|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-339 |
3.00e-80 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 247.81 E-value: 3.00e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 1 MYNNSMKLLFLSLLMMGTILSISSNTWLGIWMGLEINLLSIIPLLTDSKNMVINESSIKYFIIQVMPSTMLLISILLIQM 80
Cdd:MTH00160 1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 81 KYMIWwekENIPSMMIMSSMMMKMGAAPFHFWLPEVMGSTSWMNCLILLTWQKIAPMMTLSYCIKMgSFTFTVILMGIIV 160
Cdd:MTH00160 81 NLMLF---NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINN-NFIIIIIILSAII 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 161 GAMGGLNQTSLRQIMAYSSISHLGWMISLMVVSENVWELYLYIYFLLNIAVIMMFSSMKLFFLNQAYLSGNLSMEIKFLV 240
Cdd:MTH00160 157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 241 MLSLLSLGGLPPMLGFLPKWIVIQSLIDNNMTTIMFLMVTFTTITLYYYMRISFSAIILSHMENSWLVSIKINKSKMILS 320
Cdd:MTH00160 237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316
|
330
....*....|....*....
gi 148491463 321 AMTTISMLGLICTSSLMLF 339
Cdd:MTH00160 317 FLSFISLFGLILSSLLFLL 335
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
24-280 |
3.09e-14 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 71.96 E-value: 3.09e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 24 SNTWLGIWMGLEINLLSIIPLLTD-SKNMVINESSIKYFIIQVMPSTMLLISILLI--------------QMKYMIWWEK 88
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGYwGKSPRSSEAGMKYFLLTLLGSSILLFGISLMynytgtlsfdelskALTGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 89 ENIPSMMIMSSMMMKMGAAPFHFWLPEVMGSTSWMNCLILL-TWQKIAPMMTL-------SYCIKMGSFTFTVILMGIIV 160
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 161 GAMGGLNQTSLRQIMAYSSISHLGWMISLMVV----SENVWELYLYIYFLLNIAVIMMFSSMKL----FFLNQAYLSGNL 232
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAgtiyGIQAAIFHLLTHGLFSAGLFLCAGSVIYrrvhTRNIRDYGGLAK 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 148491463 233 SMEIKFLVMLSLLSLGGLPPM-LGFLPKWIVIQSLIDNNMTTIMFLMVT 280
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPtAGFLGKFLILAAAVAASWIFLVLAGVV 289
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
8-338 |
3.69e-12 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 66.90 E-value: 3.69e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 8 LLFLSLLmmGTILSISSNTWLGIWMGLEINLLSIIPLLTDSKNMVI-NESSIKYFIIQVMPSTMLLISILLI-------- 78
Cdd:TIGR01770 107 LLLFALL--GIFLLVSSNDLLSIYLGLELQSLCFYVLAGLKRKSRFsTEAGLKYFILGAFSSGLLLFGISLIygftgsln 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 79 --QMKYMIWWEKENIPSMMIMSSMMMK-----MGAAPFHFWLPEVMGSTSWMNCLILLTWQKIA---PMMTLS-YCIKMG 147
Cdd:TIGR01770 185 feDLLLFLSNGMLNISLLLLGIVLILVgllfkLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFlYILFGF 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 148 SFTFTVIL-----MGIIVGAMGGLNQTSLRQIMAYSSISHLGW-MISLMVVSENVWE---LYLYIYFLLNIAVIMMFSSM 218
Cdd:TIGR01770 265 SEAWQIFLaiiafLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKavlFYIFIYALMSLGAFGVLSLL 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 219 KLFFLNQAYLSGNLSMEIK------FLVMLSLLSLGGLPPMLGFLPKWIVIQSLIDNNMTTIMFLMVTFTTITLYYYMRI 292
Cdd:TIGR01770 345 RSYKDEWIEYISDFAGLFKtnpilaILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 148491463 293 sfSAIILSHMENSWLVSIKINKSKMILSAMTTISMLGLICTSSLML 338
Cdd:TIGR01770 425 --VKVMYFDKPERRIPSNPQSKAQSLLLSISALFILFLGLFPSLIL 468
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
8-292 |
3.53e-10 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 60.90 E-value: 3.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 8 LLFLSLLmmGTILSISSNTWLGIWMGLEinLLSI-----IPLLTDSKNMviNESSIKYFIIQVMPSTMLL--ISIL---- 76
Cdd:COG1007 107 LLLFATL--GMMLMASANDLLTLFLGLE--LLSLslyvlVAFRRDDRRS--SEAALKYFLLGALSSGFLLygISLLygat 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 77 ----LIQMKYMIWWEKENIPSMMIMSSMMMK-----MGAAPFHFWLPEVMGSTSWMNCLILLTWQKIAPMMTL----SYC 143
Cdd:COG1007 181 gslnLAGIAAALAAGGANSPLLLLGLVLVLAglafkLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllVEA 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 144 IKMGSFTFTVILMGI-----IVGAMGGLNQTSLRQIMAYSSISHLGWM-ISLMVVSENVWE---LYLYIYFLLNI---AV 211
Cdd:COG1007 261 FPGLAADWQLLLAVLavlsmTVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPLGVSaalFYLLAYLFMNLgafAV 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 212 IMMFSSMKLFFLNQAYLSGnLSMEIKFLVMLSLLSLGGLP---PMLGFLPKWIVIQSLIDNNMTTIMFLMVTFTTITLYY 288
Cdd:COG1007 341 ILLLSRKGGEAEEIEDLAG-LARRSPLLALAMTIFLLSLAgipPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYY 419
|
....
