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Conserved domains on  [gi|149787299|gb|ABR29828|]
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glycoprotein, partial [Orthohantavirus caobangense]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Hanta_G1 super family cl03268
Hantavirus glycoprotein G1; The medium (M) genome segment of hantaviruses (family Bunyaviridae) ...
 1-83 5.50e-44

Hantavirus glycoprotein G1; The medium (M) genome segment of hantaviruses (family Bunyaviridae) encodes the two virion glycoproteins. G1 and G2, as a precursor protein in the complementary sense RNA.


The actual alignment was detected with superfamily member pfam01567:

Pssm-ID: 279853  Cd Length: 523  Bit Score: 147.94  E-value: 5.50e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149787299    1 VSKHNTFRTTDQQVNFVCQRVDQDIVVYCNGYKKIIYTKTLVIGQCIYTLTSVFSIFSGVAHSIAIELCVPGFHGWATVA 80
Cdd:pfam01567 388 VSKQNRFRLTEQQVNFVCQRVDMDIVVYCNGQRKVILTKTLVIGQCIYTITSLFSLLPGVAHSIAVELCVPGFHGWATAA 467


                  ...
gi 149787299   81 LII 83
Cdd:pfam01567 468 LLV 470
 
Name Accession Description Interval E-value
Hanta_G1 pfam01567
Hantavirus glycoprotein G1; The medium (M) genome segment of hantaviruses (family Bunyaviridae) ...
 1-83 5.50e-44

Hantavirus glycoprotein G1; The medium (M) genome segment of hantaviruses (family Bunyaviridae) encodes the two virion glycoproteins. G1 and G2, as a precursor protein in the complementary sense RNA.


Pssm-ID: 279853  Cd Length: 523  Bit Score: 147.94  E-value: 5.50e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149787299    1 VSKHNTFRTTDQQVNFVCQRVDQDIVVYCNGYKKIIYTKTLVIGQCIYTLTSVFSIFSGVAHSIAIELCVPGFHGWATVA 80
Cdd:pfam01567 388 VSKQNRFRLTEQQVNFVCQRVDMDIVVYCNGQRKVILTKTLVIGQCIYTITSLFSLLPGVAHSIAVELCVPGFHGWATAA 467


                  ...
gi 149787299   81 LII 83
Cdd:pfam01567 468 LLV 470
 
Name Accession Description Interval E-value
Hanta_G1 pfam01567
Hantavirus glycoprotein G1; The medium (M) genome segment of hantaviruses (family Bunyaviridae) ...
 1-83 5.50e-44

Hantavirus glycoprotein G1; The medium (M) genome segment of hantaviruses (family Bunyaviridae) encodes the two virion glycoproteins. G1 and G2, as a precursor protein in the complementary sense RNA.


Pssm-ID: 279853  Cd Length: 523  Bit Score: 147.94  E-value: 5.50e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149787299    1 VSKHNTFRTTDQQVNFVCQRVDQDIVVYCNGYKKIIYTKTLVIGQCIYTLTSVFSIFSGVAHSIAIELCVPGFHGWATVA 80
Cdd:pfam01567 388 VSKQNRFRLTEQQVNFVCQRVDMDIVVYCNGQRKVILTKTLVIGQCIYTITSLFSLLPGVAHSIAVELCVPGFHGWATAA 467


                  ...
gi 149787299   81 LII 83
Cdd:pfam01567 468 LLV 470
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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