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Conserved domains on  [gi|154269000|gb|ABS72323|]
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eYFP [Cloning vector BSNY]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
GFP super family cl08319
Green fluorescent protein;
19-214 3.45e-15

Green fluorescent protein;


The actual alignment was detected with superfamily member pfam01353:

Pssm-ID: 426217  Cd Length: 211  Bit Score: 72.99  E-value: 3.45e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154269000   19 LDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFGYGLqcFARYPDHMkqhDFFKSAMPEG-YVQER 97
Cdd:pfam01353   7 MEGSVNGHEFDIVGGGNGNPNDGSLETKVKSTKGALPFSPYLLAPHL*YYQ--YLPFPDGT---SPFQAAVENGgYQVHR 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154269000   98 TIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLeyNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGS- 176
Cdd:pfam01353  82 TFKFEDGGVLTIVFTYTYEGGHIKGEFTFQGSGFPPDGPVMTKSL--TGWDPSVEKMIPRNDKTLVGDINWSLKLTDGKr 159
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 154269000  177 --VQLADHYQQNTPIGDGpVLLPDNHYLSYQSALSKDPNE 214
Cdd:pfam01353 160 yrAQVVTNYTFAKPVPAG-LKLPPPHFVFRKIERTGSKTE 198
 
Name Accession Description Interval E-value
GFP pfam01353
Green fluorescent protein;
19-214 3.45e-15

Green fluorescent protein;


Pssm-ID: 426217  Cd Length: 211  Bit Score: 72.99  E-value: 3.45e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154269000   19 LDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFGYGLqcFARYPDHMkqhDFFKSAMPEG-YVQER 97
Cdd:pfam01353   7 MEGSVNGHEFDIVGGGNGNPNDGSLETKVKSTKGALPFSPYLLAPHL*YYQ--YLPFPDGT---SPFQAAVENGgYQVHR 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154269000   98 TIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLeyNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGS- 176
Cdd:pfam01353  82 TFKFEDGGVLTIVFTYTYEGGHIKGEFTFQGSGFPPDGPVMTKSL--TGWDPSVEKMIPRNDKTLVGDINWSLKLTDGKr 159
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 154269000  177 --VQLADHYQQNTPIGDGpVLLPDNHYLSYQSALSKDPNE 214
Cdd:pfam01353 160 yrAQVVTNYTFAKPVPAG-LKLPPPHFVFRKIERTGSKTE 198
 
Name Accession Description Interval E-value
GFP pfam01353
Green fluorescent protein;
19-214 3.45e-15

Green fluorescent protein;


Pssm-ID: 426217  Cd Length: 211  Bit Score: 72.99  E-value: 3.45e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154269000   19 LDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFGYGLqcFARYPDHMkqhDFFKSAMPEG-YVQER 97
Cdd:pfam01353   7 MEGSVNGHEFDIVGGGNGNPNDGSLETKVKSTKGALPFSPYLLAPHL*YYQ--YLPFPDGT---SPFQAAVENGgYQVHR 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154269000   98 TIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLeyNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGS- 176
Cdd:pfam01353  82 TFKFEDGGVLTIVFTYTYEGGHIKGEFTFQGSGFPPDGPVMTKSL--TGWDPSVEKMIPRNDKTLVGDINWSLKLTDGKr 159
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 154269000  177 --VQLADHYQQNTPIGDGpVLLPDNHYLSYQSALSKDPNE 214
Cdd:pfam01353 160 yrAQVVTNYTFAKPVPAG-LKLPPPHFVFRKIERTGSKTE 198
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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