NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|114224241|gb|ABI55045|]
View 

NADH dehydrogenase subunit 4 (mitochondrion) [Avahi occidentalis]

Protein Classification

NADH dehydrogenase subunit 4( domain architecture ID 11475903)

NADH dehydrogenase subunit 4 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
1-459 0e+00

NADH dehydrogenase subunit 4; Provisional


:

Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 747.87  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241   1 MLKIIIPTIMLFPVTWYSNNSMIWINTTSHSLMISLMGLFLLNHPSNNSNNFSLNFFSDPLSSPLLMLTMWLLPLMIMAS 80
Cdd:MTH00110   1 MLKIIIPTIMLIPLTWLSKNNMIWINTTTYSLLISLISLLLLNQPNDNSLNFSLLFFSDSLSTPLLILTTWLLPLMLMAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  81 QHHLAKEPCFRKKSYLSMLITLQMFLIMTFTATELILFYILFEATLIPTLIIITRWGNQTERLNAGMYFLFYTLTGSLPL 160
Cdd:MTH00110  81 QHHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 161 LVALIYLQSSMGSLNLLTINLWLKELPNSWSTNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGG 240
Cdd:MTH00110 161 LVALLYIQNNLGSLNFLLLQLWAQPLPNSWSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 241 YGMMRITMILDPTTKSMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILVQTPLGFMGATALMIAHG 320
Cdd:MTH00110 241 YGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 321 LTSSMLFCLANSNYERIHSRTMLMARGLQTLLPLMTTWWLLASLNNLALPPSINLIGELLVTITSFSWSNITVILIGLNM 400
Cdd:MTH00110 321 LTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNM 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 114224241 401 LITALYSLYMLITTQRGKLTYYLHNLNPSLTRENTLMSMHMLPLLFLTLNPKIILGPTF 459
Cdd:MTH00110 401 LITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGPTY 459
 
Name Accession Description Interval E-value
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
1-459 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 747.87  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241   1 MLKIIIPTIMLFPVTWYSNNSMIWINTTSHSLMISLMGLFLLNHPSNNSNNFSLNFFSDPLSSPLLMLTMWLLPLMIMAS 80
Cdd:MTH00110   1 MLKIIIPTIMLIPLTWLSKNNMIWINTTTYSLLISLISLLLLNQPNDNSLNFSLLFFSDSLSTPLLILTTWLLPLMLMAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  81 QHHLAKEPCFRKKSYLSMLITLQMFLIMTFTATELILFYILFEATLIPTLIIITRWGNQTERLNAGMYFLFYTLTGSLPL 160
Cdd:MTH00110  81 QHHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 161 LVALIYLQSSMGSLNLLTINLWLKELPNSWSTNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGG 240
Cdd:MTH00110 161 LVALLYIQNNLGSLNFLLLQLWAQPLPNSWSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 241 YGMMRITMILDPTTKSMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILVQTPLGFMGATALMIAHG 320
Cdd:MTH00110 241 YGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 321 LTSSMLFCLANSNYERIHSRTMLMARGLQTLLPLMTTWWLLASLNNLALPPSINLIGELLVTITSFSWSNITVILIGLNM 400
Cdd:MTH00110 321 LTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNM 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 114224241 401 LITALYSLYMLITTQRGKLTYYLHNLNPSLTRENTLMSMHMLPLLFLTLNPKIILGPTF 459
Cdd:MTH00110 401 LITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGPTY 459
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
59-458 5.58e-78

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 250.77  E-value: 5.58e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  59 DPLSSPLLMLTMWLLPLMIMASQHHLAKepcfRKKSYLSMLITLQMFLIMTFTATELILFYILFEATLIPTLIIITRWGN 138
Cdd:COG1008   81 DGISLPLVLLTALLTPLAILASWNEIKK----RPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLIGIWGG 156
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 139 QtERLNAGMYFLFYTLTGSLPLLVALIYL--QSSMGSLNLLTinlwLKELPNSWST-NLLWMACIMAFMVKMPLYGLHLW 215
Cdd:COG1008  157 E-RRIYAAIKFFLYTLAGSLLMLVAILALyfLAGALTFDIAE----LAAAPLPLTAqLLLFLAFFIAFAVKVPMFPFHTW 231
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 216 LPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMILDP-TTKSMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294
Cdd:COG1008  232 LPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFALPLFPeASAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHM 311
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 295 ALVIVAILVQTPLGFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARGLQTLLPLMTTWWLLASLNNLALPPSIN 374
Cdd:COG1008  312 GFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSG 391
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 375 LIGELLVTITSFSWSNITVILIGLNMLITALYSLYMLITTQRGKLTYYLHNLNPSLTRENTLMSMHMLPLLFLTLNPKII 454
Cdd:COG1008  392 FVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMYQRVFFGPLKEELAELPDLNPRELAVLAPLAALILLLGLYPQPL 471

                 ....
gi 114224241 455 LGPT 458
Cdd:COG1008  472 LDLI 475
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
59-458 4.14e-75

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 243.31  E-value: 4.14e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241   59 DPLSSPLLMLTMWLLPLMIMASQHHLAKepcfRKKSYLSMLITLQMFLIMTFTATELILFYILFEATLIPTLIIITRWGN 138
Cdd:TIGR01972  76 DGISLLLVLLTALLTLLAILASWESIQK----RVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGG 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  139 QTeRLNAGMYFLFYTLTGSLPLLVALIYLQ-SSMGSLNLLTINLwlKELPNSWSTnLLWMACIMAFMVKMPLYGLHLWLP 217
Cdd:TIGR01972 152 PN-RIYAAMKFFLYTLAGSLLMLLAILGLYfLGGGTFDLLELLN--LPLPFGVQT-WLFLAFFIAFAVKVPLFPLHTWLP 227
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  218 KAHVEAPIAGSMVLAAVLLKLGGYGMMRITMILDP-TTKSMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 296
Cdd:TIGR01972 228 DAHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGF 307
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  297 VIVAILVQTPLGFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARGLQTLLPLMTTWWLLASLNNLALPPSINLI 376
Cdd:TIGR01972 308 VLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFV 387
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  377 GELLVTITSFSWSNITVILIGLNMLITALYSLYMLITTQRGKLT----YYLHNLNPsltRENTLMSMHMLPLLFLTLNPK 452
Cdd:TIGR01972 388 GEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLYKRVFFGELSnpevAEFPDLNG---REIAVLAPLVVLILFLGLYPN 464

                  ....*.
gi 114224241  453 IILGPT 458
Cdd:TIGR01972 465 PLLDLT 470
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
112-398 5.75e-63

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 205.62  E-value: 5.75e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  112 ATELILFYILFEATLIPTLIIITRWGNQTERLNAGMYFLFYTLTGSLPLLVALIYLQSSMGSLNLLTINLWLKELPNSWS 191
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNSSG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  192 TNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMILDPTTKSMAYPFLMLCLWGMIM 271
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  272 TSSICLRQTDLKSLIAYSSVSHMALVIVAILVQTPLGFMGATALMIAHGLTSSMLFCLANS-NYERIHSRTMLMARGLQT 350
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSvIYRRVHTRNIRDYGGLAK 240
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 114224241  351 LLPLMTTWWLLASLNNLALPPSINLIGELLVTITSFSWSNITVILIGL 398
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGV 288
 
Name Accession Description Interval E-value
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
1-459 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 747.87  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241   1 MLKIIIPTIMLFPVTWYSNNSMIWINTTSHSLMISLMGLFLLNHPSNNSNNFSLNFFSDPLSSPLLMLTMWLLPLMIMAS 80
Cdd:MTH00110   1 MLKIIIPTIMLIPLTWLSKNNMIWINTTTYSLLISLISLLLLNQPNDNSLNFSLLFFSDSLSTPLLILTTWLLPLMLMAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  81 QHHLAKEPCFRKKSYLSMLITLQMFLIMTFTATELILFYILFEATLIPTLIIITRWGNQTERLNAGMYFLFYTLTGSLPL 160
Cdd:MTH00110  81 QHHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 161 LVALIYLQSSMGSLNLLTINLWLKELPNSWSTNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGG 240
Cdd:MTH00110 161 LVALLYIQNNLGSLNFLLLQLWAQPLPNSWSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 241 YGMMRITMILDPTTKSMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILVQTPLGFMGATALMIAHG 320
Cdd:MTH00110 241 YGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 321 LTSSMLFCLANSNYERIHSRTMLMARGLQTLLPLMTTWWLLASLNNLALPPSINLIGELLVTITSFSWSNITVILIGLNM 400
Cdd:MTH00110 321 LTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNM 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 114224241 401 LITALYSLYMLITTQRGKLTYYLHNLNPSLTRENTLMSMHMLPLLFLTLNPKIILGPTF 459
Cdd:MTH00110 401 LITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGPTY 459
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
1-457 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 606.04  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241   1 MLKIIIPTIMLFPVTWYSNNSMIWINTTSHSLMISLMGLFLLNHPSNNSNNFSLNFFSDPLSSPLLMLTMWLLPLMIMAS 80
Cdd:MTH00124   1 MLKIILPTIMLIPTTLLSKPKFLWTNTTTYSLLIALLSLQWLKPPYYPTKNLTQWLGIDQISAPLLVLSCWLLPLMILAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  81 QHHLAKEPCFRKKSYLSMLITLQMFLIMTFTATELILFYILFEATLIPTLIIITRWGNQTERLNAGMYFLFYTLTGSLPL 160
Cdd:MTH00124  81 QNHLQHEPLQRKRTFLTTLILLQTFLILAFSATELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLISSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 161 LVALIYLQSSMGSLNLLTINLWLKELPNSWSTNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGG 240
Cdd:MTH00124 161 LIAILYLHNQTGTLSLPMLQLTHPTLTNSWTNLLLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 241 YGMMRITMILDPTTKSMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILVQTPLGFMGATALMIAHG 320
Cdd:MTH00124 241 YGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 321 LTSSMLFCLANSNYERIHSRTMLMARGLQTLLPLMTTWWLLASLNNLALPPSINLIGELLVTITSFSWSNITVILIGLNM 400
Cdd:MTH00124 321 LTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLAT 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 114224241 401 LITALYSLYMLITTQRGKLTYYLHNLNPSLTRENTLMSMHMLPLLFLTLNPKIILGP 457
Cdd:MTH00124 401 LITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
1-456 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 564.54  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241   1 MLKIIIPTIMLFPVTWYSNNSMIWINTTSHSLMISLMGLFLLNHPSNNSNNFSLNFFSDPLSSPLLMLTMWLLPLMIMAS 80
Cdd:MTH00068   1 MLKIIIPTLMLLPTTWLSPKKWLWTLTTTNSLIIAFLSLMWFNLPSETMNFTNKYFGIDQISSPLLILTCWLLPLMILAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  81 QHHLAKEPCFRKKSYLSMLITLQMFLIMTFTATELILFYILFEATLIPTLIIITRWGNQTERLNAGMYFLFYTLTGSLPL 160
Cdd:MTH00068  81 QNHLKNEPINRQRTYISMLIILQLTLILAFSATELILFYIFFEATLIPTLIIITRWGNQEERLNAGTYFLFYTLAGSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 161 LVALIYLQSSMGSLNLLTINLWLKELPNSWSTNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGG 240
Cdd:MTH00068 161 LIALLILQNSLGSLSLILLELMSPMQLMTYTNKIWWLACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 241 YGMMRITMILDPTTKSMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILVQTPLGFMGATALMIAHG 320
Cdd:MTH00068 241 YGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 321 LTSSMLFCLANSNYERIHSRTMLMARGLQTLLPLMTTWWLLASLNNLALPPSINLIGELLVTITSFSWSNITVILIGLNM 400
Cdd:MTH00068 321 LTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGLGT 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 114224241 401 LITALYSLYMLITTQRGKLTYYLHNLNPSLTRENTLMSMHMLPLLFLTLNPKIILG 456
Cdd:MTH00068 401 LITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILKPELISG 456
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
1-458 3.98e-175

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 498.71  E-value: 3.98e-175
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241   1 MLKIIIPTIMLFPVTWYSNNSMIWINTTSHSLMISLMGLFLLNHPSNN-SNNFSLNFFSDPLSSPLLMLTMWLLPLMIMA 79
Cdd:MTH00127   1 MLKILIPTLMLIPTTWLTPAKWLWTTTLAHSLLIALASLTWLKNLSETgWSSLNLYMATDPLSTPLLVLTCWLLPLMILA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  80 SQHHLAKEPCFRKKSYLSMLITLQMFLIMTFTATELILFYILFEATLIPTLIIITRWGNQTERLNAGMYFLFYTLTGSLP 159
Cdd:MTH00127  81 SQNHTAPEPINRQRMYITLLTSLQIFLILAFGATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLP 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 160 LLVALIYLQSSMGSLNLLTINLWLKELPNSWSTNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLG 239
Cdd:MTH00127 161 LLVALLLLQNSTGTLSMLTLQYSQPLQLSSWADKLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 240 GYGMMRITMILDPTTKSMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILVQTPLGFMGATALMIAH 319
Cdd:MTH00127 241 GYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAH 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 320 GLTSSMLFCLANSNYERIHSRTMLMARGLQTLLPLMTTWWLLASLNNLALPPSINLIGELLVTITSFSWSNITVILIGLN 399
Cdd:MTH00127 321 GLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGLG 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 114224241 400 MLITALYSLYMLITTQRGKLTYYLHNLNPSLTRENTLMSMHMLPLLFLTLNPKIILGPT 458
Cdd:MTH00127 401 TLITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPLLLLILKPELIWGWT 459
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
3-454 2.37e-158

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 455.55  E-value: 2.37e-158
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241   3 KIIIPTIMLFPVTWYSNNSMIWINTTSHSLMISLM-GLFLLNHPSNNSNNFSLNFFSDPLSSPLLMLTMWLLPLMIMASQ 81
Cdd:MTH00206   1 KILIPLIMLLLMTILSKKKWLWRSTTFFSFLIALLfLLWFKWSSEVGWSFSNLYLSYDPLSSPLVILSCWLLPLMFLASQ 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  82 HHLAKEPCFRKKSYLSMLITLQMFLIMTFTATELILFYILFEATLIPTLIIITRWGNQTERLNAGMYFLFYTLTGSLPLL 161
Cdd:MTH00206  81 NHMKNEPINRQRIYITLLIVLQLFLILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 162 VALIYLQSSMGSLNLLTInlwLKELPNSWSTNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGY 241
Cdd:MTH00206 161 IALLFLQNSLGSLSLYIL---YFSKLTTWNNNLWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGY 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 242 GMMRITMILDPTTKSMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILVQTPLGFMGATALMIAHGL 321
Cdd:MTH00206 238 GMMRIILILGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGL 317
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 322 TSSMLFCLANSNYERIHSRTMLMARGLQTLLPLMTTWWLLASLNNLALPPSINLIGELLVTITSFSWSNITVILIGLNML 401
Cdd:MTH00206 318 VSSALFCLANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFL 397
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|...
gi 114224241 402 ITALYSLYMLITTQRGKLTYYLHNLNPSLTRENTLMSMHMLPLLFLTLNPKII 454
Cdd:MTH00206 398 FTAIYSLYMFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPVILLILNPNLI 450
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
1-455 1.65e-145

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 423.23  E-value: 1.65e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241   1 MLKIIIPTIMLFPVTWYSNNSMIWINTTSHSLMISLMGLFLL-NHPSNNSNNFSLNFFSDPLSSPLLMLTMWLLPLMIMA 79
Cdd:MTH00044   1 MITLILLSLGIAITSWIVPKNKLWPISISQSSLISLLSLFLLnNHWSSSWHNLSLSLATDSLSSPLIILSCWLAPLSLLA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  80 SQHHLAKEPCFRKKSYLSMLITLQMFLIMTFTATELILFYILFEATLIPTLIIITRWGNQTERLNAGMYFLFYTLTGSLP 159
Cdd:MTH00044  81 SINHLSNNSPNNQRTFISLIIIILTALIITFSSLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLP 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 160 LLVALIYLQSSMGSLNLLTINLWLKELPNSWSTNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLG 239
Cdd:MTH00044 161 LLISLIAIYSSSSSLSIPLSELNWLTSLSSNSSSIWWIFCILAFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 240 GYGMMRITMILD-PTTKSMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILVQTPLGFMGATALMIA 318
Cdd:MTH00044 241 GYGLIRLINLFSlPSANNISFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIA 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 319 HGLTSSMLFCLANSNYERIHSRTMLMARGLQTLLPLMTTWWLLASLNNLALPPSINLIGELLVTITSFSWSNITVILIGL 398
Cdd:MTH00044 321 HGLVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIGL 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 114224241 399 NMLITALYSLYMLITTQRGKLTYYLHNLNPSLTRENTLMSMHMLPLLFLTLNPKIIL 455
Cdd:MTH00044 401 ATVFGAIYSLLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPLILIIINPNIIL 457
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
1-455 1.48e-114

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 343.67  E-value: 1.48e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241   1 MLKIIIPTIMLFPVTWYSNNSMIWINttshSLMISLMGLFLLNHPSNNSNNFSLNFFSDPLSSPLLMLTMWLLPLMIMAS 80
Cdd:MTH00163   1 MLKFLFMLLFLIPLCFLKNSWWLVQS----LLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSS 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  81 QhhLAKEPCFRKKSYLSMLITLQMFLIMTFTATELILFYILFEATLIPTLIIITRWGNQTERLNAGMYFLFYTLTGSLPL 160
Cdd:MTH00163  77 E--SVYKKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPL 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 161 LVALIYLQSSMGSLNLLTINLwlkelpNSWSTNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGG 240
Cdd:MTH00163 155 LVGIFYLYNNSGSLSFFLLNF------FGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGG 228
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 241 YGMMRITMILDPTTKSMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILVQTPLGFMGATALMIAHG 320
Cdd:MTH00163 229 YGLLRVMSFFSKLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHG 308
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 321 LTSSMLFCLANSNYERIHSRTMLMARGLQTLLPLMTTWWLLASLNNLALPPSINLIGELLVTITSFSWSNITVILIGLNM 400
Cdd:MTH00163 309 LCSSGLFCLANIIYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLS 388
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 114224241 401 LITALYSLYMLITTQRGKLTYYLHNLNPSLTRENTLMSMHMLPLLFLTLNPKIIL 455
Cdd:MTH00163 389 FFSAAYSLYLYSYSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFM 443
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
37-451 1.97e-113

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 339.89  E-value: 1.97e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  37 MGLFLLNHPSNNSNNFSLNFFSDPLSSPLLMLTMWLLPLMIMASQHhlAKEPCFRKKSYLSMLITLQMFLIMTFTATELI 116
Cdd:MTH00150   1 LSLLLLYSSFSSYESLSELFSVDSMSSLLISLSLWISGLMMLASQK--SVKLRNKSSSFSLLVLLLCLILVLAFSVSSLL 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 117 LFYILFEATLIPTLIIITRWGNQTERLNAGMYFLFYTLTGSLPLLVALIYLQSSMGSLNLLTINLWLKELPNSWstnLLW 196
Cdd:MTH00150  79 MFYFFFEASLIPTLLLILGWGYQPERLQAGMYMMLYTVGASLPLLLVILWMSSSYGSSFMLLISSLRKLLSSMG---LWG 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 197 MACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMILDPTTKSMAYPFLMLCLWGMIMTSSIC 276
Cdd:MTH00150 156 LLVFLAFLVKLPMYPFHLWLPKAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLIC 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 277 LRQTDLKSLIAYSSVSHMALVIVAILVQTPLGFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARGLQTLLPLMT 356
Cdd:MTH00150 236 LRQSDVKSLIAYSSVGHMSLVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLS 315
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 357 TWWLLASLNNLALPPSINLIGELLVTITSFSWSNITVILIGLNMLITALYSLYMLITTQRGKLTYYLHNLNPSLTRENTL 436
Cdd:MTH00150 316 LWWFLFCIINMAAPPSLNLLSEIMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLL 395
                        410
                 ....*....|....*
gi 114224241 437 MSMHMLPLLFLTLNP 451
Cdd:MTH00150 396 LLLHWVPLLLLILKS 410
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
21-454 1.78e-105

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 320.77  E-value: 1.78e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  21 SMIWINTTSHSLMISLMGLFLLNHPSNNSNNFSLNFFSDPLSSPLLMLTMWLLPLMIMASQHHLAKEpcFRKKSYLSMLI 100
Cdd:MTH00205  18 FKDWSFFSNLLLIGLFFSSFFFSNSFLMTSFISSSFSFDSLSLPLIMLSFWISLLMVLASYKVFKSN--KNSKLFTVSVI 95
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 101 TLQMFLIMTFTATELILFYILFEATLIPTLIIITRWGNQTERLNAGMYFLFYTLTGSLPLLVALIYLQSSMGSLnllTIN 180
Cdd:MTH00205  96 MLLLILILSFSVDNLLLFYITFEASLIPTLILILGWGYQPERLQASMYMMMYTLCASLPLLIGLFFLNSLNFSL---SMF 172
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 181 LWLKELPNSWSTNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMILDPTTKSMAYP 260
Cdd:MTH00205 173 FNFPLNFSDFYLFLYWIFLMLAFLVKLPMYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLIRITSMLYKLNSNFSEL 252
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 261 FLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILVQTPLGFMGATALMIAHGLTSSMLFCLANSNYERIHSR 340
Cdd:MTH00205 253 FFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSSGMFALANVNYERTNSR 332
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 341 TMLMARGLQTLLPLMTTWWLLASLNNLALPPSINLIGELLVTITSFSWSNITVILIGLNMLITALYSLYMLITTQRGKLT 420
Cdd:MTH00205 333 SMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISFLSGAYSLYLYSQSQHGKVS 412
                        410       420       430
                 ....*....|....*....|....*....|....
gi 114224241 421 YYLHNLNPSLTRENTLMSMHMLPLLFLTLNPKII 454
Cdd:MTH00205 413 SQISSFLAISEREYYILILHWFPLNILILKLKIF 446
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
1-454 4.28e-103

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 314.76  E-value: 4.28e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241   1 MLKIIIPTIMLFPVTWYSNNSmIWINTTSHSLMISLMGLFLLNHPSNNSNNFSLNFFSDPLSSPLLMLTMWLLPLMIMAS 80
Cdd:MTH00014   1 MLKLIMPLISLLLLPLIKYPW-SWALTFSTLLLLSLFTLLNLYPMSAPYSMFTESLSSDMLSAPLITLTLWITALMILAS 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  81 QHHLAKEPCfrKKSYLSMLITLQMFLIMTFTATELILFYILFEATLIPTLIIITRWGNQTERLNAGMYFLFYTLTGSLPL 160
Cdd:MTH00014  80 FKIFQNNKA--PKTFMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASLPL 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 161 LVALIYLQSSMGSLNLLTINLWLkelPNSWSTNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGG 240
Cdd:MTH00014 158 LMSILLIFYTNNSLSMLMSSMEP---PSIYLMNLWWLITILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKLGG 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 241 YGMMRITMILDPTTKSMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILVQTPLGFMGATALMIAHG 320
Cdd:MTH00014 235 YGLLRMSSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIAHG 314
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 321 LTSSMLFCLANSNYERIHSRTMLMARGLQTLLPLMTTWWLLASLNNLALPPSINLIGELLVTITSFSWSNITVILIGLNM 400
Cdd:MTH00014 315 LCSSALFALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLAITS 394
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....
gi 114224241 401 LITALYSLYMLITTQRGKLTYYLHNLNPSLTRENTLMSMHMLPLLFLTLNPKII 454
Cdd:MTH00014 395 FLAAAYSLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILKPDLI 448
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
59-458 5.58e-78

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 250.77  E-value: 5.58e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  59 DPLSSPLLMLTMWLLPLMIMASQHHLAKepcfRKKSYLSMLITLQMFLIMTFTATELILFYILFEATLIPTLIIITRWGN 138
Cdd:COG1008   81 DGISLPLVLLTALLTPLAILASWNEIKK----RPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLIGIWGG 156
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 139 QtERLNAGMYFLFYTLTGSLPLLVALIYL--QSSMGSLNLLTinlwLKELPNSWST-NLLWMACIMAFMVKMPLYGLHLW 215
Cdd:COG1008  157 E-RRIYAAIKFFLYTLAGSLLMLVAILALyfLAGALTFDIAE----LAAAPLPLTAqLLLFLAFFIAFAVKVPMFPFHTW 231
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 216 LPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMILDP-TTKSMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294
Cdd:COG1008  232 LPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFALPLFPeASAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHM 311
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 295 ALVIVAILVQTPLGFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARGLQTLLPLMTTWWLLASLNNLALPPSIN 374
Cdd:COG1008  312 GFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSG 391
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 375 LIGELLVTITSFSWSNITVILIGLNMLITALYSLYMLITTQRGKLTYYLHNLNPSLTRENTLMSMHMLPLLFLTLNPKII 454
Cdd:COG1008  392 FVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMYQRVFFGPLKEELAELPDLNPRELAVLAPLAALILLLGLYPQPL 471

                 ....
gi 114224241 455 LGPT 458
Cdd:COG1008  472 LDLI 475
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
59-458 4.14e-75

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 243.31  E-value: 4.14e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241   59 DPLSSPLLMLTMWLLPLMIMASQHHLAKepcfRKKSYLSMLITLQMFLIMTFTATELILFYILFEATLIPTLIIITRWGN 138
Cdd:TIGR01972  76 DGISLLLVLLTALLTLLAILASWESIQK----RVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGG 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  139 QTeRLNAGMYFLFYTLTGSLPLLVALIYLQ-SSMGSLNLLTINLwlKELPNSWSTnLLWMACIMAFMVKMPLYGLHLWLP 217
Cdd:TIGR01972 152 PN-RIYAAMKFFLYTLAGSLLMLLAILGLYfLGGGTFDLLELLN--LPLPFGVQT-WLFLAFFIAFAVKVPLFPLHTWLP 227
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  218 KAHVEAPIAGSMVLAAVLLKLGGYGMMRITMILDP-TTKSMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 296
Cdd:TIGR01972 228 DAHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGF 307
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  297 VIVAILVQTPLGFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARGLQTLLPLMTTWWLLASLNNLALPPSINLI 376
Cdd:TIGR01972 308 VLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFV 387
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  377 GELLVTITSFSWSNITVILIGLNMLITALYSLYMLITTQRGKLT----YYLHNLNPsltRENTLMSMHMLPLLFLTLNPK 452
Cdd:TIGR01972 388 GEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLYKRVFFGELSnpevAEFPDLNG---REIAVLAPLVVLILFLGLYPN 464

                  ....*.
gi 114224241  453 IILGPT 458
Cdd:TIGR01972 465 PLLDLT 470
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
59-458 6.06e-72

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 235.48  E-value: 6.06e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  59 DPLSSPLLMLTMWLLPLMIMASQHHLAKepcfRKKSYLSMLITLQMFLIMTFTATELILFYILFEATLIPTLIIITRWGn 138
Cdd:PRK05846  81 DGISLLLVVLTALLTPLAVLASWEEIKK----RVKFYMAALLWLEGGVIGVFAALDLLLFYVFFEAMLIPMYFLIGVWG- 155
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 139 QTERLNAGMYFLFYTLTGSLPLLVALIYL----QSSMGSLNLLTinlWLK-ELPNSWSTnLLWMACIMAFMVKMPLYGLH 213
Cdd:PRK05846 156 GKNRIYAATKFFLYTLLGSLLMLVAIIYLvvvyYNATGTFDIAD---LLNlPLPPGVQY-WLFLAFFIAFAVKMPMFPLH 231
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 214 LWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMILDPTTKSMAYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYSSVS 292
Cdd:PRK05846 232 TWLPDAHVQAPTAGSVLLAGILLKMGAYGLLRFSLPLFPDASHEFAPIIItLGVIAIIYGALVALAQTDIKKLIAYSSIS 311
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 293 HMALVIVAILVQTPLGFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARGLQTLLPLMTTWWLLASLNNLALPPS 372
Cdd:PRK05846 312 HMGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGT 391
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 373 INLIGELLVTITSFSWSNITVILIGLNMLITALYSLYMLITTQRGKLTYYLHNLNPSLTRENTLMSMHMLPLLFLTLNPK 452
Cdd:PRK05846 392 SGFVGEFLILLGSFQVNPVIAFIATTGLILAAVYSLWLYQRVMFGPVKNEVAKLKDLNGRELLILLPLVALLLLLGVYPK 471

                 ....*.
gi 114224241 453 IILGPT 458
Cdd:PRK05846 472 PLLDVI 477
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
59-410 2.58e-65

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 217.61  E-value: 2.58e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  59 DPLSSPLLMLTMWLLPLMIMASQHHLAkepcFRKKSYLSMLITLQMFLIMTFTATELILFYILFEATLIPTLIIITRWGN 138
Cdd:MTH00217  79 DGISIFFLILTALLTPICILISWNSIK----FLIKEFLLCLLVIEILLMGVFTILDLVGFYILFEGILIPMFLIIGIWGS 154
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 139 QTERLNAGMYFLFYTLTGSLPLLVALIYLQSSMGSLNLLTinLWLKELPNSWStNLLWMACIMAFMVKMPLYGLHLWLPK 218
Cdd:MTH00217 155 REEKVQASYYFFFYTFIGSVFMLLGIFTLYSYAGTTDYQA--LCCLKIEKELQ-YFIFLGFFLSLAIKIPKIPFHIWLPQ 231
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 219 AHVEAPIAGSMVLAAVLLKLGGYGMMRITMILDPTTKSMAYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297
Cdd:MTH00217 232 AHVEAPVAGSVILAGVLLKLGGYGFIRFSWPLLPEASEYFSPLIQtLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLV 311
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 298 IVAILVQTPLGFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARGLQTLLPLMTTWWLLASLNNLALPPSINLIG 377
Cdd:MTH00217 312 TLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILMLLLVLANASIPLSCNFVG 391
                        330       340       350
                 ....*....|....*....|....*....|...
gi 114224241 378 ELLVTITSFSWSNITVILIGLNMLITALYSLYM 410
Cdd:MTH00217 392 EFLSLLAAFEYSYIVGVLASLGMVLSAGYSIYL 424
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
112-398 5.75e-63

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 205.62  E-value: 5.75e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  112 ATELILFYILFEATLIPTLIIITRWGNQTERLNAGMYFLFYTLTGSLPLLVALIYLQSSMGSLNLLTINLWLKELPNSWS 191
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNSSG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  192 TNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMILDPTTKSMAYPFLMLCLWGMIM 271
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  272 TSSICLRQTDLKSLIAYSSVSHMALVIVAILVQTPLGFMGATALMIAHGLTSSMLFCLANS-NYERIHSRTMLMARGLQT 350
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSvIYRRVHTRNIRDYGGLAK 240
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 114224241  351 LLPLMTTWWLLASLNNLALPPSINLIGELLVTITSFSWSNITVILIGL 398
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGV 288
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
59-457 7.32e-62

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 208.76  E-value: 7.32e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  59 DPLSSPLLMLTMWLLPLMIMASQhhlaKEPCFRKKSYLSMLITLQMFLIMTFTATELILFYILFEATLIPTLIIITRWGN 138
Cdd:MTH00204  82 DGVSLFFILLTTLLIPICILISW----KSIKFLFKEFLLCLLFLEVLLIGVFSVLDLLLFYILFEGILIPMFLLIGIWGS 157
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 139 QTERLNAGMYFLFYTLTGSLPLLVALIYLQSSMGSLNLLtiNLWLKELPNSWSTNLLwMACIMAFMVKMPLYGLHLWLPK 218
Cdd:MTH00204 158 REEKVRASYYFFFYTFAGSVFMLLGIFQLYSITGTTDYQ--ILLNIKLPLSIQKWLL-VGFFLSLAVKIPQIPFHIWLPQ 234
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 219 AHVEAPIAGSMVLAAVLLKLGGYGMMRITMILDPTTKSMAYPF-LMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297
Cdd:MTH00204 235 AHVEAPVAGSVILAGILLKLGGYGFLRFSWPLFPAASEYFAPLiVMLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLV 314
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 298 IVAILVQTPLGFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARGLQTLLPLMTTWWLLASLNNLALPPSINLIG 377
Cdd:MTH00204 315 PLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIMLVLSLANMGFPLSCNFVG 394
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 378 ELLVTITSFSWSNITVILIGLNMLITALYSLYMLITTQRGKLTYYLHNLNPSLTRENTLMSMHMLPLLFLTLNPKIILGP 457
Cdd:MTH00204 395 EFFSLLAAFEYSLGLGVLVTSGMVWSAAYSLYLYNRISFGGGSNYLLFSRDLNRRELLAILPLIIAIFLLGIVPFIIIDL 474
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
59-409 5.20e-60

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 204.39  E-value: 5.20e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  59 DPLSSPLLMLTMWLLPLMIMASQHHLAkepcFRKKSYLSMLITLQMFLIMTFTATELILFYILFEATLIPTLIIITRWGN 138
Cdd:MTH00226 101 DGISIYFIILTGFIVPCSILISWHSVK----YLTKSFLICMLILEFLLYAVFSVLDIFMFYILFEGVLIPMYLILGIWGS 176
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 139 QTERLNAGMYFLFYTLTGSLPLLVALIYLQSSMGSLNLLTInLWLKELPNSWSTNLLWMACIMAFMVKMPLYGLHLWLPK 218
Cdd:MTH00226 177 REEKMQAAYYFFFYTLIGSVLMLLCLFSLYNIHGTTDYLTL-ASCSHVVSEQTQKWIFLGIFLAMAVKIPIFPFHIWLPK 255
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 219 AHVEAPIAGSMVLAAVLLKLGGYGMMRITM-ILDPTTKSMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297
Cdd:MTH00226 256 AHVEAPVAGSVLLAGILLKLGGYGLVRLSWpILPLGAQNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGLV 335
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 298 IVAILVQTPLGFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARGLQTLLPLMTTWWLLASLNNLALPPSINLIG 377
Cdd:MTH00226 336 SITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNFIG 415
                        330       340       350
                 ....*....|....*....|....*....|..
gi 114224241 378 ELLVTITSFSWSNITVILIGLNMLITALYSLY 409
Cdd:MTH00226 416 EYLSILSSFNWNPIIGVFVCSGVILSAVYSFY 447
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
102-442 1.75e-43

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 157.76  E-value: 1.75e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 102 LQMFLIMTFTATELILFYILFEATLIPTLIIITRWGNQTERLNAGMYFLFYTLTGSLPLLVALIYlqssmgslNLLTINL 181
Cdd:MTH00094  71 LILICLLFFVSSNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLFVYLK--------NFFFFSL 142
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 182 WLKELPNSWSTNLLwmaCIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMILDPTtksMAYPF 261
Cdd:MTH00094 143 CYFDFFLSWEMFFI---LSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLRILGSLNFV---YNNFW 216
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 262 LMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILVQTPLGFMGATALMIAHGLTSSMLFCLANSNYERIHSRT 341
Cdd:MTH00094 217 IIFSLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRL 296
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 342 MLMARGLQTLLPLMTTWWLLASLNNLALPPSINLIGELLVTITSFSWSNITVILIGLNMLITALYSLYMLITTQRGKLTY 421
Cdd:MTH00094 297 IYFMNSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIVSSFMGKKFS 376
                        330       340
                 ....*....|....*....|.
gi 114224241 422 YLHNLNPSLTRENTLMSMHML 442
Cdd:MTH00094 377 NFNNFNVGLSLPLVFMMFNMF 397
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
59-411 8.25e-43

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 157.89  E-value: 8.25e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  59 DPLSSPLLMLTMWLLPLMIMASQHhLAKEPcfrkKSYLSMLITLQMFLIMTFTATELILFYILFEATLIPTLIIITRWGN 138
Cdd:PRK12561  58 DGLSMPLVLLSGLITTLSIFASWK-VTRKP----RLFYFLMLVLYSAQIGVFLAQDLLLFFLMWELELVPVYLLISIWGG 132
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 139 QtERLNAGMYFLFYTLTGSLPLLVALIYLQSSMGSLNLLTINLWLKELPNSWSTnLLWMACIMAFMVKMPLYGLHLWLPK 218
Cdd:PRK12561 133 Q-KRLYAATKFILYTALASIFILVAGLALALSGDTFTFDLAELGAKSYPLALEL-LLYAGFLIAFGVKLPIFPLHTWLPD 210
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 219 AHVEAPIAGSMVLAAVLLKLGGYGMMRITMILDPTTKSMAYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297
Cdd:PRK12561 211 AHGEASAPVSMILAGVLLKMGGYALIRFNVQMLPDAHVYFAPALAiLGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFV 290
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 298 IVAILVQTPLGFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARGLQTLLPLMTTWWLLASLNNLALPPSINLIG 377
Cdd:PRK12561 291 LLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMPKTFALFTASSMASLALPGMSGFVS 370
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 114224241 378 ELLV-------TITSFSWSNITVILIGLNMLITALYSLYML 411
Cdd:PRK12561 371 ELTVflgitssDVYSSTFRTITILLAAVGLILTPIYLLSML 411
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
59-430 4.71e-40

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 150.24  E-value: 4.71e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  59 DPLSSPLLMLTMWLLPLMIMASQHHLAkepcfRKKSYLSMLITLQMFLIMTFTATELILFYILFEATLIPTLIIITRWGN 138
Cdd:PRK06473  78 DGLSLPLLVLNSLLTLIAIYSSDESIQ-----RPRFYYSLLLLLNAGVSGAFLAQDLLLFFLFYELELIPLYLLIAIWGG 152
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 139 QtERLNAGMYFLFYTLTGSLPLLVALIYLQSSMGSLNLLTINLWLKELPnsWSTNLLWMACIM-AFMVKMPLYGLHLWLP 217
Cdd:PRK06473 153 Q-RRGYAATKFLLYTAISGILILVSFLGLVWLSGASSFDYEPLRSHTLP--LSTQLLLLAPILvGFGIKIPLVPFHTWLP 229
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 218 KAHVEAPIAGSMVLAAVLLKLGGYGMMRITMILDPTTKSMAYPFL-MLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 296
Cdd:PRK06473 230 DAHVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPWLaTWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGY 309
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 297 VIVAILVQTPLGFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARGL---QTLLPLMTTWWLLASLNNLALPPSI 373
Cdd:PRK06473 310 ILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLlnpERGLPITGSLMILGVMASAGIPGMV 389
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 114224241 374 NLIGELLVTITSFSWSNITVILIGLNMLITALYSLYMLITTQRGKLTYYLHNLNPSL 430
Cdd:PRK06473 390 GFIAEFLVFRGSFPIFPVQTLLCMIGTGLTAVYFLLLVNRVFFGRLTAELSNLPRVL 446
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
59-415 3.01e-39

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 146.83  E-value: 3.01e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  59 DPLSSPLLMLTMWLLPLMIMASQHHLAKEPcfRKKSYLSMLITLQMFLIMTFTATELILFYILFEATLIPTLIIITRWGN 138
Cdd:COG0651   75 DRLSALFLLLTALVALAVLLYSIGYMRHER--RGRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGT 152
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 139 QtERLNAGMYFLFYTLTGSLPLLVALIYLQSSMGSLNLLTINLWLKELPNSWSTnLLWMACIMAFMVKMPLYGLHLWLPK 218
Cdd:COG0651  153 K-EALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLAELDPGLLL-AAFALLLVGFGIKAALFPLHFWLPD 230
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 219 AHVEAPIAGSMVLAAVLLKLGGYGMMRITMILDPTTKSMAYPFLMLCLWG--MIMTSSICLRQTDLKSLIAYSSVSHMAL 296
Cdd:COG0651  231 AYPAAPSPVSALLSGLLTKVGVYAILRVLTLLFGADPALFLGTLLLVLGLltMLVGALGALAQRDLKRLLAYSSVSQIGY 310
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 297 VIVAILVQTPLGFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARGLQTLLPLMTTWWLLASLNNLALPPSINLI 376
Cdd:COG0651  311 ILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFV 390
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 114224241 377 GELLVTITSFSWSN-ITVILIGLNMLITALYSLYMLITTQ 415
Cdd:COG0651  391 SKWLLLQAALEAGAwLLAAVLLLSSLLTLAYFVRIFGRAQ 430
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
59-454 2.22e-36

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 140.61  E-value: 2.22e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  59 DPLSSPLLMLTMWLLPLMIMAsqhhlAKEPCFRKKSYLSMLITLQMFLIMTFTATELILFYILFEATLIPTLIIITRWGN 138
Cdd:PRK02546  86 DGLSMPLILLTGFITTLAVLA-----AWPVTFKPKLFYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWGG 160
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 139 QtERLNAGMYFLFYTLTGSLPLLVALIYLQSSMGSLNLLTINLWLKELPNSWStNLLWMACIMAFMVKMPLYGLHLWLPK 218
Cdd:PRK02546 161 K-KRQYAATKFILYTAGSSLFILLAALAMAFYGDTPTFDMTALAAKDFGLGFQ-LLCYAGLLIAYGVKLPIVPLHTWLPD 238
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 219 AHVEAPIAGSMVLAAVLLKLGGYGMMRITMILDPTTKSMAYPFL-MLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297
Cdd:PRK02546 239 AHGEATAPVHMLLAGILLKMGGYALLRMNAGMLPDAHAQFAPLLiVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFV 318
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 298 IVAILVQTPLGFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARGLQTLLPLMTTWWLLASLNNLALPPSINLIG 377
Cdd:PRK02546 319 LIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAMWTACSLASLALPGMSGFVA 398
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 378 ELLVTIT-------SFSWSNITVILIGLNMLITALYSLYMLITTQRGKLTYYL---HNLNPSLTRENTLMSMHMLPLLFL 447
Cdd:PRK02546 399 ELMVFVGfatsdayTLPFRVVVVFLAAVGVILTPIYLLSMLREIFFGPENKELvshEKLVDAEPREVFIIACLLVPIIGI 478

                 ....*..
gi 114224241 448 TLNPKII 454
Cdd:PRK02546 479 GLYPKLV 485
ndhD CHL00011
NADH dehydrogenase subunit 4
107-411 1.24e-35

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 137.77  E-value: 1.24e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 107 IMTFTATELILFYILFEATLIPTLIIITRWGNQtERLNAGMYFLFYTLTGSLPLLVALIYLQ---SSMGSLNLLTinLWL 183
Cdd:CHL00011 126 IGLFSSRDLLLFFIMWELELIPVYLLLSMWGGK-KRLYSATKFILYTAGGSIFLLIGVLGMGlygSNEPTLNFET--LAN 202
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 184 KELPNSWSTnLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMILDPTTKSMAYPFLM 263
Cdd:CHL00011 203 QSYPVALEI-LFYIGFLIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLV 281
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 264 LC-LWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILVQTPLGFMGATALMIAHGLTSSMLFCLANSNYERIhsRTM 342
Cdd:CHL00011 282 IVgAIQIIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRI--RLV 359
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 114224241 343 LMAR--GLQTLLPLMTTWWLLASLNNLALPPSINLIGELLV---TITSFSWSNITVILI----GLNMLITALYSLYML 411
Cdd:CHL00011 360 YLDEmgGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELIVffgIITSQKYLLMPKILItfvmAIGMILTPIYLLSML 437
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
59-451 1.10e-31

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 126.75  E-value: 1.10e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  59 DPLSSPLLMLTMWLLPLMIMASQHHLAkepcfRKKSYLSMLITLQMFLIMTFTATELILFYILFEATLIPTLIIITRWGN 138
Cdd:PRK07363  78 DGLSLPLLVLNSLLTWIAIYSIGENTE-----RPRLYYSLILLINGGIAGALLAQNLLLFFLFYELELIPFYLLIAIWGG 152
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 139 QtERLNAGMYFLFYTLTGSLPLLVALIYLQSSMGSLNLLTINLWLKELPNSWSTNLLWMaCIMAFMVKMPLYGLHLWLPK 218
Cdd:PRK07363 153 E-KRGYASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSFDYDAISTQNLSLNTQLILLTG-LLLGFGIKIPLVPLHTWLPD 230
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 219 AHVEAPIAGSMVLAAVLLKLGGYGMMRITMILDPTTKSMAYPflMLCLWGMIMT---SSICLRQTDLKSLIAYSSVSHMA 295
Cdd:PRK07363 231 AYTEASPAVAILLGGVLAKLGTYGLLRFGLQLFPQTWSLVAP--GLAIIGTISViygALSAIAQKDIKRMVAYSSIGHMG 308
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 296 LVIVAILVQTPLGFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARGLQTL---LPLMTTWWLLASLNNLALPPS 372
Cdd:PRK07363 309 YILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGLMNPirgLPLTSALLVLAGMASAGIPGL 388
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 114224241 373 INLIGELLVTITSFSWSNITVILIGLNMLITALYSLYMLITTQRGKLTYYLHNLNPSLTRENTLMSMHMLPLLFLTLNP 451
Cdd:PRK07363 389 VGFVAEFIVFQGSFSTFPIPTLLCIVASGLTAVYFVILLNRTCFGRLDNKLAYYPKVLWSEKIPALILTALILFLGVQP 467
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
108-406 7.34e-21

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 94.95  E-value: 7.34e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 108 MTFTATeLILFYILFEATLIPTLIIITRWGNQtERLNAGMYFLFYTLTGSLPLLVALIYLQSSMGSLNLLTINlwlKELP 187
Cdd:PRK08375 122 ALLTAD-LFNLFVFLEIMSLSSYALVAMGGDR-RALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLA---GALA 196
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 188 NSWSTNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITM----ILDPTTKSMAYPFLM 263
Cdd:PRK08375 197 ENPTVVTAFGFVLLALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYFtvfgGDFRFALGLGWLLAV 276
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 264 LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILVQTPLGFMGATALMIAHGLTSSMLFCLANSNYERIHSRTML 343
Cdd:PRK08375 277 LALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLS 356
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 114224241 344 MARGLQTLLPLMTTWWLLASLNNLALPPSINLIGELLVTITSFS---WSNITVILIGlnMLITALY 406
Cdd:PRK08375 357 ELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEagqWLVLAVLLAS--SLLALLY 420
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
59-380 2.44e-20

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 93.50  E-value: 2.44e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  59 DPLSSPLLMLTMWLLPLMIMASQHHLAKEPcfRKKSYLSMLITLQMFLIMTFTATELILFYILFEATLIPTLIIITRWGN 138
Cdd:PRK12667  81 DLLGALLGLLTALVMFLILIYSYWYLEHES--GPEWYYTLLLGLEAGMLGILLTGDAFNLFVMLEVLSISAYGLVAYYRD 158
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 139 QTERLNAGMYFLFYTLTGSLPLLVALIYLQSSMGSLNL---------LTINLWLKELPN-SWSTNLLWMACIMAFMVKMP 208
Cdd:PRK12667 159 RGDAVEAAIKYALIGAVGTTLYFLALAFLYATFGTLNMadlsakirgLSFPLTGGLAGNpPLALGVALALALWAFTIKAA 238
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 209 LYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRI-------TMILDPTTKSMAYPFLMLCLWGMIMTSSICLRQTD 281
Cdd:PRK12667 239 IFPNHFWLPDAHPAAPSPVSAMLSGLVVNVGAYAIIRFlytifgiSPSLIDFRAALSPILIILGAVSAIIGALMMVVQKD 318
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 282 LKSLIAYSSVSHMALVIVAILVQTPLGFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARGLQTLLPLMTTWWLL 361
Cdd:PRK12667 319 VKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFLI 398
                        330
                 ....*....|....*....
gi 114224241 362 ASLNNLALPPSINLIGELL 380
Cdd:PRK12667 399 GALSLVGIPPLNGFFSKLL 417
Oxidored_q5_N pfam01059
NADH-ubiquinone oxidoreductase chain 4, amino terminus;
1-109 3.36e-19

NADH-ubiquinone oxidoreductase chain 4, amino terminus;


Pssm-ID: 366442 [Multi-domain]  Cd Length: 110  Bit Score: 82.57  E-value: 3.36e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241    1 MLKIIIPTIMLFPVTWYSNNSMIWINTTSHSLMISLMGLFLLNHPSNNSNNFS-LNFFSDPLSSPLLMLTMWLLPLMIMA 79
Cdd:pfam01059   1 MLKILLPTLMLIPLTFLSKPKWLWTTSTLYSLLLALLSLLLLNNPSNFSWSNLsYFLGIDSLSYPLIILSCWLLPLMILA 80
                          90       100       110
                  ....*....|....*....|....*....|
gi 114224241   80 SQHHLAKEPCFRKKSYLSMLITLQMFLIMT 109
Cdd:pfam01059  81 SQKHLKSEPNNRQRTFIFLLILLQLFLILT 110
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
206-413 5.64e-19

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 89.22  E-value: 5.64e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 206 KMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMILDPTTKSMAYPFLMLC--LWGMIMTSSICLRQTDLK 283
Cdd:PRK06458 227 KVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRYYILIDAAIGSDFPGRLLLIfgLLSVLVAAFFLLRQRDIK 306
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 284 SLIAYSSVSHMALVIVAILVQTPLGFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARGLQTLLPLMTTWWLLAS 363
Cdd:PRK06458 307 RLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPLTGWGLMLGA 386
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 114224241 364 LNNLALPPSINLIGELLVTITSFSWSNITVILIGLNMLITALYSLYMLIT 413
Cdd:PRK06458 387 LAIAGMPPFGVFISEFLILTAGLARGPLLIAILLLLLLTLAFAALVRRVA 436
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
105-387 6.22e-17

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 82.28  E-value: 6.22e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 105 FLIMTFTATELILFYILFEATLIPTLIIITRWGNQTERLNAGMYFLFYTLTGSLPLLVALIYLQSSMGSLNLltiNLWLK 184
Cdd:MTH00062  83 FSILCFCVNNSLLFWFFYELSIIPLLYLLFSESPYSERYLASWYFLGYLLLTSLPLLLCLLYLSLVNGSFNF---SDWGS 159
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 185 ELPNSWSTNLLwmaCIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRIT-MILDPTTKSMAYPFLM 263
Cdd:MTH00062 160 DDSVSLIVYYV---LSFMFITKVPLFPFHTWLPIVHAEASSPVSIFLSGYIMKLGLLGVYRFCgFIFSGSFLGYLFLCCL 236
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 264 LCLWGMIMTSSIClrqtDLKSLIAYSSVSHMALVIVAILVQTPLGFMGATALMIAHGLTSSMLFCLANSNYERIHSRTML 343
Cdd:MTH00062 237 FSVFFLITACSEL----DGKRWLAFLSLSHILVPVLGLFVGDWSSINLSFFYCLGHGLSAGLVFLLLWCFYEVSGSRNWV 312
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 114224241 344 MARGLQTLLPLMTTWWLLASLNNLALPPSINLIGELLVTITSFS 387
Cdd:MTH00062 313 LLKSGINGSLVLRVIVVFSFLSLCSFPPTIQFFCEVFLVSSSFG 356
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
91-327 2.46e-16

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 81.58  E-value: 2.46e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  91 RKKSYLSMLITLQMF-LIMTFTATELILFYILFEATLIPTLIIITRwGNQTERLNAGMYFLFYTLtGSLPLLVALIYLQS 169
Cdd:PRK08668  95 KNDAYFNMFALMSLAgVLGVFLANDLLTLYIFWEIMTFSSFMMVPM-GKKESRKASLKYFVLSAI-GAYAMLYAIFLIYA 172
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 170 SMGSLNLLTInlwLKELPNSWSTNLLWMAC--IMAFMV-KMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMrI 246
Cdd:PRK08668 173 KTGTFDFADI---SQGLINDTSTGFALIVFlfLLAFGVaKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSKLGAYGFL-L 248
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 247 TMILDPTTK------------SMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILVQTPLGFMGATA 314
Cdd:PRK08668 249 VLYVLPGTKlfsefgtyrgvpLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLF 328
                        250
                 ....*....|...
gi 114224241 315 LMIAHGLTSSMLF 327
Cdd:PRK08668 329 HVFNHALFKGLFF 341
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
95-327 2.21e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 78.09  E-value: 2.21e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  95 YLSMLITLQMFLIMTFTATELILFYILFEATLIPTLIIITRwGNQTERLNAGMYFLFYTLTGSLPLLVALIYLQSSMGSL 174
Cdd:PRK12665 113 FLPTYLILVAGVSNAFLAGDLFNLYVGFEILLVASYVLLTL-GATAARVRAGVTYVMVSMVSSLLFLIGIALVYAATGTL 191
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 175 NLLTINLWLKELPNSWSTNLLWMAcIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMILDPTt 254
Cdd:PRK12665 192 NMADLAVRLDELPSGTRTALFAVL-LVAFGIKAAVFPLSFWLPDSYPTAPAPVTAVFAGLLTKVGVYAIIRTHTLLFPG- 269
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 114224241 255 KSMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILVQTPLGFMGATALMIAHGLTSSMLF 327
Cdd:PRK12665 270 GGLDTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLF 342
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
102-327 1.24e-14

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 75.95  E-value: 1.24e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 102 LQMFLIMTFTATELILFYILFE-ATLIPTLIIITRwgNQTERLNAGMYFLFYTLTGSLPLLVALIYL------QSSMGSL 174
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAElTTVFSAMLIAIL--SARENIDAALKYIFIASTAMIFAFIGLIFLfsltrqALGTGTL 188
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 175 NLLTINLWLKELPNSwSTNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMILDPTT 254
Cdd:PRK08676 189 NWTELAAHASLLSPS-VLGASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSG 267
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 114224241 255 KSMAYPFLMLCLwGMIMTSSIC---LRQTDLKSLIAYSSVSHMALVIVAILVQTPLGFMGATALMIAHGLTSSMLF 327
Cdd:PRK08676 268 AAEQFSNVLIGL-GIFSIAVAAfsmLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLF 342
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
104-327 5.10e-11

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 64.40  E-value: 5.10e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 104 MFLIMTFTATELIL------FYILFEATLIpTLIIITRWGNQTERLNAGMYFLFYTLTGSLPLLVALIYLQSSMGSLNLL 177
Cdd:PRK08377 113 LFLLLMLGATGMIAtgdifnLFVFMEITAI-TAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGTLNMA 191
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 178 TINLWLKELpNSWSTNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMILDPTT--K 255
Cdd:PRK08377 192 HIAQLAGTI-DPTVAQVGLALLIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLMQNANgwS 270
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 114224241 256 SMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILVQTPLGFMGATALMIAHGLTSSMLF 327
Cdd:PRK08377 271 SVLKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLF 342
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
119-397 5.72e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 64.37  E-value: 5.72e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 119 YILFEATLIPTLIIITRwGNQTERLNAGMYFLFYTLTGSLPLLVALIYLQSSMGSLNLLTINLWLKELPNSWSTNLLWMA 198
Cdd:PRK12662 136 YVFLEISSISSYVLVAM-GRDKKALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLNMGDMFLIIQDLPTNRAIQIGVLF 214
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 199 CIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMI-----LDPTTKSMAYPFLMLCLWGMIMTS 273
Cdd:PRK12662 215 IMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVYDvfkanFVFTTLPFNNVFMILAALAIVFGS 294
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 274 SICLRQTDLKSLIAYSSVSHMALVIVAILVQTPLGFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARGLQTLLP 353
Cdd:PRK12662 295 VLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHFGTTKLEDCLNLWKSMP 374
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 114224241 354 LMTTWWLLASLNNLALPPSINLIGE---LLVTITSFSWSNITVILIG 397
Cdd:PRK12662 375 KITLAFVLLSLSLIGMPPTSGFVAKwyiLDAFIKSNAWIGLVVLLVG 421
PRK12650 PRK12650
DUF4040 family protein;
112-330 7.18e-11

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 64.68  E-value: 7.18e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 112 ATELILFYILFEATLIPTLIIITRWGNQTErlNAGMYFLFYTLTGSLPLLVALIYLQSSMGSLNL---LTINLWLKelpN 188
Cdd:PRK12650 129 ADDVVVLFVAWELVSLASFFLIARSGSGGE--AGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLsgiLHSDVWAE---K 203
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 189 SWSTNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMILDPTtksMAYPFLmLCLWG 268
Cdd:PRK12650 204 PGLTTVVAVLIAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDV---AVWNWL-LIIVG 279
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 114224241 269 M---IMTSSICLRQTDLKSLIAYSSVSHMALVIVAILVQTPLGFMGATALMIAHGLTSSMLFCLA 330
Cdd:PRK12650 280 MitaLMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLI 344
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
90-339 1.04e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 63.43  E-value: 1.04e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  90 FRKKSYLSM-LITLQMFLIMTFTATELILFYILFEATLIPTLIIITrWGNQTERLNAGMYFLFYTLTGSLPLLVALIYLQ 168
Cdd:PRK07234  90 SAKTRFFYAqLLILHGSVNAAFVCADLISLYVALEVLSIATFLLVA-YPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVY 168
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 169 SSMGSLNLltinlwlKELPNSWSTNLLWMAciMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITM 248
Cdd:PRK07234 169 QANGTFAF-------SGLATADPEAFALIA--LGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCAL 239
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 249 ILDPTTKSMAYPFLMLCLWGmimtSSICLRQTDLKSLIAYSSVSHMALVIVAILVqtplgfmgATALMIAHGLTSSMLFC 328
Cdd:PRK07234 240 DVPGLDLIVRIFGVGTALLG----VLFALLEKDLKRMLAFSTISQLGFILAAPLV--------GGLYALAHGLVKSTLFL 307
                        250
                 ....*....|.
gi 114224241 329 LANSNYERIHS 339
Cdd:PRK07234 308 CAGALPSRNFT 318
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
115-327 1.07e-10

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 63.63  E-value: 1.07e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 115 LILFYILFEATLIPTLIIITRWGNQTERLNAGMYFLFYTLTGSLPLLVALIYLQSSMGSLNLLTINLWLKELPNSWSTNL 194
Cdd:COG1009  133 LLLLFVFWELVGLCSYLLIGFWYEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAAAPTILSSPLLTL 212
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 195 LWMACIMAFMVKMPLYGLHLWLPKAhVEAPIAGSMVL-AAVLLKLGGYGMMRITMILDPTtkSMAYPFLMLC-LWGMIMT 272
Cdd:COG1009  213 ILLLLLLGAFGKSAQFPLHFWLPDA-MEGPTPVSALLhAATMVKAGVYLLARLSPLFALS--PVWLTVVAIIgAITALFA 289
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 114224241 273 SSICLRQTDLKSLIAYSSVSHMALVIVAILVQtplGFMGATALMIAHGLTSSMLF 327
Cdd:COG1009  290 ALIALAQTDIKRVLAYSTVSQLGYMFLALGVG---AYVAALFHLLTHAFFKALLF 341
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
91-386 5.45e-10

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 61.67  E-value: 5.45e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  91 RKKSYLSMLITLQMF-LIMTFTATELILFYILFEATLIPTLIIITRWGNQTERLNAGMYFLFYTLTGSLPLLVALIYLQS 169
Cdd:PRK08667 108 ERANLLSALTALFILsMLGVVASANTFSFLFFWEIMALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFI 187
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 170 SMGSLNLLTINLWLKELPnswstnLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRItmI 249
Cdd:PRK08667 188 QTGSFELSPLGASAGILS------LVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRF--L 259
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 250 LDPTTKSMAYPFLMLCLwGMI---MTSSICLRQTDLKSLIAYSSVSHMALVIVAILVQTPLGFMGATALM---------- 316
Cdd:PRK08667 260 MDVLSPELWWGVLILLA-GSIsalLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLYVIFGVYGLDTLAllalggalfh 338
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 114224241 317 -IAHGLTSSMLFCLANSNYERIHSRTMLMARGLQTLLPLMTTWWLLASLNNLALPPSINLIGELLVtITSF 386
Cdd:PRK08667 339 sLNHALFKSLLFLTAGSVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLL-YESF 408
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
119-332 6.15e-10

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 61.12  E-value: 6.15e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 119 YILFEATLIPTLIIITrWGNQTERLNAGMYFLFYTLTGSLPLLVALIYLQSSMGSLNLLTINLWLKELPNSWSTNLLWMA 198
Cdd:PRK12663 134 YVWFEVMLIASFVLIT-LGQEREQLRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLNMAHIAMRLNDMGDTATLTTIALL 212
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 199 CIMAFMVKMPLYGLHlWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRI-TMILDPTTKSMAYPFLMLCLWGMIMTSSICL 277
Cdd:PRK12663 213 FLLAFGMKAALFPFM-WLPAAYHTPNTEVAALFAALLTKVGIYALIRVfTLLFPQERELLHPLLATMAAITMVIGALGAL 291
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 114224241 278 RQTDLKSLIAYSSVSHMALVIVAILVQTPLGFMGATALMIAHGLTSSMLFCLANS 332
Cdd:PRK12663 292 AYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVHDMVVKTALFLIAGS 346
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
136-327 6.24e-10

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 61.45  E-value: 6.24e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 136 WGNQTER-LNAGM-YFLFYTLTGSLpLLVALIYLQSSMGSLNLLTINlwlkelpnSWSTNLLWMACImAFMVKMPLYGLH 213
Cdd:PRK12668 134 WARGTKAaVRAGFrYLLVHVLGGVL-LLAGILLHYAETGSFAFGAIA--------GLGGTAAWLILI-GFGVNAAFPPLH 203
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 214 LWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRitmildpttksmAYPFLMLCLW-GMIMT---SSICLRQTDLKSLIAYS 289
Cdd:PRK12668 204 AWLPDAYPEATVTGSVFLSAFTTKTAVYALAR------------AFPGTELLIYiGAAMAvygVFFALLENDLRRLLSYH 271
                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 114224241 290 SVSHMALVIVAILVQTPLGFMGATALMIAHGLTSSMLF 327
Cdd:PRK12668 272 IVSQVGYMVAGIGIGTALAINGAVAHAFNHILYKGLLF 309
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
104-330 1.85e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 59.58  E-value: 1.85e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 104 MFLIM----TFTATELILFYILFEATLIPTLIIITRWGNQTErLNAGMYFLFYTLTGSLPLLVALIYLQSSMGSLNLLTI 179
Cdd:PRK07691 115 LFMLAgvngAFLTGDIFNLFVFFEVMLMASYVLIVIGGTKIQ-LRESIKYVLINVVSSAFFVVAVAILYSVVGTLNMADI 193
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 180 NLWLKELPNSWS--TNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRI-TMILDPTTKS 256
Cdd:PRK07691 194 SVKIAELSAGQTglITVVAILFLFVFATKAGLFPLYFWLPGSYYAPPIAIAALFGALLTKVGVYAIARTfTLFFSHDTSF 273
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 114224241 257 MAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILVQTPLGFMGATALMIAHGLTSSMLFCLA 330
Cdd:PRK07691 274 THYLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTESGMIGAIYYLIHDMIVKAALFLLI 347
PRK12646 PRK12646
DUF4040 family protein;
100-301 2.82e-09

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 59.38  E-value: 2.82e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 100 ITLQMF-LIMTFTATELILFYILFEATLIPTLIIITRWGNQTERLNAGMYFLFYTLTGSLPLLVALIYLQSSMGSLNLLT 178
Cdd:PRK12646 116 LTLFMFsMIGIVLSDNTILMYVFWELTSVSSFLLISYWYNNGDSQFGAIQSFMITVFGGLALLVGFIMLYIMTGTNNITE 195
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 179 INLWLKELPNS-WSTNLLWMACIMAFmVKMPLYGLHLWLPKAhVEAPIAGSMVL-AAVLLKLGGYGMMRITMILDpTTKS 256
Cdd:PRK12646 196 ILGQADHIKNHgLFIPMIFMFLLGAF-TKSAQFPFHIWLPRA-MAAPTPVSAYLhSATMVKAGIFLLFRFTPLLG-LSNM 272
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 114224241 257 MAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAI 301
Cdd:PRK12646 273 YIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAMV 317
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
145-342 2.90e-09

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 59.13  E-value: 2.90e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 145 AGMYFLFYTLTGSLPLLVALIYLQSSMGSLnllTINLWLKELPNSWSTNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAP 224
Cdd:PRK06521 165 AGFLYLLMAHAGALAILLAFGLLARESGSY---DFAAMRAAHLSPFWASLVFLLALFGFGAKAGLVPLHVWLPRAHPAAP 241
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 225 IAGSMVLAAVLLKLGGYGMMRITM-ILDPTTKSMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILV 303
Cdd:PRK06521 242 SHVSALMSGVMLKVAIYGILRVVFdLLGAPGWWWGVLVLALGAISAVLGVLYALAEHDLKRLLAYSTIENIGIIFVGLGL 321
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 114224241 304 --------QTPLGFMGATALM---IAHGLTSSMLFCLANSNYERIHSRTM 342
Cdd:PRK06521 322 amvfiaygMPLLAALALTAALyhlLNHALFKSLLFLGAGAVLHATGTRDM 371
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
115-354 3.78e-09

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 59.16  E-value: 3.78e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 115 LILFYILFEATLIPTLIIITRWGNQTERLNAGMYFLFYTLTGSLPLLVALIYLQSSMGSLN---LLTINLWLKElpNSWS 191
Cdd:PRK12647 117 LITLFVFWELTSITSFLLIGFNHEREAARRAALQALLVTGGGGLALLAGLILLGNVTGTYSlseLLASGDVIRE--HPLY 194
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 192 TNLLWMACIMAFmVKMPLYGLHLWLPKAhVEAPIAGSMVL-AAVLLKLGGYGMMRitmiLDPTTKSMAYPFLMLCLWG-- 268
Cdd:PRK12647 195 LAILLLVLGGAF-TKSAQFPFHFWLPNA-MEAPTPVSAYLhSATMVKAGIYLLAR----LNPVLGGTPLWQTILPLFGgl 268
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 269 -MIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILVQTPLGFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARG 347
Cdd:PRK12647 269 tMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLVAHSLYKGALFMVAGIIDHETGTRDITKLGG 348

                 ....*..
gi 114224241 348 LQTLLPL 354
Cdd:PRK12647 349 LRRAMPI 355
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
94-401 5.72e-09

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 58.06  E-value: 5.72e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  94 SYLSMLITLQMFLIMTFTATELILFyilFEATLIPTLIIITRWGNQtERLNAGMYFLFYTLTGSLPLLVALIYLQSSMGS 173
Cdd:PRK06525 117 AFLLLFIGAMAGLVYSSTLLGLLLF---FEITGLCSWALISYYQSP-KALRSALKALLITHIGSLGLYLAAATLFLQTGT 192
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 174 LNLLTINlwlkELPNSWSTnLLWMACIMAFMVKMPLYGLHLWLPKAhVEAPIAGSMVL-AAVLLKLGGYGMMRITMILDP 252
Cdd:PRK06525 193 FALSALS----GLHGSLKY-LVFLGILFAAWGKSAQLPFYSWLPDA-MEAPTPASAYLhAASMVKVGVYIFARAIQSMGP 266
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 253 TTKSMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAI---LVQTPLGFMGATALMIAHGLTSSMLFCL 329
Cdd:PRK06525 267 IPHVIGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLslaILGSRLALEGSIAYIFNHAFAKSLFFLV 346
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 114224241 330 ANSNYERIHSRTMLMARGLQTLLPLMTTWWLLASLNNLALPPSINLIGELLVTITSFSWSNITVILIGLNML 401
Cdd:PRK06525 347 AGALSYSCGTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIFAAGFELSVEYWILLPAMVL 418
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
75-323 1.03e-08

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 57.05  E-value: 1.03e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  75 LMIMASQHHLAKEPCFRKKSYLSMLITL--QMFLIMtftATELILFYILFEATLIPTLIIITRWGNQTERLNAGM-YFLF 151
Cdd:COG1007   85 LVLLLSRDYLERRGLLRGEFYALLLFATlgMMLMAS---ANDLLTLFLGLELLSLSLYVLVAFRRDDRRSSEAALkYFLL 161
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 152 YTLTGSLPLL-VALIYLQSsmGSLNLLTINLWLKELPNSwsTNLLWMACIM---AFMVKMPLYGLHLWLPKAHVEAPIAG 227
Cdd:COG1007  162 GALSSGFLLYgISLLYGAT--GSLNLAGIAAALAAGGAN--SPLLLLGLVLvlaGLAFKLSAVPFHMWTPDVYEGAPTPV 237
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 228 SMVLAAVLlKLGGYGM-MRITMI-LDPTTKSMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILVQT 305
Cdd:COG1007  238 TAFLATAP-KIAAFAAlLRLLVEaFPGLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGT 316
                        250
                 ....*....|....*...
gi 114224241 306 PLGFMGATALMIAHGLTS 323
Cdd:COG1007  317 PLGVSAALFYLLAYLFMN 334
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
111-327 1.31e-08

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 57.24  E-value: 1.31e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 111 TATELILFYILFEATLIPTLIIItrwGNQTERLN---AGMYFLFYTLTGSLPLLVALIYLQSSMGSLNLLTInlwLKELP 187
Cdd:PRK12644 124 TSDNLLLLYVFWELTTVLSFLLI---GHYAERAAsrrAALQALLVTTAGGLAMLVGIIILGQAAGTYRLSEL---LADPP 197
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 188 NSWSTNLLwMACIMAFMV-KMPLYGLHLWLPKAhVEAPIAGSMVL-AAVLLKLGGYGMMRITmildP---TTKSMAYPFL 262
Cdd:PRK12644 198 TGPAVSVA-VVLILVGALsKSAIVPFHFWLPGA-MAAPTPVSAYLhAAAMVKAGIYLVARLA----PgfaDVPVWRPTVL 271
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 114224241 263 MLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILVQTPLGFMGATALMIAHGLTSSMLF 327
Cdd:PRK12644 272 VLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLAMLLAHALFKAALF 336
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
75-406 4.24e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 55.49  E-value: 4.24e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  75 LMIMASQHHLAKEPCFRKKSYLSMLITLQMFLIMTftATELILFYILFEATLIPTLIIITRWGNQTERLNAGMYFLFYTL 154
Cdd:PRK08376 105 LAVLYSISYMKHDTGLDKYYTLILLLELGMLGMAI--TGDLFNFFVFLEIMSIASYALVAFRNDTWEAIEAGIKYMFVGS 182
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 155 TGSLPLLVALIYLQSSMGSLNLLTINLWLKElpNSWSTNLLWMAC-IMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLaa 233
Cdd:PRK08376 183 LASSMVLLGIALLYGQYGTLNMAYLAVKMSE--NPTVVAKIALALfIAGLAMKSGAVPVHMWLPDAYPAAPSSISAML-- 258
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 234 VLLKLGG-YGMMRITM-ILDPTTKSMAYPFLMLCL--WGMIMTSSICLRQTDLKSLIAYSSVSH---------MALVIVA 300
Cdd:PRK08376 259 LVIKQAGlYALARVLFsIYGPAINLATVGWVIIILgcLTMFVGVAMAVVQKDVKRLLAYHSVSQigymllglgVGLAALG 338
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 301 ILVQTPLGFM---GATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARGLQTLLPLMTTWWLLASLNNLALPPSINLIG 377
Cdd:PRK08376 339 DPAMASYGEIalaGGIYHIVNHALYKALLFLTAGAVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFAS 418
                        330       340       350
                 ....*....|....*....|....*....|
gi 114224241 378 ELLVTITSFSWSNI-TVILIGLNMLITALY 406
Cdd:PRK08376 419 KWLIYESSALFNPIlGVIAMIGSVLTLASF 448
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
156-390 1.45e-07

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 53.68  E-value: 1.45e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 156 GSLPLLVALIYLQSSMGSLNLLTINLWLKELPNSwstNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235
Cdd:PRK08042 146 GTLLLAIACWLLWQRYGTLDLRLLDMRMQQLPLG---SDIWLLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTVV 222
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 236 LKLGGYGMMRITMIldpttkSMAYPF---LMLCLWGMImTSSI----CLRQTDLKSLIAYSSVSHMALV-------IVAI 301
Cdd:PRK08042 223 MKIGLLGILTLSLL------GGNAPLwwgVALLVLGMI-TAFVgglyALMEHNIQRLLAYHTLENIGIIllglgagVTGI 295
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 302 LVQTP----LGFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARGLQTLLPLMTTWWLLASLNNLALPPSINLIG 377
Cdd:PRK08042 296 ALEQPaliaLGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGFAG 375
                        250
                 ....*....|...
gi 114224241 378 ELLVTITSFSWSN 390
Cdd:PRK08042 376 EWVIYQSFFKLSN 388
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
95-411 1.80e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 53.28  E-value: 1.80e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  95 YLSMLITLQMFLIMTftaTELILFYILFEATLIPTLIIITRWGNQTERLNAGMYFLFYTLTGSLPLLVALIYLQSSMGSL 174
Cdd:PRK06589 121 FFNLTILIGVLIALS---SDLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVILIYTKTGNL 197
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 175 NLLTINLWlkelpnSWSTNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMI---LD 251
Cdd:PRK06589 198 DFVSGGLF------SKNQSIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALLHAVIVVKTGLFCIYKILLYifgLS 271
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 252 PTTK--SMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILVQTPLGFMGATALMIAHGLTSSMLFCL 329
Cdd:PRK06589 272 YLQRifAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLVSHSFAKICLFYS 351
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 330 ANSNYERIHSRTMLMARGLQTLLPLMTTWWLLASLNNLALPPSINLIGELLVTITSFSWSNITVILIGLNMLI--TALYS 407
Cdd:PRK06589 352 MGSIYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVMLVVIasSILSA 431

                 ....
gi 114224241 408 LYML 411
Cdd:PRK06589 432 LYLL 435
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
95-323 1.09e-06

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 50.97  E-value: 1.09e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  95 YLSMLITLQMFLIMTftATELILFYILFEATLIPTLIIITRWGNQTERLNAGM-YFLFYTLTGSLPLL-VALIYLQSsmG 172
Cdd:PRK05777 107 LLVLFALLGMMVMVS--ANDLLTLFLGLELLSLPLYALAALRRDRRRSLEAAIkYFVLGALASGFLLYgMSLLYGAT--G 182
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 173 SLNLLTInlwLKELPNSWSTNLLWMACIMAFMV----KMPLYGLHLWLPKAHVEAPIAGSMVLAAVLlKLGGYGM-MRIT 247
Cdd:PRK05777 183 SLSFAGI---AKALADGSGNSLLLLFGLVFLLVglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAP-KIAAFAVlLRLL 258
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 114224241 248 MILDPTTKSMAYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILVQTPLGFMGATALMIAHGLTS 323
Cdd:PRK05777 259 VVAFGGLSEDWQQVLAiIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFMT 335
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
95-354 2.56e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 49.83  E-value: 2.56e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  95 YLSMLITLQMFLIMTFTATELILFyILFEATLIPTLIIITRWGNQTERLNAGMYFLFYTLTGSLPLLVALIYLQSSMGSL 174
Cdd:PRK12649 114 YQYLLLFMGSMIGMVFSGNTIQLF-IFWELTSITSFMLIGYWRHRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTY 192
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 175 NLLTINLWLKELPNSWSTNLLWMACIMAFM---VKMPLYGLHLWLPKAhVEAPIAGSMVL-AAVLLKLGGYGMMRITMIL 250
Cdd:PRK12649 193 DIATILQDSELIENIKGHPLFLITLILIFIgaaAKSAQGPFYIWLPNA-MEAPTPVSAFLhSATMVKAGVYLVARIHPIF 271
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 251 DPTTKSmaypFLMLCLWGMI---MTSSICLRQTDLKSLIAYSSVSHMALVIVAILVQTP----LGFMGATALMIAHGLTS 323
Cdd:PRK12649 272 SGTEAW----FILVSGTGMItmvLAGFLAFRQTDIKAILAYSTISQLAYLMTMYGYTTYhepgLGVAAATFHLLNHATFK 347
                        250       260       270
                 ....*....|....*....|....*....|.
gi 114224241 324 SMLFCLANSNYERIHSRTMLMARGLQTLLPL 354
Cdd:PRK12649 348 ACLFLVAGIVAHEAATRDIRKLGGLRKEMPI 378
PRK12666 PRK12666
putative monovalent cation/H+ antiporter subunit D; Reviewed
137-330 4.85e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237166 [Multi-domain]  Cd Length: 528  Bit Score: 48.69  E-value: 4.85e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 137 GNQTERLNAGMYFLFYTLTGSLPLLVALIYLQSSMGSLNLLTINLWLKELPNSwSTNLLWMACIM---AFMVKMPLYGLH 213
Cdd:PRK12666 152 GSGRARVRAGLHYVAINLVASSLFLIGVGLIYGVTGTLNMADLAQRIAQLPAA-DRALLEAGAALllvVFLIKAAMWPLN 230
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 214 LWLPKAHVEA--PIAGsmvLAAVLLKLGGYGMMRI-TMILDPTTKSMAYPFLMLCLWGMIMTSSI----CLRQTDLKSLI 286
Cdd:PRK12666 231 FWLPPAYAAAsaPVAA---LFAIMTKVGIYAILRLsTLLFGPEAGASAGFGQDWLLPGGLATLAFgaigVLAAQRLRRLA 307
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 114224241 287 AYSSVSHMALVIVAILVQTPLGFMGATALMIAHGLTSSMLFCLA 330
Cdd:PRK12666 308 AYLVLVSSGTLLAAIGLGNPAATAAALYYLVHSTLAAAALFLLA 351
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
91-301 1.87e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 47.27  E-value: 1.87e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  91 RKKSYLSMLITLQMFLIMTFTATELILFYILFEATLIPTLIIITRWGNQTERLNAGMYFLFYTLTGSLPLLVALIYLQSS 170
Cdd:MTH00208 136 NKNAFFRLLIIFLLNMLILTSSNNLFLLFIGWEGVGFLSFLLISWWTTRNDANSSALQAVIYNRIGDIGIILFLSLSLIN 215
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 171 MGSLNLLTINLWlkELPNSWSTNLLWMACIMAFMVKMPLYGLHLWLPKAhVEAPIAGS-------MVLAAVLLklggygM 243
Cdd:MTH00208 216 FNSWNLNEILSL--NNSNSFLINILLFGILLAAAGKSAQFGLHPWLPAA-MEGPTPVSallhsstMVVAGVFL------L 286
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 114224241 244 MRITMILDPTTKsmaypFLMLCLW----GMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAI 301
Cdd:MTH00208 287 IRTSPLISNSPW-----FLSLCLIlgslTALFAASTAISQHDIKKIIAYSTTSQLGLMVVAI 343
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
59-304 1.05e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 44.56  E-value: 1.05e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  59 DPLSSPLLMLTMWLLPLMIMASQHHLAKEPCF-RKKSYLSMLITLQMFLImtfTATELILFYILFEATLIPTLIIITRWG 137
Cdd:MTH00032  79 DTLSVTMLLVISSISTLVHIYSTSYMSDDPHVpRFLCYLSLFTFLMMVLV---TSDNYLQLFIGWEGVGVCSYLLVAFWT 155
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 138 NQTERLNAGMYFLFYTLTGSLPLLVALIYLQSSMGSLNLLTIN----------------LWLKELPNSWSTN--LLWMAC 199
Cdd:MTH00032 156 TRIQANKAAIKAIVVNRVGDVGVILGMVLIYKTIGSLDFLTFNggsvgsgimdrgyyggGAYESPLAPFAIIgiLLLIGC 235
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 200 IMafmvKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITmildPTTKSMAYPFLMLCLWGMI---MTSSIC 276
Cdd:MTH00032 236 IG----KSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSF----PLFEKAPLTLLIITIFGALtafFAATVG 307
                        250       260
                 ....*....|....*....|....*...
gi 114224241 277 LRQTDLKSLIAYSSVSHMALVIVAILVQ 304
Cdd:MTH00032 308 LVQNDLKKVIAYSTCSQLGYMVLIIGIE 335
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
91-300 1.93e-04

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 43.91  E-value: 1.93e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  91 RKKSYLSMLITLQMFLImtfTATELILFYILFEATLIPTLIIITRWGNQTERLNAGMYFLFYTLTGSLPLLVALIYLQSS 170
Cdd:MTH00020 112 RFMSYLSLFTFLMVVLV---TSDNYLQLFIGWEGVGLCSYLLINFWLTRIEANKAAIKAMLVNRVGDIGLLLAMFLLWDR 188
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 171 MGSLNLLTInlwLKELPNSWSTNLLWMaCIMAF---MVKMPLYGLHLWLPKAH-----VEAPI-AGSMVLAAVLLklggy 241
Cdd:MTH00020 189 FGSLDFSSV---FNMVVSAPSSDITLI-CLFLFigaVGKSAQLGLHTWLPDAMegptpVSALIhAATMVTAGVFL----- 259
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 114224241 242 gMMRITMILDpttksmaYPFLMLCLWGMI------MTSSICLRQTDLKSLIAYSSVSHMALVIVA 300
Cdd:MTH00020 260 -LIRSSPLFE-------QAPLALIIVTIVgsltvfFAATVGLVQNDLKKVIAYSTCSQLGYMVVA 316
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
99-327 3.68e-04

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 42.71  E-value: 3.68e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  99 LITLQMFLIMTftATELILFYILFEATLIPTLIIITRWGNQTERLNAGM-YFLFYTLTGSLpLLVALIYLQSSMGSLNLL 177
Cdd:MTH00196   1 MVALGILCLIS--SSNWLSVYLAIELQTLSLFILIAQNRGSGYSAEAGLkYFVLGALSSGL-FLFGCALLCGTTGGLHLS 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 178 TINLWL--KELPNSWSTNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPiagsMVLAAVLLKLGGYGMMRITMILDPTTK 255
Cdd:MTH00196  78 YINLVLnsGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAP----TKTTALLAIVPKLGIFSILVSIGLNVN 153
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 114224241 256 SmaypFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILVQTPLGFMGATALMIAHGLTSSMLF 327
Cdd:MTH00196 154 I----LLIGGLFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFESIQASLVYLFIYIIMSICVF 221
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
95-327 5.81e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 42.25  E-value: 5.81e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  95 YLSMLITLQMFLIMTFTATELILFYILFEATLIPTLIIITRWGNQTERLNAGMYFLFYTLTGSLPLLVALIYLQSSMGSL 174
Cdd:MTH00211 112 FFKYLLLFLIFMLILVSANNLFQLFIGWEGVGIMSFLLISWWYGRSDANTAALQAVIYNRIGDIGLLLSMVWLLLNLNSW 191
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 175 NLLTInlwlkeLPNSWSTNLLWMACIMAFMVKMPLYGLHLWLPKAhVEAPIAGS-------MVLAAVLLklggygMMRIT 247
Cdd:MTH00211 192 EISQL------FILNLDLTLFLLGLLLAAMGKSAQFGFHPWLPSA-MEGPTPVSallhsstMVVAGVFL------LIRLS 258
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 248 MILDPTTKSMAypfLMLCLWG--MIMTSSICLRQTDLKSLIAYSSVSHMALVIVAI-LVQTPLGFMgataLMIAHGLTSS 324
Cdd:MTH00211 259 PLFQNNQLILG---AVLLLGAltMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLgLNQPQLAFL----HICTHAFFKA 331

                 ...
gi 114224241 325 MLF 327
Cdd:MTH00211 332 MLF 334
PRK06591 PRK06591
putative monovalent cation/H+ antiporter subunit D; Reviewed
91-333 7.41e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235837 [Multi-domain]  Cd Length: 432  Bit Score: 41.69  E-value: 7.41e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  91 RKKSYLSMLITLQMFLIMTFTATELILFYILFEATLIPTLIIITRWGNQTERLNAGMYFLFYTLTGSLpLLVALIYLQSS 170
Cdd:PRK06591 113 RKSLFYGILLFAHTGYLGMIATNDFFNLYVFIEISALSSYVLIASGNNPKSLIGAFDYLIMGSIGATL-ILIAIGFLLSI 191
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 171 MGSLNLLTINLWLKELPNSWSTNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRIT-MI 249
Cdd:PRK06591 192 TGSLNMTDIAAYLQEHTNSRIITIAIGFFLIGAILKTAFFPMHFWMMRAYNNTASVILVYLAGISTIIGIYIIYKFTyII 271
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 250 LDPTTKSMAYPFLM--LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIvaILVQTPLGFMGATALMIAHGLTSSMLF 327
Cdd:PRK06591 272 IGYETIKTAITNFIrpIALATLIIAPYFAYQAKNFKNIIIYSCFTQIGYVF--LLYVTENGIIILPSLLLADSINKIALF 349

                 ....*.
gi 114224241 328 CLANSN 333
Cdd:PRK06591 350 LIDAYN 355
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
91-327 1.02e-03

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 41.31  E-value: 1.02e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241  91 RKKSYLSMLITLQMF-LIMTFTATELILFYILFEATLIPTLIIITRWGNQTErlnAGMYFLFYTLTGSLPLLVALIYLQS 169
Cdd:PRK06459  69 HYGKWLSSLYILTILgMAIVLTSDNYLLFLAGWEIMTIPSYVAIALTKKNKR---PAFVFMAFGELSTVLILAGFAWAFI 145
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 170 SMGSLNLltinlwlkelpNSWSTNLLWMACIMAFMVKMPLYGLHL--WLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRIT 247
Cdd:PRK06459 146 ISGTTNF-----------SYLPSPVPLILASFGFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTLMGVYGILKMT 214
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114224241 248 MILDPTTKSMAYPFLMLCLWGMIMTSSICLRQTD-LKSLIAYSSVSHMALVIVAI--------LVQTPLGFMGATALM-- 316
Cdd:PRK06459 215 ILTQTIPIGYFGLTILAIGAFSILFGALYAYVSEnVKGLLAFSTIENNGAILVALglymvtkqLITSIEHFSLITVILys 294
                        250
                 ....*....|.
gi 114224241 317 IAHGLTSSMLF 327
Cdd:PRK06459 295 FAHSVAKTGLF 305
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH