NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|142886730|gb|ABO92872|]
View 

NADH dehydrogenase subunit 5, partial (mitochondrion) [Sphingonotus yenchihensis]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-213 4.79e-71

NADH dehydrogenase subunit 5; Provisional


:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 225.79  E-value: 4.79e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLYFISTGL 80
Cdd:MTH00165 308 LFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGL 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730  81 TASYSFRLFYYSMMGDNNFYSSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPIPYMIVLPWYLKFLTMFVVILGSY 160
Cdd:MTH00165 388 TVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGW 467

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 142886730 161 LGYLISDFDYFYGLFSLSFLSFVSFIGSMWFMPFLSTSYVSYLPLKVGHNLTS 213
Cdd:MTH00165 468 LGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLK 520
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-213 4.79e-71

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 225.79  E-value: 4.79e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLYFISTGL 80
Cdd:MTH00165 308 LFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGL 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730  81 TASYSFRLFYYSMMGDNNFYSSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPIPYMIVLPWYLKFLTMFVVILGSY 160
Cdd:MTH00165 388 TVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGW 467

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 142886730 161 LGYLISDFDYFYGLFSLSFLSFVSFIGSMWFMPFLSTSYVSYLPLKVGHNLTS 213
Cdd:MTH00165 468 LGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLK 520
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 84-213 9.18e-27

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 100.70  E-value: 9.18e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730   84 YSFRLFYYSMMGDNNFYSSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPIPYMIVLPWYLKFLTMFVVILGSYLGY 163
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 142886730  164 LISDFDYFYGLFSLSFlSFVSFIGSMWFMPFLSTSYVSYLPLKVGHNLTS 213
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAK 129
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-165 7.08e-20

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 87.13  E-value: 7.08e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730   1 LFMCAGSMIHNLkDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-IVCLSWVNFLIFFLYFISTG 79
Cdd:COG1009  340 LFLGAGSVIHAT-GTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAF 418

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730  80 LTASYSFRLFYYSMMGDNNFYSSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWL---------IFPIPYMIVLPWYLKFL 150
Cdd:COG1009  419 LTAFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNAL 498

                        170
                 ....*....|....*
gi 142886730 151 TMFVVILGSYLGYLI 165
Cdd:COG1009  499 PLLLSLLGIALGYLL 513
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-213 4.79e-71

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 225.79  E-value: 4.79e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLYFISTGL 80
Cdd:MTH00165 308 LFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGL 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730  81 TASYSFRLFYYSMMGDNNFYSSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPIPYMIVLPWYLKFLTMFVVILGSY 160
Cdd:MTH00165 388 TVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGW 467

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 142886730 161 LGYLISDFDYFYGLFSLSFLSFVSFIGSMWFMPFLSTSYVSYLPLKVGHNLTS 213
Cdd:MTH00165 468 LGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLK 520
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-207 2.70e-43

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 152.49  E-value: 2.70e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLYFISTGL 80
Cdd:MTH00209 304 LFICAGNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSL 383

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730  81 TASYSFRLFYYSMMGDNNFYSSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPIPYMIVLPWYLKFLTMFVVILGSY 160
Cdd:MTH00209 384 TAAYSMRLSYFSLWGPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVL 463

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 142886730 161 LGYLISDfdyfYGLFSLSFLSFVSFIGSMWFMPFLSTSYVSYLPLKV 207
Cdd:MTH00209 464 LMYMVLK----KNFFLIKGYKVNYFLSQMWFLPDLSSQPVNKFTMKL 506
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-213 1.25e-40

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 145.29  E-value: 1.25e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLYFISTGL 80
Cdd:MTH00207 308 LFVCAGSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATAL 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730  81 TASYSFRLFYYSMMGDNNFYSSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPIPYMIVLPWYLKFLTMFVVILGSY 160
Cdd:MTH00207 388 TAAYSTRFTLAVLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGAL 467

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 142886730 161 LGYLISDFDYFYGLFSLSFLSFVSFIGSMWFMPFLSTSYVSYLPLKVGHNLTS 213
Cdd:MTH00207 468 LAWLFTTPNITKTPLLINNPLSHFASCLMWFLVPLSSQFIMSTPMNLSHNYLK 520
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-213 1.75e-38

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 139.21  E-value: 1.75e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLYFISTGL 80
Cdd:MTH00151 305 LFLCAGSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGL 384

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730  81 TASYSFRLFYYSMMGDNNFYSSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPIPYMIVLPWYLKFLTMFVVILGSY 160
Cdd:MTH00151 385 TALYSARLSFCLVWGSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVILLGLF 464

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 142886730 161 LGYLISDFDYFYGLFSLSflsfVSFIGSMWFMPFLSTSYVSYLPLKVGHNLTS 213
Cdd:MTH00151 465 LSFGFWDSGFSSSKMVKL----SFFFSSMWFLSPLSSQPLKSLSLKLSNSSMK 513
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-158 7.17e-32

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 121.50  E-value: 7.17e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLYFISTGL 80
Cdd:MTH00108 339 LFMCSGSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSL 418

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730  81 TASYSFRLFYYSMMGDNNFYSSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFP--IPYMiVLPWYLKFLTMFVVILG 158
Cdd:MTH00108 419 TAAYSTRIIFFALLGQPRFPPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPttIPQM-TMPLYLKLTALAVTILG 497
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-212 1.92e-31

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 120.06  E-value: 1.92e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLYFISTGL 80
Cdd:MTH00211 333 LFMCSGSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSL 412

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730  81 TASYSFRLFYYSMMGDNNFYSSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPIPYMIV-LPWYLKFLTMFVVILGS 159
Cdd:MTH00211 413 TAAYSFRLIFLSLGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPEILsLPFLLKLMPLLVTIVGL 492

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 142886730 160 YLGylisdFDYFYGLFSLSFLSFVSFIGSMWFMPFLSTSYVSYLPLKVGHNLT 212
Cdd:MTH00211 493 LLG-----LELVNLTHKQLKTSTLSFSNMLGYYPPIIHRLLPKLSLKWGQTLS 540
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 1-162 4.40e-31

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 119.11  E-value: 4.40e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLYFISTGL 80
Cdd:MTH00004 338 LFLCSGSIIHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSF 417

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730  81 TASYSFRLFYYSMMGDNNFYSSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPI-PYMIVLPWYLKFLTMFVVILGS 159
Cdd:MTH00004 418 TAAYSLRMILLVQTGFPRTPPTTPINENTPTIINPITRLALGSILAGLLISSTILPTkTPPMTMPTTTKLAALIVTILGI 497


                 ...
gi 142886730 160 YLG 162
Cdd:MTH00004 498 LLA 500
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 1-203 7.48e-31

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 118.53  E-value: 7.48e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLYFISTGL 80
Cdd:MTH00208 365 LFLCSGSIIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLL 444

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730  81 TASYSFRLFYYSMMGDNNFYSSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPIPyMIVLPWYLKFLTMFVVILGSY 160
Cdd:MTH00208 445 TAVYSFRIIFFCFLNNPSFSPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLP-PLTLPLILKSLPLIVTIIGAA 523

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 142886730 161 LGYLISdfdYFYGLFSLSFLSFvSFIGSMWFMPFLSTSYVSYL 203
Cdd:MTH00208 524 FSFSFL---LSLSSNPINSNFF-SFLSNQWFFVNISHSIIISF 562
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 1-166 4.44e-29

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 113.46  E-value: 4.44e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLYFISTGL 80
Cdd:MTH00066 336 LFLCSGSIIHSLNDEQDIRKMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSF 415

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730  81 TASYSFRLFYYSMMGDNNFYSSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPIPYMIV-LPWYLKFLTMFVVILGS 159
Cdd:MTH00066 416 TAVYSFRIIYFSSMKFPRSLPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMKPQILtMPTFMKLAALLVTLLGL 495


                 ....*..
gi 142886730 160 YLGYLIS 166
Cdd:MTH00066 496 LIALDLA 502
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 1-95 2.65e-27

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 108.38  E-value: 2.65e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLYFISTGL 80
Cdd:MTH00137 344 LFLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSF 423

                         90
                 ....*....|....*
gi 142886730  81 TASYSFRLFYYSMMG 95
Cdd:MTH00137 424 TAVYSLRVVFFVSMG 438
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 84-213 9.18e-27

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 100.70  E-value: 9.18e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730   84 YSFRLFYYSMMGDNNFYSSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPIPYMIVLPWYLKFLTMFVVILGSYLGY 163
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 142886730  164 LISDFDYFYGLFSLSFlSFVSFIGSMWFMPFLSTSYVSYLPLKVGHNLTS 213
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAK 129
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 1-212 3.92e-23

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 96.62  E-value: 3.92e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLYFISTGL 80
Cdd:MTH00210 340 LFLSAGSVIHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALL 419

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730  81 TASYSFRLFYYSMMGDNNFYSSYFF--DDKSYFISFGMIGLLFVAVFGGS-----FLSWLIFPIpymivLPWYLKFLTMF 153
Cdd:MTH00210 420 TAFYSIRLIYLTFITNTNSKKEVFIgvHESSWNITFPLLLLAFGSIFVGYlgkevVLSNVIPPI-----VPNSIKMIPLL 494

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 142886730 154 VVILGSYLGYLISDFDYFY------GLFSLSFLSFVSFIGSMWFMPFLSTSYVSYLPLKVGHNLT 212
Cdd:MTH00210 495 FSLLGALLAFVIYNSMVFLikisrrGVSIRLYHVIYTFLNSAWQFNYVINHFIVKNIWKFGHLIT 559
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 1-212 6.38e-21

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 90.14  E-value: 6.38e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLYFISTGL 80
Cdd:MTH00020 339 LFLSAGSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALL 418

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730  81 TASYSFRLFYYSMMGDNNFYSSYFFD--DKSYFISFGMIGLLFVAVFGGSFLSWLI--FPIPYMIVLPWYLKFLTMFVVI 156
Cdd:MTH00020 419 TAFYSIRLIYLTFLSNTNLKKAVFFHlhEGDWNLLLPLGILALGSIFVGYLAKEMIwsFQITLPPIVPLSIKLLPVFLSL 498

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 142886730 157 LGSYLGYLISDF--DYFYGLFSLSFLSFVSFIGSMWFMPFLSTSYVSYLPLKVGHNLT 212
Cdd:MTH00020 499 GGIGLVIILYFYssKTFRVPFSFIGRNSYTFLGSAWQFNYILNYFLIKKIWKGGHLIS 556
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 1-165 2.44e-20

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 88.29  E-value: 2.44e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEiVCLSWVNFLIFFLYFISTGL 80
Cdd:PRK06590 346 LFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILE-AAFANGHINLFVAGLVGAFL 424

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730  81 TASYSFRLFYYSMMGDNnfyssyffDDKSY-------FISFGMIGLLFVAVFGG-----SFLSWLIFP-----IPYMIVL 143
Cdd:PRK06590 425 TAFYSFRLIFLVFHGKE--------KEKIHhphespaVMTLPLIVLAVLSVFAGalivpPFLGVLPLTtelahGEAEHHL 496

                        170       180
                 ....*....|....*....|..
gi 142886730 144 PWYLKFLTMFVVILGSYLGYLI 165
Cdd:PRK06590 497 PVWVALLPLVVALAGIALAWLL 518
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-165 7.08e-20

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 87.13  E-value: 7.08e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730   1 LFMCAGSMIHNLkDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-IVCLSWVNFLIFFLYFISTG 79
Cdd:COG1009  340 LFLGAGSVIHAT-GTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAF 418

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730  80 LTASYSFRLFYYSMMGDNNFYSSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWL---------IFPIPYMIVLPWYLKFL 150
Cdd:COG1009  419 LTAFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNAL 498

                        170
                 ....*....|....*
gi 142886730 151 TMFVVILGSYLGYLI 165
Cdd:COG1009  499 PLLLSLLGIALGYLL 513
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
1-96 3.90e-16

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 76.22  E-value: 3.90e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730   1 LFMCAGSMIHNLKD--------SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSwvNFLIFF 72
Cdd:PRK07376 356 LFLGSGSVIHGMEEvvghdpvlAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA--NPALWF 433

                         90       100
                 ....*....|....*....|....
gi 142886730  73 LYFISTGLTASYSFRLFYYSMMGD 96
Cdd:PRK07376 434 VGFLTAGMTAFYMFRMYFLTFEGE 457
ndhF CHL00025
NADH dehydrogenase subunit 5
 1-109 8.14e-11

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 60.68  E-value: 8.14e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730   1 LFMCAGSMIHNL--------KDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDlilEIVCLSWVNFLIF- 71
Cdd:CHL00025 356 LFLGSGSVIHSMepivgyspDKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKD---EILNDSWLYSPIFa 432

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 142886730  72 FLYFISTGLTASYSFRLFYYSMMGDNNFYSSYFFDDKS 109
Cdd:CHL00025 433 IIAWSTAGLTAFYMFRIYLLTFEGHLRVHFQNYSGKKN 470
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-77 1.19e-10

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 59.63  E-value: 1.19e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 142886730    1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLYFIS 77
Cdd:pfam00361 215 LFLCAGSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 1-190 9.30e-10

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 57.66  E-value: 9.30e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730   1 LFMCAGSMIHNLK-DSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCL---------------- 63
Cdd:MTH00032 355 LFLSAGSVIHSTTvDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILELTYSgrnmgipfgssllkiq 434

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730  64 --------------------SWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNNFYSSYFFDDKSYFISFGMIGLLFVA 123
Cdd:MTH00032 435 gdigikkddrgsiggpegypSRGSAFAFWLGTVAALLTAFYSIRLVYITFIISPNSPKESLISSHINIVDKRVLTVLSLL 514

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 142886730 124 VFGGSFLSWLIFPI-----------PYMIVLPWYLKFLTMFVVILGSYLGYLISDFDYFYGLFSLSFLSFVSFIGSMW 190
Cdd:MTH00032 515 CFGAIFVGYLIQDIligdiehpivpPLIKVMPTLMGLFGMGLCLWAQKGTREGELYWGFDPIGPSFLLSIYSFLGGAW 592
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-91 3.42e-08

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 52.84  E-value: 3.42e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730   1 LFMCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVcLSWVNFLIFFLYFISTGL 80
Cdd:COG0651  340 LFLAAGAIERATG-TRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAA-LEAGAWLLAAVLLLSSLL 417

                         90
                 ....*....|.
gi 142886730  81 TASYSFRLFYY 91
Cdd:COG0651  418 TLAYFVRIFGR 428
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-90 7.81e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 45.73  E-value: 7.81e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730   1 LFMCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSwvNFLIFFLY-FISTG 79
Cdd:PRK12667 363 LFLASGVFIHAAG-TRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLES--GFYLPALVlLIASA 439

                         90
                 ....*....|.
gi 142886730  80 LTASYSFRLFY 90
Cdd:PRK12667 440 ISLVGYFRAWY 450
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-95 1.85e-05

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 44.69  E-value: 1.85e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730   1 LFMCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILeiVCLSWVNFLIFFLYFISTGL 80
Cdd:COG1008  343 LFLLVGVLYDRTH-TRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVL--LGAFQVNPWLAILAALGLIL 419

                         90
                 ....*....|....*
gi 142886730  81 TASYSFRLFYYSMMG 95
Cdd:COG1008  420 TAAYLLWMYQRVFFG 434
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-95 2.15e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 44.48  E-value: 2.15e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730   1 LFMCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK-DLILEIVCLSWVNFLIFFLyfISTG 79
Cdd:PRK08375 339 LFLAAGAIEVTYG-TRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKwYLVVGAVEAGQWLVLAVLL--ASSL 415

                         90
                 ....*....|....*.
gi 142886730  80 LTASYSFRLFYYSMMG 95
Cdd:PRK08375 416 LALLYFLRIWYRAFFG 431
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 1-191 3.25e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 43.75  E-value: 3.25e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLYFISTGL 80
Cdd:MTH00095 292 LFMQVGYLIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFL 371

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730  81 TASYSFRLFYYSMMGDNNFYSSYFFDDKSYFISFGMIgllfvaVFGGSFLSWLIFPIPYMIVLPWYLKFLT----MFVVI 156
Cdd:MTH00095 372 TFGYSYRLWKSFFLSFSKVVNVYSSSVLMNFLSLMLV------FFSVFFLWWLNFNLLNLPSLFLYLDFYVplfyLFMIM 445

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 142886730 157 LGSYLGYLISDFDYFYGLFSLSFLSFVSFIGSMWF 191
Cdd:MTH00095 446 LFSFFFFKLLFKELKYKFFVDYFAKNVIYKLKNLK 480
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 1-82 8.30e-05

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 42.59  E-value: 8.30e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730   1 LFMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSkdlILEIVCLSWVNFLIFFLYFIST-G 79
Cdd:PRK07390 349 LFMSVGSIILT-TITQDLTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWA---LLRLADGLWAVSPWLVGVLLLVnA 424


                 ...
gi 142886730  80 LTA 82
Cdd:PRK07390 425 LTA 427
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 1-59 1.45e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 42.03  E-value: 1.45e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 142886730   1 LFMCAGSMIHNLKDsQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 59
Cdd:PRK08667 349 LFLTAGSVVHATGT-RNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYE 406
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 1-96 1.80e-04

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 41.73  E-value: 1.80e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730   1 LFMCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILeiVCLSWVNFLIFFLYFISTGL 80
Cdd:PRK05846 345 LFLLVGVLYDRLH-TRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLIL--LGSFQVNPVIAFIATTGLIL 421

                         90
                 ....*....|....*.
gi 142886730  81 TASYSFRLFYYSMMGD 96
Cdd:PRK05846 422 AAVYSLWLYQRVMFGP 437
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
1-58 4.86e-04

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 40.26  E-value: 4.86e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 142886730   1 LFMCAGSMIHNLKDSqDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 58
Cdd:PRK12668 308 LFMSAGAVLYRTGTE-KLTELGGLYRSMPLTALFCLVGALSISAFPLFSGFVSKSMII 364
PRK12650 PRK12650
DUF4040 family protein;
1-59 5.45e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 40.41  E-value: 5.45e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 142886730   1 LFMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 59
Cdd:PRK12650 340 LFMLIGVVDHQ-AGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLT 397
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-95 7.26e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 39.70  E-value: 7.26e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730   1 LFMCAGSMIHNLkDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLswVNFLIFFLYFISTGL 80
Cdd:PRK08376 367 LFLTAGAVIYET-GTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSAL--FNPILGVIAMIGSVL 443

                         90
                 ....*....|....*
gi 142886730  81 TASYSFRLFYYSMMG 95
Cdd:PRK08376 444 TLASFVKVFHTAFFG 458
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-87 1.93e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 38.63  E-value: 1.93e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730   1 LFMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDL----ILEIVCLSWVNFLIFFLYFI 76
Cdd:PRK12648 339 LFMAAGIIDHE-TGTRDMRRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMffaeTLDTHLLGSLDWLLPVAATL 417

                         90
                 ....*....|.
gi 142886730  77 STGLTASYSFR 87
Cdd:PRK12648 418 AGAFSVAYSLR 428
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 1-64 3.74e-03

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 37.95  E-value: 3.74e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 142886730   1 LFMCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLS 64
Cdd:PRK06521 355 LFLGAGAVLHATG-TRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSEWLLLQSLLSS 417
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-90 5.93e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 37.10  E-value: 5.93e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730   1 LFMCAGSmIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLS---WVNFLIFFLYFIS 77
Cdd:PRK06589 348 LFYSMGS-IYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQnqpWLSIIVMLVVIAS 426

                         90
                 ....*....|...
gi 142886730  78 TGLTASYSFRLFY 90
Cdd:PRK06589 427 SILSALYLLKILS 439
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-59 8.49e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 36.82  E-value: 8.49e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 142886730   1 LFMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 59
Cdd:PRK12647 327 LFMVAGIIDHE-TGTRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYE 384
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-100 8.90e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 36.47  E-value: 8.90e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886730   1 LFMCAGSMIHnLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEiVCLSWVNFLIFFLYFISTGL 80
Cdd:PRK07691 343 LFLLIGIMIK-ITGTTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVE-GTFEAGFYVSGIIVLLSSLL 420

                         90       100
                 ....*....|....*....|
gi 142886730  81 TASYSFRLFYYSMMGDNNFY 100
Cdd:PRK07691 421 VLYSVIKIFLKGFWGEPKGY 440
PRK12646 PRK12646
DUF4040 family protein;
1-59 9.04e-03

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 36.66  E-value: 9.04e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 142886730   1 LFMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 59
Cdd:PRK12646 356 LFMGVGIIDHE-AGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLD 413
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH