYLT 430
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
92-364 5.67e-04

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 42.47  E-value: 5.67e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064  92 KKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLVIITRWGNQTErlnAGLYFLFYTLIGSLPLLVALSFIQNHM 171
Cdd:PRK06459  71 GKWLSSLYILTILGMAIVLTSDNYLLFLAGWEIMTIPSYVAIALTKKNKR---PAFVFMAFGELSTVLILAGFAWAFIIS 147
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 172 GTLNLfmmtywseelpNSWSSNLTWMACIMAFMIKMPLYGLHL--WLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMI 249
Cdd:PRK06459 148 GTTNF-----------SYLPSPVPLILASFGFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTLMGVYGILKMTIL 216
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 250 LNPL-TKFMAYPFLMLCLWGMVMTSLICLRQTDLKSLIAYSSVSHMALVIVAI--------LIQTPWSFMGATALM--IA 318
Cdd:PRK06459 217 TQTIpIGYFGLTILAIGAFSILFGALYAYVSENVKGLLAFSTIENNGAILVALglymvtkqLITSIEHFSLITVILysFA 296
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 110433064 319 HGLTSSMLFC------------LANSNYERIHNRTMLLTRGLQSLLPL---MSTWWLLASL 364
Cdd:PRK06459 297 HSVAKTGLFLssglqekqsitySKKIRNRWIELGLTLLASSLSGLLPNiggVASWLLLESL 357
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
199-371 7.59e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 38.85  E-value: 7.59e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 199 CIMAF---MIKMPLYGLHLWLPKAhVEAPIAGS-MILAAILLKLGGYGMMRitmiLNPLtkFMAYPFLMLCL-WGMVMTS 273
Cdd:PRK07376 230 CILVFlgpMAKSAQFPLHVWLPDA-MEGPTPISaLIHAATMVAAGVFLVAR----MYPV--FEQFPAVMTVIaWTGAITA 302
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110433064 274 L----ICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSfmGATALMiAHGLTSSMLFCLANS---------NYERIHNR 340
Cdd:PRK07376 303 FlgasIALTQNDIKKGLAYSTISQLGYMVMAMGCGAYSA--GLFHLM-THAYFKAMLFLGSGSvihgmeevvGHDPVLAQ 379
                        170       180       190
                 ....*....|....*....|....*....|.
gi 110433064 341 TMLLTRGLQSLLPLMSTWWLLASLTNLALPP 371
Cdd:PRK07376 380 DMRLMGGLRKYMPITAITFLIGCLAISGIPP 410
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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