gi 148491463 289 YMRI 292
Cdd:COG1007 420 YLRV 423
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-339 |
3.00e-80 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 247.81 E-value: 3.00e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 1 MYNNSMKLLFLSLLMMGTILSISSNTWLGIWMGLEINLLSIIPLLTDSKNMVINESSIKYFIIQVMPSTMLLISILLIQM 80
Cdd:MTH00160 1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 81 KYMIWwekENIPSMMIMSSMMMKMGAAPFHFWLPEVMGSTSWMNCLILLTWQKIAPMMTLSYCIKMgSFTFTVILMGIIV 160
Cdd:MTH00160 81 NLMLF---NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINN-NFIIIIIILSAII 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 161 GAMGGLNQTSLRQIMAYSSISHLGWMISLMVVSENVWELYLYIYFLLNIAVIMMFSSMKLFFLNQAYLSGNLSMEIKFLV 240
Cdd:MTH00160 157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 241 MLSLLSLGGLPPMLGFLPKWIVIQSLIDNNMTTIMFLMVTFTTITLYYYMRISFSAIILSHMENSWLVSIKINKSKMILS 320
Cdd:MTH00160 237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316
|
330
....*....|....*....
gi 148491463 321 AMTTISMLGLICTSSLMLF 339
Cdd:MTH00160 317 FLSFISLFGLILSSLLFLL 335
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
7-338 |
3.67e-48 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 165.38 E-value: 3.67e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 7 KLLFLSLLMMGTILSISSNTWLGIWMGLEINLLSIIPLLTDSKNMVINESSIKYFIIQVMPSTMLLISILLIQMKYMIW- 85
Cdd:MTH00112 6 KLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWd 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 86 --WEKENIPSMMIMSSMMMKMGAAPFHFWLPEVMGSTSWMNCLILLTWQKIAPMMTLSYCIKMGSFTFTVIL--MGIIVG 161
Cdd:MTH00112 86 itQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLaiLSTLIG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 162 AMGGLNQTSLRQIMAYSSISHLGWMISLMVVSENVWELYLYIYFLLNIAVIMMFSSMKLFFLNQAYLSGNLSMEIKFLVM 241
Cdd:MTH00112 166 GWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLM 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 242 LSLLSLGGLPPMLGFLPKWIVIQSLIDNNMTTIMFLMVTFTTITLYYYMRISF-SAIILSHMENSWLVSIKINKSKMILS 320
Cdd:MTH00112 246 LTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYiSTITLPPNTTNMMMKWRTKPKKNTLT 325
|
330
....*....|....*...
gi 148491463 321 AMTTISMLGLICTSSLML 338
Cdd:MTH00112 326 ATLTTLSTLLLPLSPMIL 343
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
10-340 |
2.85e-47 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 162.78 E-value: 2.85e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 10 FLSLLMMGTILSISSNTWLGIWMGLEINLLSIIPLLTDSKNMVINESSIKYFIIQVMPSTMLLISILL---IQMKYMIWW 86
Cdd:MTH00070 9 LLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTInawFTGEWTIMN 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 87 EKENIPSMMIMSSMMMKMGAAPFHFWLPEVMGSTSWMNCLILLTWQKIAPMMTLSYCIKMGSFTFTVI--LMGIIVGAMG 164
Cdd:MTH00070 89 MQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIImgLLSTLIGGWG 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 165 GLNQTSLRQIMAYSSISHLGWMISLMVVSENVWELYLYIYFLLNIAVIMMFSSMKLFFLNQAYLSGNLSMEIKFLVMLSL 244
Cdd:MTH00070 169 GLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTL 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 245 LSLGGLPPMLGFLPKWIVIQSLIDNNMTTIMFLMVTFTTITLYYYMRISFSAIILSH--MENSWLVSIKINKSKMILSAM 322
Cdd:MTH00070 249 LSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSpnTSNSKLYWRFKNKTNNLLSLT 328
|
330
....*....|....*...
gi 148491463 323 TTISMLGLICTSSLMLFY 340
Cdd:MTH00070 329 IILSLMLLPITPTILNLF 346
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
3-340 |
4.04e-47 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 162.79 E-value: 4.04e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 3 NNSMKLLFLSLLMMGTILSISSNTWLGIWMGLEINLLSIIPLLTDSKNMVINESSIKYFIIQVMPSTMLLISILLIQMKY 82
Cdd:MTH00041 2 NRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 83 ---MIWWEKENIPSMMIMSSMMMKMGAAPFHFWLPEVMGSTSWMNCLILLTWQKIAPMMTLSYCIKMGSFTFTVIL--MG 157
Cdd:MTH00041 82 gswSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCgiLS 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 158 IIVGAMGGLNQTSLRQIMAYSSISHLGWMISLMVVSENVWELYLYIYFLLNIAVIMMFSSMKLFFLNQAYLSGNLSMEIK 237
Cdd:MTH00041 162 VLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISA 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 238 FLVMLSLLSLGGLPPMLGFLPKWIVIQSLIDNNMTTIMFLMVTFTTITLYYYMRISFSAIIL-----SHMENSWLVSIKI 312
Cdd:MTH00041 242 FLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTlfpqhSISLFSWRNSGNI 321
|
330 340
....*....|....*....|....*...
gi 148491463 313 NKSKMILSAMTTISMLGLICTSSLMLFY 340
Cdd:MTH00041 322 TVYGVILSILSSISILGLLLIPLFLSFL 349
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
8-295 |
5.50e-47 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 162.32 E-value: 5.50e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 8 LLFLSLLMMGTILSISSNTWLGIWMGLEINLLSIIPLLTDSKNMVINESSIKYFIIQVMPSTMLLISILLIQM---KYMI 84
Cdd:MTH00105 7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMysgQWTI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 85 WWEKENIPSMMIMSSMMMKMGAAPFHFWLPEVMGSTSWMNCLILLTWQKIAPMMTL---SYCIKMgSFTFTVILMGIIVG 161
Cdd:MTH00105 87 TKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILyqiSPSINP-NLLLTLAILSILIG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 162 AMGGLNQTSLRQIMAYSSISHLGWMISLMVVSENVWELYLYIYFLLNIAVIMMFSSMKLFFLNQAYLSGNLSMEIKFLVM 241
Cdd:MTH00105 166 GWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLIL 245
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 148491463 242 LSLLSLGGLPPMLGFLPKWIVIQSLIDNNMTTIMFLMVTFTTITLYYYMRISFS 295
Cdd:MTH00105 246 LTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYS 299
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
5-338 |
8.11e-44 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 153.50 E-value: 8.11e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 5 SMKLLFLSLLMMGTILSISSNTWLGIWMGLEINLLSIIPLLTDSKNMVINESSIKYFIIQVMPSTMLLISILLIQMKYMI 84
Cdd:MTH00144 4 PSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 85 WWEkenipSMMIMSSMMMKMGAAPFHFWLPEVMGSTSWMNCLILLTWQKIAPMMTLSYCIKMGSFTFTVILMGI---IVG 161
Cdd:MTH00144 84 WFS-----MSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVISVlsaLVG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 162 AMGGLNQTSLRQIMAYSSISHLGWMISLMVVSENVWELYLYIYFLLNIAVIMMFSSMKLFFLNQAyLSGNLSMEIKFLVM 241
Cdd:MTH00144 159 SIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDL-GSLKPSYKTGLSII 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 242 LSLLSLGGLPPMLGFLPKWIVIQSLIDNNMTTIMFLMVTFTTITLYYYMRISFSAIIlshmenSWLVSIKINKSKMILSA 321
Cdd:MTH00144 238 SLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL------SSSKSKKSNSSKVLNSS 311
|
330
....*....|....*..
gi 148491463 322 MTTISMLGLICTSSLML 338
Cdd:MTH00144 312 IISLNLLGGLLFLLLYL 328
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
9-328 |
8.61e-42 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 147.90 E-value: 8.61e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 9 LFLSLLMMGTILSISSNTWLGIWMGLEINLLSIIPLLTDSKNMVINESSIKYFIIQVMPSTMLLISILLIQMKYMIwwek 88
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYL---- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 89 ENIPSMMIMSSMMMKMGAAPFHFWLPEVMGSTSWMNCLILLTWQKIAPMMTLSYCIKMGSFTFTVILMGIIVGAMGGLNQ 168
Cdd:MTH00197 78 SLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMNQ 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 169 TSLRQIMAYSSISHLGWMISLMVVSENVWELYLYIYFLLNIAVIMMFSSMKLFFLNQAYLSGNLSMEIKFLVMLSLLSLG 248
Cdd:MTH00197 158 SNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLG 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 249 GLPPMLGFLPKWIVIQSLIDNNMTTIMFLMVTFTTITLYYYMRISFSAIILSHMENSWLVSIKINKSKMILSAMTTISML 328
Cdd:MTH00197 238 GLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFILLMMMLPLL 317
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
6-339 |
9.17e-42 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 148.58 E-value: 9.17e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 6 MKLLFLSLLMMGTILSISSNTWLGIWMGLEINLLSIIPLLTDSKNMVINESSIKYFIIQVMPSTMLLISILLIQMKYMIW 85
Cdd:MTH00200 5 ILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQW 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 86 WEKE---NIPSMMIMSSMMMKMGAAPFHFWLPEVMGSTSWMNCLILLTWQKIAPMMTLS--YCIKMGSFTFTVILMGIIV 160
Cdd:MTH00200 85 GISEmlgPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIqlAPALNSNILLLLGLLSVLV 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 161 GAMGGLNQTSLRQIMAYSSISHLGWMISLMVVSENVWELYLYIYFLLNIAVIMMFSSMKLFFLNQAYLSGNLSMEIKFLV 240
Cdd:MTH00200 165 GGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLL 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 241 MLSLLSLGGLPPMLGFLPKWIVIQSLIDNNMTTIMFLMVTFTTITLYYYMRISFSAIILS--HMENSWLVSIKINKSKMI 318
Cdd:MTH00200 245 GLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLspNQINMMSSWRTKSNSNLL 324
|
330 340
....*....|....*....|.
gi 148491463 319 LSAMTTISMLGLICTSSLMLF 339
Cdd:MTH00200 325 VGLLLLLSILGLPLTPQLLFL 345
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
8-300 |
5.26e-40 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 143.38 E-value: 5.26e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 8 LLFLSLLMMGTILSISSNTWLGIWMGLEINLLSIIPLLTDSKNMVINESSIKYFIIQVMPSTMLLISIlliQMKYMIWWE 87
Cdd:MTH00011 9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM---TMMWSFPSL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 88 KENIPSMMIMSSMMMKMGAAPFHFWLPEVMGSTSWMNCLILLTWQKIAPMMTLSYC--IKMGSFTFTVILMGIIVGAMGG 165
Cdd:MTH00011 86 LKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFtsHNILPMMTSMAAMSALAGGLGG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 166 LNQTSLRQIMAYSSISHLGWMISLMVVSENVWELYLYIYFLLNIAVIMMFSSMKLFFLNQAYLSGNLSMEIKFLVMLSLL 245
Cdd:MTH00011 166 MNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLL 245
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 148491463 246 SLGGLPPMLGFLPKWIVIQSLIDNNMTTIMFLMVTFTTITLYYYMRISFSAIILS 300
Cdd:MTH00011 246 SLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLS 300
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
9-295 |
4.29e-39 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 141.48 E-value: 4.29e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 9 LFLSLLMMGTILSISSNTWLGIWMGLEINLLSIIPLLTDSKNMVINESSIKYFIIQVMPSTMLLISILL---IQMKYMIW 85
Cdd:MTH00135 8 ILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTnawLTGQWDIQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 86 WEKENIPSMMIMSSMMMKMGAAPFHFWLPEVMGSTSWMNCLILLTWQKIAPMmTLSYCIKMGSFTFTVIL--MGIIVGAM 163
Cdd:MTH00135 88 QMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPF-ALILQIAPTNPTLLITLglTSTLVGGW 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 164 GGLNQTSLRQIMAYSSISHLGWMISLMVVSENVWELYLYIYFLLNIAVIMMFSSMKLFFLNQAYLSGNLSMEIKFLVMLS 243
Cdd:MTH00135 167 GGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLI 246
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 148491463 244 LLSLGGLPPMLGFLPKWIVIQSLIDNNMTTIMFLMVTFTTITLYYYMRISFS 295
Cdd:MTH00135 247 LLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYA 298
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
13-316 |
3.88e-15 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 75.45 E-value: 3.88e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 13 LLMMGTILSISSNTWLGIWMGLEINLLSIIPLLTDSKNMVIN-ESSIKYFIIQVMPSTMLLISILL---------IQMKY 82
Cdd:MTH00196 1 MVALGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSGYSaEAGLKYFVLGALSSGLFLFGCALlcgttgglhLSYIN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 83 MIWWEKEN-------IPSMMIMSSMMMKMGAAPFHFWLPEVMGSTSWMNCLILLTWQKIAPMMTLSYCIKMGSFTFTVIL 155
Cdd:MTH00196 81 LVLNSGQSfssvsvpIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGGL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 156 MGIIVGAMGGLNQTSLRQIMAYSSISHLGWMISLMVV----SENVWELYLYIYFLLNIAVIMMFSSMKLFFLNQAYLSGn 231
Cdd:MTH00196 161 FSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIgsfeSIQASLVYLFIYIIMSICVFSIILALNVYKNLIIEFSG- 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 232 LSMEIKFLVMLSLLSLGGLPP---MLGFLPKWIVIQSLIDNNMTTIMFLMVTFTTITLYYYMRIsfSAIILSHMENSWLV 308
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGippLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI--VKILFFQANSFLLI 317
|
....*...
gi 148491463 309 SIKINKSK 316
Cdd:MTH00196 318 STKILKKE 325
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
24-280 |
3.09e-14 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 71.96 E-value: 3.09e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 24 SNTWLGIWMGLEINLLSIIPLLTD-SKNMVINESSIKYFIIQVMPSTMLLISILLI--------------QMKYMIWWEK 88
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGYwGKSPRSSEAGMKYFLLTLLGSSILLFGISLMynytgtlsfdelskALTGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 89 ENIPSMMIMSSMMMKMGAAPFHFWLPEVMGSTSWMNCLILL-TWQKIAPMMTL-------SYCIKMGSFTFTVILMGIIV 160
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 161 GAMGGLNQTSLRQIMAYSSISHLGWMISLMVV----SENVWELYLYIYFLLNIAVIMMFSSMKL----FFLNQAYLSGNL 232
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAgtiyGIQAAIFHLLTHGLFSAGLFLCAGSVIYrrvhTRNIRDYGGLAK 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 148491463 233 SMEIKFLVMLSLLSLGGLPPM-LGFLPKWIVIQSLIDNNMTTIMFLMVT 280
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPtAGFLGKFLILAAAVAASWIFLVLAGVV 289
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
8-338 |
3.69e-12 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 66.90 E-value: 3.69e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 8 LLFLSLLmmGTILSISSNTWLGIWMGLEINLLSIIPLLTDSKNMVI-NESSIKYFIIQVMPSTMLLISILLI-------- 78
Cdd:TIGR01770 107 LLLFALL--GIFLLVSSNDLLSIYLGLELQSLCFYVLAGLKRKSRFsTEAGLKYFILGAFSSGLLLFGISLIygftgsln 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 79 --QMKYMIWWEKENIPSMMIMSSMMMK-----MGAAPFHFWLPEVMGSTSWMNCLILLTWQKIA---PMMTLS-YCIKMG 147
Cdd:TIGR01770 185 feDLLLFLSNGMLNISLLLLGIVLILVgllfkLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFlYILFGF 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 148 SFTFTVIL-----MGIIVGAMGGLNQTSLRQIMAYSSISHLGW-MISLMVVSENVWE---LYLYIYFLLNIAVIMMFSSM 218
Cdd:TIGR01770 265 SEAWQIFLaiiafLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKavlFYIFIYALMSLGAFGVLSLL 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 219 KLFFLNQAYLSGNLSMEIK------FLVMLSLLSLGGLPPMLGFLPKWIVIQSLIDNNMTTIMFLMVTFTTITLYYYMRI 292
Cdd:TIGR01770 345 RSYKDEWIEYISDFAGLFKtnpilaILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 148491463 293 sfSAIILSHMENSWLVSIKINKSKMILSAMTTISMLGLICTSSLML 338
Cdd:TIGR01770 425 --VKVMYFDKPERRIPSNPQSKAQSLLLSISALFILFLGLFPSLIL 468
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
8-292 |
3.53e-10 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 60.90 E-value: 3.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 8 LLFLSLLmmGTILSISSNTWLGIWMGLEinLLSI-----IPLLTDSKNMviNESSIKYFIIQVMPSTMLL--ISIL---- 76
Cdd:COG1007 107 LLLFATL--GMMLMASANDLLTLFLGLE--LLSLslyvlVAFRRDDRRS--SEAALKYFLLGALSSGFLLygISLLygat 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 77 ----LIQMKYMIWWEKENIPSMMIMSSMMMK-----MGAAPFHFWLPEVMGSTSWMNCLILLTWQKIAPMMTL----SYC 143
Cdd:COG1007 181 gslnLAGIAAALAAGGANSPLLLLGLVLVLAglafkLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllVEA 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 144 IKMGSFTFTVILMGI-----IVGAMGGLNQTSLRQIMAYSSISHLGWM-ISLMVVSENVWE---LYLYIYFLLNI---AV 211
Cdd:COG1007 261 FPGLAADWQLLLAVLavlsmTVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPLGVSaalFYLLAYLFMNLgafAV 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 212 IMMFSSMKLFFLNQAYLSGnLSMEIKFLVMLSLLSLGGLP---PMLGFLPKWIVIQSLIDNNMTTIMFLMVTFTTITLYY 288
Cdd:COG1007 341 ILLLSRKGGEAEEIEDLAG-LARRSPLLALAMTIFLLSLAgipPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYY 419
|
....
gi 148491463 289 YMRI 292
Cdd:COG1007 420 YLRV 423
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
13-292 |
3.03e-08 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 55.02 E-value: 3.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 13 LLMMGTILSISSNTWLGIWMGLEINLLSIIPLLTDSKNMVIN-ESSIKYFIIQVMPSTMLLISILLIqmkYMIWWEK--- 88
Cdd:MTH00199 105 IVALGSLLLVSSINWLSIYLAIELQTLTLFILVALKRDSAYStEAGLKYFVLGAVSSGLFLFGCALL---YGLTGETsiq 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 89 -------ENIPSMMIMSSMMMKMGAAPFHFWLPEVMGSTSWMNCLILLTWQKIApmmTLSYCIKMGSFTFTVIL---MGI 158
Cdd:MTH00199 182 ginsiltGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIG---VFSILVQIGPVTNVVLIcavLSI 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 159 IVGAMGGLNQTSLRQIMAYSSISHLGWMISLMVVSEN----VWELYLYIYFLLNIAVIMMFSSMKLFFLNQAYLSGnLSM 234
Cdd:MTH00199 259 IYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSFesiqASLIYMIIYVIMSICSFSIILSLKLTKGLIVEVSG-LSR 337
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 148491463 235 EIKFLVMLSLLSLGGLPP---MLGFLPKWIVIQSLIDNNMTTIMFLMVTFTTITLYYYMRI 292
Cdd:MTH00199 338 KNPVIALTLALTFLSIAGippLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
16-292 |
6.24e-08 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 54.09 E-value: 6.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 16 MGTILSISSNTWLGIWMGLEINLLSIIPL---------LTDSKNMVINESSIKYFIIQVMPSTMLLI------------- 73
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILagegsqpgsHFPSPGNTPPESGLKYWILGAMSSGFYLFgcalyfgftgneg 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 74 ---SILLIQMKYM-IWWEKENIPSMMIMSSMMMKMGAAPFHFWLPEVMGSTSWMNCLILLTWQKIAPMMTLSYCIKMGSF 149
Cdd:MTH00198 279 mlgTILSATLETTnIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKL 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 150 TFTVILMGIIVGAMGGLNQTSLRQIMAYSSISHLGWMisLMVVSENVWE------LYLYIYFLLNIAVIMMFSSMKLFFL 223
Cdd:MTH00198 359 LLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFI--LIGVSAGTYEslqaswTYAVTYLVSALASFTVICTLEEFGT 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 224 --------NQAYLSGNLSME-------------IKFLVMLSLLSLGGLPPMLGFLPKWIVIQSLID---NNMTTIMFLMV 279
Cdd:MTH00198 437 rtptsrqrDGSFGNYNLVRRlvdltilsrgqpyIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKiafSSSLSIYYLVA 516
|
330
....*....|....*..
gi 148491463 280 TF----TTITLYYYMRI 292
Cdd:MTH00198 517 LFaiicTCISAFYYIRI 533
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
10-292 |
1.05e-07 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 53.29 E-value: 1.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 10 FLSLLMM---GTILSISSNTWLGIWMGLEINLLS---IIPLLTDSKNMviNESSIKYFIIQVMPSTMLLISILLI----- 78
Cdd:PRK05777 105 FYLLVLFallGMMVMVSANDLLTLFLGLELLSLPlyaLAALRRDRRRS--LEAAIKYFVLGALASGFLLYGMSLLygatg 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 79 -----QMKYMIWWEKENIPSMMIMSSMMMK-----MGAAPFHFWLPEVMGSTSWMNCLILLTWQKIA---PMMTLSYCIK 145
Cdd:PRK05777 183 slsfaGIAKALADGSGNSLLLLFGLVFLLVglafkLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAafaVLLRLLVVAF 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 146 MGSFTFTVILMGII------VGAMGGLNQTSLRQIMAYSSISHLGWM-ISLMVVSENVWE---LYLYIYFLLNI---AVI 212
Cdd:PRK05777 263 GGLSEDWQQVLAIIaiasmlVGNLAALSQTNIKRLLAYSSIAHAGYLlVGLAAGTAEGYSavlFYLLAYLFMTLgafGVI 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 213 MM----------FSSMKLFFLNQAYLSgnlsmeikFLVMLSLLSLGGLPPMLGFLPKWIVIQSLIDNNMTTIMFLMVTFT 282
Cdd:PRK05777 343 SLlrrkggeaesISDFAGLSKRSPLLA--------AVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNS 414
|
330
....*....|
gi 148491463 283 TITLYYYMRI 292
Cdd:PRK05777 415 AIGAFYYLRV 424
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
10-187 |
3.04e-03 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 38.97 E-value: 3.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 10 FLSLLMMGTILSISSNTWLGIWMGLEINLLSIIPLLTDSKNMVINESSIKYFIIQVMPSTMLLISILLIQ-------MKY 82
Cdd:COG0651 112 LFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYgatgtlnMAD 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 83 MIWWEKENIPSMMIMSSMMMKMG------AAPFHFWLPEVMGSTS----------WMNC---LILLTWQKIAPMMTLSYc 143
Cdd:COG0651 192 LAARLAELDPGLLLAAFALLLVGfgikaaLFPLHFWLPDAYPAAPspvsallsglLTKVgvyAILRVLTLLFGADPALF- 270
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 148491463 144 ikMGSFTFTVILMGIIVGAMGGLNQTSLRQIMAYSSISHLGWMI 187
Cdd:COG0651 271 --LGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYIL 312
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
105-212 |
3.42e-03 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 39.09 E-value: 3.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148491463 105 GAAPFHFWLPEVMGSTS----------------WMNCLILLTWQKIAPMMTLSYcikmGSFTFTVILMGIIVGAMGGLNQ 168
Cdd:PRK08375 217 AVFPLHTWLPRAYPAAPpvvtallsglvtkvavYALIRIYFTVFGGDFRFALGL----GWLLAVLALLSMLVGSLAALGQ 292
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 148491463 169 TSLRQIMAYSSISHLGWMIsLMVVSENVWELYLYIYFLLNIAVI 212
Cdd:PRK08375 293 DDVKRVLAYSTVSQMGYIL-LGLALLTPLALAAGLLHLLHHALM 335
|
|
| |
