NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|169787757|gb|ACA80280|]
View 

NADH dehydrogenase subunt 2, partial (mitochondrion) [Pseudeos fuscata]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-345 2.66e-149

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 424.23  E-value: 2.66e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757   1 SPLTNLISTTSLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSMINAQHT 80
Cdd:MTH00112   2 NPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNT 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  81 GQWDITQLTYPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTAILLLTSHSTNPTLLTTMSITS 160
Cdd:MTH00112  82 GQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILS 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 161 IALGGWMGLNQTQTRKILAFSSISHLGWMTTIIIYNPKLTLLAFYTYILMTTSIFLTLNTTNTLKLPTLMTSWTKTPMLN 240
Cdd:MTH00112 162 TLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLN 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 241 TTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLAYCSTITLPPNPSNKMKQWSPKKPV 320
Cdd:MTH00112 242 TTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKK 321

                        330       340
                 ....*....|....*....|....*
gi 169787757 321 NILIPTLTSLSISLLPLSPTILATI 345
Cdd:MTH00112 322 NTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-345 2.66e-149

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 424.23  E-value: 2.66e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757   1 SPLTNLISTTSLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSMINAQHT 80
Cdd:MTH00112   2 NPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNT 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  81 GQWDITQLTYPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTAILLLTSHSTNPTLLTTMSITS 160
Cdd:MTH00112  82 GQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILS 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 161 IALGGWMGLNQTQTRKILAFSSISHLGWMTTIIIYNPKLTLLAFYTYILMTTSIFLTLNTTNTLKLPTLMTSWTKTPMLN 240
Cdd:MTH00112 162 TLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLN 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 241 TTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLAYCSTITLPPNPSNKMKQWSPKKPV 320
Cdd:MTH00112 242 TTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKK 321

                        330       340
                 ....*....|....*....|....*
gi 169787757 321 NILIPTLTSLSISLLPLSPTILATI 345
Cdd:MTH00112 322 NTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 13-297 1.67e-22

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 97.88  E-value: 1.67e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  13 LLGTTITITSNHWMMAWTGLELNTLAIIPLIS-KSHHPRAIEASTKYFLTQAAASALVLF-SSMINAQhTGQWDITQL-- 88
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIaa 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  89 ---TYPPSQLLLTTAI-------AIKLGLTPFHFWFPEVLQGSslttalllstlmklpPTAI------------------ 140
Cdd:COG1007  191 alaAGGANSPLLLLGLvlvlaglAFKLSAVPFHMWTPDVYEGA---------------PTPVtaflatapkiaafaallr 255

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 141 LLLTSHSTNP----TLLTTMSITSIALGGWMGLNQTQTRKILAFSSISHLGWMTTIIIYNPKLTL--LAFY--TYILMTT 212
Cdd:COG1007  256 LLVEAFPGLAadwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYllAYLFMNL 335

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 213 SIFLTLNTTNTLKLPTLMTS-----WTKTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLL 287
Cdd:COG1007  336 GAFAVILLLSRKGGEAEEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVI 415

                        330
                 ....*....|
gi 169787757 288 GLFFYLRLAY 297
Cdd:COG1007  416 SAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 22-267 3.91e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 94.30  E-value: 3.91e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757   22 SNHWMMAWTGLELNTLAIIPLI-SKSHHPRAIEASTKYFLTQAAASALVLFSSMINAQHTGQWDITQL-TYPP------- 92
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELsKALTgglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757   93 ---SQLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLM-KLPPTAILLLTS--HSTNPT---LLTTMSITSIAL 163
Cdd:pfam00361  81 lllLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLvKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  164 GGWMGLNQTQTRKILAFSSISHLGWMTTII----IYNPKLTLLAFYTYILMTTSIFL-----TLNTTNTLKLPTLMTSWT 234
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 169787757  235 KTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQ 267
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 13-296 1.77e-19

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 88.85  E-value: 1.77e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757   13 LLGTTITITSNHWMMAWTGLELNTLAIIPLIS-KSHHPRAIEASTKYFLTQAAASALVLFSSMINAQHTGQWDITQLTYP 91
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757   92 PSQ------------LLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTAILL-------LTSHSTNPTL 152
Cdd:TIGR01770 192 LSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  153 LTTMSITSIALGGWMGLNQTQTRKILAFSSISHLGWMTTIIIYNPKLTLLA--FY--TYILMTTSIFLTLNTTNTLKLP- 227
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYifIYALMSLGAFGVLSLLRSYKDEw 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 169787757  228 ----TLMTSWTKT-PMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLA 296
Cdd:TIGR01770 352 ieyiSDFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-345 2.66e-149

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 424.23  E-value: 2.66e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757   1 SPLTNLISTTSLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSMINAQHT 80
Cdd:MTH00112   2 NPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNT 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  81 GQWDITQLTYPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTAILLLTSHSTNPTLLTTMSITS 160
Cdd:MTH00112  82 GQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILS 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 161 IALGGWMGLNQTQTRKILAFSSISHLGWMTTIIIYNPKLTLLAFYTYILMTTSIFLTLNTTNTLKLPTLMTSWTKTPMLN 240
Cdd:MTH00112 162 TLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLN 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 241 TTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLAYCSTITLPPNPSNKMKQWSPKKPV 320
Cdd:MTH00112 242 TTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKK 321

                        330       340
                 ....*....|....*....|....*
gi 169787757 321 NILIPTLTSLSISLLPLSPTILATI 345
Cdd:MTH00112 322 NTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 3-314 1.80e-121

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 353.34  E-value: 1.80e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757   3 LTNLISttSLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSMINAQHTGQ 82
Cdd:MTH00135   6 LTILLF--SLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQ 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  83 WDITQLTYPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTAiLLLTSHSTNPTLLTTMSITSIA 162
Cdd:MTH00135  84 WDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFA-LILQIAPTNPTLLITLGLTSTL 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 163 LGGWMGLNQTQTRKILAFSSISHLGWMTTIIIYNPKLTLLAFYTYILMTTSIFLTLNTTNTLKLPTLMTSWTKTPMLNTT 242
Cdd:MTH00135 163 VGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTAL 242

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 169787757 243 LFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLAYCSTITLPPNPSNKMKQW 314
Cdd:MTH00135 243 TPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPW 314
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-325 1.55e-119

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 348.45  E-value: 1.55e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757   1 SPLTNLISTTSLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSMINAQHT 80
Cdd:MTH00070   2 SPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFT 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  81 GQWDITQLTYPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTAILLLTSHSTNPTLLTTMSITS 160
Cdd:MTH00070  82 GEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLS 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 161 IALGGWMGLNQTQTRKILAFSSISHLGWMTTIIIYNPKLTLLAFYTYILMTTSIFLTLNTTNTLKLPTLMTSWTKTPMLN 240
Cdd:MTH00070 162 TLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLT 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 241 TTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLAYCSTITLPPNPSNKMKQWSPKKPV 320
Cdd:MTH00070 242 SMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKT 321


                 ....*
gi 169787757 321 NILIP 325
Cdd:MTH00070 322 NNLLS 326
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-325 5.71e-110

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 324.11  E-value: 5.71e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757   1 SPLTNLISTTSLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSMINAQHT 80
Cdd:MTH00105   2 NPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYS 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  81 GQWDITQLTYPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTAILLLTSHSTNPTLLTTMSITS 160
Cdd:MTH00105  82 GQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILS 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 161 IALGGWMGLNQTQTRKILAFSSISHLGWMTTIIIYNPKLTLLAFYTYILMTTSIFLTLNTTNTLKLPTLMTSWTKTPMLN 240
Cdd:MTH00105 162 ILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMT 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 241 TTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLAYCSTITLPPNPSN-KMK-QWSPKK 318
Cdd:MTH00105 242 SLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNmKMKwQFENTK 321


                 ....*..
gi 169787757 319 PVNILIP 325
Cdd:MTH00105 322 PMTLLPT 328
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-325 2.16e-90

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 274.15  E-value: 2.16e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757   1 SPLTNLISTTSLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSMINAQHT 80
Cdd:MTH00200   2 SPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTS 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  81 GQWDITQLTYPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTAILLLTSHSTNPTLLTTMSITS 160
Cdd:MTH00200  82 GQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLS 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 161 IALGGWMGLNQTQTRKILAFSSISHLGWMTTIIIYNPKLTLLAFYTYILMTTSIFLTLNTTNTLKLPTLMTSWTKTPMLN 240
Cdd:MTH00200 162 VLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILS 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 241 TTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLAYCSTITLPPNPSNKMKQWSPKKPV 320
Cdd:MTH00200 242 MLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNS 321


                 ....*
gi 169787757 321 NILIP 325
Cdd:MTH00200 322 NLLVG 326
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 10-325 2.74e-79

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 246.00  E-value: 2.74e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  10 TSLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSMINAQHTGQWDITQLT 89
Cdd:MTH00041  11 TSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPL 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  90 YPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTAILLLTSHSTNPTLLTTMSITSIALGGWMGL 169
Cdd:MTH00041  91 NTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGL 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 170 NQTQTRKILAFSSISHLGWMTTIIIYNPKLTLLAFYTYILMTTSIFLTLNTTNTLKLPTLMTSWTKTPMLNTTLFLTLLS 249
Cdd:MTH00041 171 NQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILS 250

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 169787757 250 LAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLAYCSTITLPPNPSNKMKQWSPKKPVNILIP 325
Cdd:MTH00041 251 LGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGV 326
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 3-324 2.65e-56

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 186.18  E-value: 2.65e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757   3 LTNLISTTSLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSMINAQhtgq 82
Cdd:MTH00160   5 SSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML---- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  83 wdITQLTYPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPtaiLLLTSHSTNPTLLTTMSITSIA 162
Cdd:MTH00160  81 --NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAP---LILLSYLINNNFIIIIIILSAI 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 163 LGGWMGLNQTQTRKILAFSSISHLGWMTTIIIYNPKLTLLAFYTYILMTTSIFLTLNTTNTLKLPTLMTSWTKTPMLNTT 242
Cdd:MTH00160 156 IGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFL 235

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 243 LFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLAYCSTITLPPNPSNKMKQWSPKKPVNI 322
Cdd:MTH00160 236 LFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLIL 315


                 ..
gi 169787757 323 LI 324
Cdd:MTH00160 316 NF 317
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 4-309 4.96e-46

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 159.56  E-value: 4.96e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757   4 TNLISTTSLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSminaqhTGQW 83
Cdd:MTH00011   7 TMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMW 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  84 DITQLTYPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTAILLLTSHSTNPTLLTTMSITSIAL 163
Cdd:MTH00011  81 SFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 164 GGWMGLNQTQTRKILAFSSISHLGWMTTIIIYNPKLTLLAFYTYILMTTSIFLTLNTTNTLKLPTLMTSWTKTPMLNTTL 243
Cdd:MTH00011 161 GGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSL 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 169787757 244 FLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLAYcSTITLPPNPSN 309
Cdd:MTH00011 241 FIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS 305
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-324 2.08e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 157.74  E-value: 2.08e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757   5 NLISTTSLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSMINAQHTGQWD 84
Cdd:MTH00144   6 NLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWF 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  85 ITqltyppsqLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPtaILLLTSHSTNPTLLTT---MSITSI 161
Cdd:MTH00144  86 SM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAP--LFLLSNFLDLYWLAYLlcvISVLSA 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 162 ALGGWMGLNQTQTRKILAFSSISHLGWMTTIIIYNPKLTLLAFYTYILMTTSIFLTLNTTNTlKLPTLMTSWTKTPMLNT 241
Cdd:MTH00144 156 LVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDS-GSMKDLGSLKPSYKTGL 234

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 242 TLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLAYCSTITlppnpSNKMKQWSPKKPVN 321
Cdd:MTH00144 235 SIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLS-----SSKSKKSNSSKVLN 309


                 ...
gi 169787757 322 ILI 324
Cdd:MTH00144 310 SSI 312
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 11-312 1.30e-40

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 144.81  E-value: 1.30e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  11 SLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSMINAQHTgqwditqLTY 90
Cdd:MTH00197   6 IIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL-------YLS 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  91 PPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPtaILLLTSHSTNPTLLTTMSITSIALGGWMGLN 170
Cdd:MTH00197  79 LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAP--LLILAFNSSSFMGLLICSVLSSLIGGIGGMN 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 171 QTQTRKILAFSSISHLGWMTTIIIYNPKLTLLAFYTYILMTTSIFLTLNTTNTLKLPTLMTSWTKTPMLNTTLFLTLLSL 250
Cdd:MTH00197 157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSL 236

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 169787757 251 AGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLAYCSTITLPPNPSNKMK 312
Cdd:MTH00197 237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMK 298
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 12-295 2.94e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 98.95  E-value: 2.94e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  12 LLLGTTITITSNHWMMAWTGLELNTLAIIPLI-SKSHHPRAIEASTKYFLTQAAASALVLFS-------------SMINA 77
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  78 QHTGQWDITQLTYPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTAILLltSHSTNPTLLTTMS 157
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 158 ITSIALGGWMGLNQTQTRKILAFSSISHLGWMTTII----IYNPKLTLLAFYTYILMTTSIFLTLNTTNTLK--LPTLMT 231
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 169787757 232 SWTKTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRL 295
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 13-297 1.67e-22

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 97.88  E-value: 1.67e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  13 LLGTTITITSNHWMMAWTGLELNTLAIIPLIS-KSHHPRAIEASTKYFLTQAAASALVLF-SSMINAQhTGQWDITQL-- 88
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIaa 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  89 ---TYPPSQLLLTTAI-------AIKLGLTPFHFWFPEVLQGSslttalllstlmklpPTAI------------------ 140
Cdd:COG1007  191 alaAGGANSPLLLLGLvlvlaglAFKLSAVPFHMWTPDVYEGA---------------PTPVtaflatapkiaafaallr 255

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 141 LLLTSHSTNP----TLLTTMSITSIALGGWMGLNQTQTRKILAFSSISHLGWMTTIIIYNPKLTL--LAFY--TYILMTT 212
Cdd:COG1007  256 LLVEAFPGLAadwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYllAYLFMNL 335

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 213 SIFLTLNTTNTLKLPTLMTS-----WTKTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLL 287
Cdd:COG1007  336 GAFAVILLLSRKGGEAEEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVI 415

                        330
                 ....*....|
gi 169787757 288 GLFFYLRLAY 297
Cdd:COG1007  416 SAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 22-267 3.91e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 94.30  E-value: 3.91e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757   22 SNHWMMAWTGLELNTLAIIPLI-SKSHHPRAIEASTKYFLTQAAASALVLFSSMINAQHTGQWDITQL-TYPP------- 92
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELsKALTgglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757   93 ---SQLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLM-KLPPTAILLLTS--HSTNPT---LLTTMSITSIAL 163
Cdd:pfam00361  81 lllLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLvKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  164 GGWMGLNQTQTRKILAFSSISHLGWMTTII----IYNPKLTLLAFYTYILMTTSIFL-----TLNTTNTLKLPTLMTSWT 234
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 169787757  235 KTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQ 267
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
13-295 9.82e-22

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 95.66  E-value: 9.82e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  13 LLGTTITITSNHWMMAWTGLELNTLAIIPLIS-KSHHPRAIEASTKYFLTQAAASALVLF-SSMINAQhTGQWDITQL-- 88
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYgMSLLYGA-TGSLSFAGIak 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  89 ----TYPPSQLLLT------TAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTAILL-------LTSHSTNPT 151
Cdd:PRK05777 192 aladGSGNSLLLLFglvfllVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLrllvvafGGLSEDWQQ 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 152 LLTTMSITSIALGGWMGLNQTQTRKILAFSSISHLGWMTTIIIYNPKLTL--LAFY--TYILMTTSIF--LTLNTTNTLK 225
Cdd:PRK05777 272 VLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYllAYLFMTLGAFgvISLLRRKGGE 351

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 169787757 226 LPTLmTSWT----KTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRL 295
Cdd:PRK05777 352 AESI-SDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 13-296 1.77e-19

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 88.85  E-value: 1.77e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757   13 LLGTTITITSNHWMMAWTGLELNTLAIIPLIS-KSHHPRAIEASTKYFLTQAAASALVLFSSMINAQHTGQWDITQLTYP 91
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757   92 PSQ------------LLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTAILL-------LTSHSTNPTL 152
Cdd:TIGR01770 192 LSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  153 LTTMSITSIALGGWMGLNQTQTRKILAFSSISHLGWMTTIIIYNPKLTLLA--FY--TYILMTTSIFLTLNTTNTLKLP- 227
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYifIYALMSLGAFGVLSLLRSYKDEw 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 169787757  228 ----TLMTSWTKT-PMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLA 296
Cdd:TIGR01770 352 ieyiSDFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 1-295 4.68e-19

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 87.76  E-value: 4.68e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757   1 SPLTNLIsttsLLLGTTITITSNHWMMAWTGLELNTLAIIPLIS-KSHHPRAIEASTKYFLTQAAASALVLFSSMINAQH 79
Cdd:MTH00199  99 SPILILI----VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGL 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  80 TGQWDITQLTYPPS----QLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTAILLLTSHSTNPTLLTt 155
Cdd:MTH00199 175 TGETSIQGINSILTgdvgKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC- 253

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 156 mSITSIALGGWMGLNQTQTRKILAFSSISHLGWMTTIIIYNP----KLTLLAFYTYILMTT---SIFLTLNTTNTLKLPT 228
Cdd:MTH00199 254 -AVLSIIYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSIcsfSIILSLKLTKGLIVEV 332

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 169787757 229 LMTSwTKTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRL 295
Cdd:MTH00199 333 SGLS-RKNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 12-295 1.56e-15

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 77.11  E-value: 1.56e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  12 LLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSMINAQHTGQWDITQL--- 88
Cdd:COG0651  116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLaar 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  89 --TYPPSQL-----LLTTAIAIKLGLTPFHFWFPEVlqgsslttalllstlMKLPPTAI--------------------- 140
Cdd:COG0651  196 laELDPGLLlaafaLLLVGFGIKAALFPLHFWLPDA---------------YPAAPSPVsallsglltkvgvyailrvlt 260

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 141 LLLTSHSTNP--TLLTTMSITSIALGGWMGLNQTQTRKILAFSSISHLGWMTT-IIIYNPKLTLLAFY---TYILMTTSI 214
Cdd:COG0651  261 LLFGADPALFlgTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLgLGLGTPLGLAGALFhllNHALAKALL 340

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 215 FLT----LNTTNTLKLPTLMTSWTKTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLF 290
Cdd:COG0651  341 FLAagaiERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLA 420


                 ....*
gi 169787757 291 FYLRL 295
Cdd:COG0651  421 YFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 14-295 1.19e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 74.90  E-value: 1.19e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  14 LGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAI---------EASTKYFLTQAAASALVLFSSMINAQHTGQ-- 82
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  83 --WDITQLTYPPSQ----------LLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLppTAILLLTSHSTNP 150
Cdd:MTH00198 279 mlGTILSATLETTNielrqgslgyLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 151 TLLTTMSITSIALGGWMGLNQTQTRKILAFSSISHLGWMTTIIIYNPKLTLLAFYTYILM-TTSIFLTLNTTNTL----- 224
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVTyLVSALASFTVICTLeefgt 436

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 225 -------------------KLPTLMTSWTKTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLS 285
Cdd:MTH00198 437 rtptsrqrdgsfgnynlvrRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIYYLVA 516

                        330
                 ....*....|....*..
gi 169787757 286 LLGL-------FFYLRL 295
Cdd:MTH00198 517 LFAIictcisaFYYIRI 533
ndhB CHL00049
NADH dehydrogenase subunit 2
 50-262 1.00e-08

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 56.55  E-value: 1.00e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  50 RAIEASTKYFLTQAAASALVL--FSSM--INAQHTGQWDI------TQLTYPPSQLL----LTTAIAIKLGLTPFHFWFP 115
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVygFSWLygLSGGEIELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTP 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 116 EVLQGSSLTTALLLSTLMKLPPTAIL-----LLTSHSTNP--TLLTTMSITSIALGGWMGLNQTQTRKILAFSSISHLGW 188
Cdd:CHL00049 239 DVYEGSPTPVVAFLSVTSKVAASALAtrifdIPFYFSSNEwhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 189 -MTTIIIYNPKLTLLAFYTYilMTTSIFLTLNTTNTLKLPTLMT----------SWTKTPMLNTTLFLTLLSLAGLPPLT 257
Cdd:CHL00049 319 vIIGIIVGDSNDGYASMITY--MLFYIFMNLGTFACIVLFGLRTgtdnirdyagLYTKDPFLALSLALCLLSLGGIPPLA 396


                 ....*
gi 169787757 258 GFLPK 262
Cdd:CHL00049 397 GFFGK 401
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 32-297 2.19e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 52.19  E-value: 2.19e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  32 LELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSMINAQHTGQWDITQLT--YPPSQLLLT------TAIAI 103
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAgaLAENPTVVTafgfvlLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 104 KLGLTPFHFWFPEvlqgsslttalllstLMKLPPTAILLLTS-------------------------HSTNPTLLTTMSI 158
Cdd:PRK08375 215 KAAVFPLHTWLPR---------------AYPAAPPVVTALLSglvtkvavyaliriyftvfggdfrfALGLGWLLAVLAL 279

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 159 TSIALGGWMGLNQTQTRKILAFSSISHLGWMTTIIIYNPKLTLLA--FY---------TYILMTTSIFLTLNTTNTLKLP 227
Cdd:PRK08375 280 LSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHllhhalmkgALFLAAGAIEVTYGTRRLSELS 359

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 228 TLMTswtKTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLAY 297
Cdd:PRK08375 360 GLGR---RMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 29-297 2.64e-07

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 52.31  E-value: 2.64e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  29 WTGLELNTLAIIPLISKshhpRAIEASTKYFLTQAAASALVLFSSMINAQHTGQWDITQ----LTYPPSQ-------LLL 97
Cdd:PRK08668 127 WEIMTFSSFMMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADisqgLINDTSTgfalivfLFL 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  98 TTAIAIKLGLTPFHFWFPE-----------VLQGSSLTT-ALLLSTLMKLPPTAILLLT-----SHSTNPTLLTTMSITS 160
Cdd:PRK08668 203 LAFGVAKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLgAYGFLLVLYVLPGTKLFSEfgtyrGVPLFNYILAWLGNIS 282

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 161 IALGGWMGLNQTQTRKILAFSSISHLGWmttIIIYNPKLTLLAF-------YTYILMTTSIFLTLNT----TNTLKLPTL 229
Cdd:PRK08668 283 IIVGTLMAILQEDIKKLIAYSSVANGGY---ILVGLGLGTSLGFagglfhvFNHALFKGLFFLIFAAviyrTGTTKISEM 359

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 169787757 230 MTSWTKTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLAY 297
Cdd:PRK08668 360 GGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLA 427
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 37-190 4.76e-07

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 51.24  E-value: 4.76e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  37 LAIIP---LISKSHHPRAIEASTKYFLTQAAASALVLFSSMINAQHTGQW-----DITQLTYPPSQ-----LLLTTAIAI 103
Cdd:COG1008  142 LMLIPmyfLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTAqlllfLAFFIAFAV 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 104 KLGLTPFHFWFPEVLQGSSlttalllstlmklPPTAILL---------------------LTSHSTNPTLLTtMSITSIA 162
Cdd:COG1008  222 KVPMFPFHTWLPDAHVEAP-------------TAGSVLLagvllkmggygllrfalplfpEASAYFAPLLAA-LGVIGII 287

                        170       180
                 ....*....|....*....|....*...
gi 169787757 163 LGGWMGLNQTQTRKILAFSSISHLGWMT 190
Cdd:COG1008  288 YGALVALAQTDLKRLIAYSSVSHMGFVL 315
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 78-262 1.75e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 49.92  E-value: 1.75e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  78 QHTGQWDITQL-TYPPSQLLLTTAIAI-------KLGLTPFHFWFPEVLQGSSLTTALLLSTLM---------KLPPTAi 140
Cdd:PRK12644 182 QAAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPGF- 260

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 141 llltSHST--NPTLLTTMSITSIaLGGWMGLNQTQTRKILAFSSISHLGWMTTIIIYNPKLTLLAFYTYI----LMTTSI 214
Cdd:PRK12644 261 ----ADVPvwRPTVLVLGLATML-LGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLAMLlahaLFKAAL 335

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 169787757 215 FLTL----NTTNTLKLPTLMTSWTKTPMLNTTLFLTLLSLAGLPPLTGFLPK 262
Cdd:PRK12644 336 FLVVgiidHSTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 49-287 3.29e-06

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 48.40  E-value: 3.29e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757   49 PRAIEASTKYFLTQAAASALVLfSSMINAQHTGQW-----DITQLTYPPS-QLLLTTAI----AIKLGLTPFHFWFPEV- 117
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLML-LAILGLYFLGGGtfdllELLNLPLPFGvQTWLFLAFfiafAVKVPLFPLHTWLPDAh 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  118 LQGSSLTTALLLSTLMKLPPTAILLLT------SHSTNPTLLTTMSITSIALGGWMGLNQTQTRKILAFSSISHLGWMTT 191
Cdd:TIGR01972 231 VEAPTAGSVILAGVLLKMGTYGFLRFNlplfpdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  192 -IIIYNPKLTLLAFYTYI---LMTTSIFLTLNT----TNTLKLPTLMTSWTKTPMLNTTLFLTLLSLAGLPPLTGFLPKW 263
Cdd:TIGR01972 311 gIFSFNELGISGAVFQMIshgLITAALFLLVGVlyerAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEF 390

                         250       260
                  ....*....|....*....|....
gi 169787757  264 LIIQELTKqeMTPTATIISMLSLL 287
Cdd:TIGR01972 391 LILLGSFK--VNPVVAFLAALGIV 412
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 32-317 4.19e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 48.17  E-value: 4.19e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  32 LELNTLAIIPLIS-KSHHPRAIEASTKYFLTQAAASALVLFSSminAQHTGQWDITQLTYPPSQL-------------LL 97
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAYLAVKMsenptvvakialaLF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  98 TTAIAIKLGLTPFHFWFPE--------VLQGSSLTTALLLSTLMKLPPTAILLLTSHSTNPTLLTTMSITSIALGGWMGL 169
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDaypaapssISAMLLVIKQAGLYALARVLFSIYGPAINLATVGWVIIILGCLTMFVGVAMAV 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 170 NQTQTRKILAFSSISHLGWM---TTIIIYNPKLTLLAFYTYILMTTSIFLTLN-----------------TTNTLKLPTL 229
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMllgLGVGLAALGDPAMASYGEIALAGGIYHIVNhalykallfltagaviyETGTRNLNEL 386

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 230 MTSWTKTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQelTKQEMTPTATIISML-SLLGLFFYLRLAYcSTITLPPNPS 308
Cdd:PRK08376 387 GGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYE--SSALFNPILGVIAMIgSVLTLASFVKVFH-TAFFGPPSEK 463


                 ....*....
gi 169787757 309 NKMKQWSPK 317
Cdd:PRK08376 464 VMNVKEPPK 472
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
49-262 5.85e-06

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 47.74  E-value: 5.85e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  49 PRAIEASTKYFLTQAAASALVLF-SSMINAQHTGQWDIT----QLTYPPSQLLLTT------AIAIKLGLTPFHFWFPEV 117
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSaialALITSPSLGLALAlvfviaGIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 118 LQGSSLTTALLLSTLMKLP--PTAILLLTSHSTNPT-----LLTTMSITSIALGGWMGLNQTQTRKILAFSSISHLGWMT 190
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAgfALAIRLLVTAFPSFDeqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 191 TIIIYNPK--LTLLAFY--TYILMT----TSIFLTLNTTNTLKLPTLMTSWTKTPMLNTTLFLTLLSLAGLPPLTGFLPK 262
Cdd:PRK02504 317 IGLVAGTEagYASMVFYllAYLFMNlgafACVILFSLRTGTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396
PRK12650 PRK12650
DUF4040 family protein;
28-262 7.64e-06

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 47.73  E-value: 7.64e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  28 AWtglELNTLAIIPLISKSHhPRAIEASTKYFLTQAAASALVLFSSMINAQHTGQWDITQLTYPPS---QLLLTTAIAIK 104
Cdd:PRK12650 138 AW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILHSDVwaeKPGLTTVVAVL 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 105 LGLT--------PFHFWFPEVLQGSSLTTALLLSTLMKLPPTAILLLTS--HSTNPT---LLTTMSITSIALGGWMGLNQ 171
Cdd:PRK12650 214 IAVAaftksaqfPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSpvFHDVAVwnwLLIIVGMITALMGAVFAVQK 293

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 172 TQTRKILAFSSISHLGWM-TTIIIYNP-KLTLLAFYT--YILMTTSIFLTL----NTTNTLKLPTLMTSWTKTPMLNTTL 243
Cdd:PRK12650 294 TDLKKLTAYSTVSQLGWIvATIGVGTPfALTAAVVHTlaHALFKSSLFMLIgvvdHQAGTRDIRRLGSLWRRMPFTFVSV 373

                        250
                 ....*....|....*....
gi 169787757 244 FLTLLSLAGLPPLTGFLPK 262
Cdd:PRK12650 374 TIAALSMAAVPPLFGFVSK 392
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 12-193 3.61e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 45.52  E-value: 3.61e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  12 LLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAA------SALVLFSSMINAQHTGQWDI 85
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  86 TQLT-----YPPSQLLLT-----TAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMK-------LPPTAILLLTS-HS 147
Cdd:PRK08676 191 TELAahaslLSPSVLGASflfifIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLnigiygiLRLSALLRQSGaAE 270

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 169787757 148 TNPTLLTTMSITSIALGGWMGLNQTQTRKILAFSSISHLGWMTTII 193
Cdd:PRK08676 271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGI 316
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 19-191 4.88e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 44.92  E-value: 4.88e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  19 TITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSS----------MINAQHTGQWdiTQL 88
Cdd:PRK06458 124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvMGDGEMAILW--TEL 201

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  89 TYPPSQL---LLTTAIAI-------KLGLTPFHFWFPE-----------VLQGSSLTTALLLSTLMKlpptaILLLTSHS 147
Cdd:PRK06458 202 LKHASLLdptLMKLAFVFlligfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALYAVLRYY-----ILIDAAIG 276

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 169787757 148 TNP--TLLTTMSITSIALGGWMGLNQTQTRKILAFSSISHLGWMTT 191
Cdd:PRK06458 277 SDFpgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 37-190 6.59e-04

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 41.34  E-value: 6.59e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  37 LAIIP---LISKSHHPRAIEASTKYFLTQAAASALVLFSSM----INAQHTGQWDITQLTYPP----SQLLLTTAI---- 101
Cdd:PRK05846 142 AMLIPmyfLIGVWGGKNRIYAATKFFLYTLLGSLLMLVAIIylvvVYYNATGTFDIADLLNLPlppgVQYWLFLAFfiaf 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 102 AIKLGLTPFHFWFPE-----------VLQGSSLTTALLLSTLMKLPptaILLLTSHSTNPtLLTTMSITSIALGGWMGLN 170
Cdd:PRK05846 222 AVKMPMFPLHTWLPDahvqaptagsvLLAGILLKMGAYGLLRFSLP---LFPDASHEFAP-IIITLGVIAIIYGALVALA 297

                        170       180
                 ....*....|....*....|
gi 169787757 171 QTQTRKILAFSSISHLGWMT 190
Cdd:PRK05846 298 QTDIKKLIAYSSISHMGFVT 317
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 151-266 7.44e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 41.26  E-value: 7.44e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 151 TLLTTMSITSIALGGWMGLNQTQTRKILAFSSISHLGWMTTIIIYNPKLTLLAFYTYI----LMTTSIFLTLNTT----N 222
Cdd:PRK12662 280 NVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsIVKSALFMVSGSIsyhfG 359

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 169787757 223 TLKLPTLMTSWTKTPMLNTTLFLTLLSLAGLPPLTGFLPKWLII 266
Cdd:PRK12662 360 TTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 47-262 9.13e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 40.97  E-value: 9.13e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  47 HHPRAIEASTKYFLTQAAASALVLFSSMINAQHTGQWDITQLTYPPS--------QLLLTTAIAIKLGLT------PFHF 112
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghPLFLITLILIFIGAAaksaqgPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 113 WFPEVLQGSSLTTALLLSTLMkLPPTAILLLTSH---STNPTLLTTMSITSIA---LGGWMGLNQTQTRKILAFSSISHL 186
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATM-VKAGVYLVARIHpifSGTEAWFILVSGTGMItmvLAGFLAFRQTDIKAILAYSTISQL 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 187 GWMTTIIIYN----PKLTLLAfYTYILMTTSIF---------LTLNTTNTLKLPTLMTSWTKTPMLNTTLFLTLLSLAGL 253
Cdd:PRK12649 315 AYLMTMYGYTtyhePGLGVAA-ATFHLLNHATFkaclflvagIVAHEAATRDIRKLGGLRKEMPITFIVASIAALAMAGI 393


                 ....*....
gi 169787757 254 PPLTGFLPK 262
Cdd:PRK12649 394 PPLNGFLSK 402
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 20-297 1.16e-03

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 40.52  E-value: 1.16e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  20 ITSNHWMMAWTGLELNTLAIIPLISKSHH-PRAIEASTKYFLTQAAASALVLFSSMINAQHTGQWDITQL-----TYPPS 93
Cdd:COG1009  128 VLSDNLLLLFVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaapTILSS 207

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  94 QLLLTTAIAI------KLGLTPFHFWFPEVLQGsslttalllstlmklpPTAI----------------------LLLTS 145
Cdd:COG1009  208 PLLTLILLLLllgafgKSAQFPLHFWLPDAMEG----------------PTPVsallhaatmvkagvyllarlspLFALS 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 146 HSTNPTLLTTMSITSIaLGGWMGLNQTQTRKILAFSSISHLGWMTTII---IYNPKLTLL---AFY--TYILMTTSIFLT 217
Cdd:COG1009  272 PVWLTVVAIIGAITAL-FAALIALAQTDIKRVLAYSTVSQLGYMFLALgvgAYVAALFHLlthAFFkaLLFLGAGSVIHA 350

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 218 LNTTNTLKLPTLmtsWTKTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQE-LTKQEMTPTATIISML-SLLGLFFYLRL 295
Cdd:COG1009  351 TGTRDIRKMGGL---RKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAaLEAGGLGPLLLAVALLgAFLTAFYSFRL 427


                 ..
gi 169787757 296 AY 297
Cdd:COG1009  428 FF 429
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 54-187 2.21e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 39.63  E-value: 2.21e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  54 ASTKYFLTQAAASALVLFSSMINAQHTGQ--WDITQLT---YPPS-QLLLTT----AIAIKLGLTPFHFWFPE------- 116
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGaksYPLAlELLLYAgfliAFGVKLPIFPLHTWLPDahgeasa 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 169787757 117 ----VLQGSSLTTALLLSTLMKLPptaiLLLTSHSTNPTLLTTMSITSIALGGWMGLNQTQTRKILAFSSISHLG 187
Cdd:PRK12561 218 pvsmILAGVLLKMGGYALIRFNVQ----MLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMG 288
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
33-307 2.30e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 39.63  E-value: 2.30e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  33 ELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSMINAQHTGQWDITQLTY-----PPSQLLLTTAIAIKLG- 106
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDIHNallvnPTSPVIYGGLLLLIFGl 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 107 -----LTPFHFWFPEVLQGSSLTTALLLSTLMKLPPTAILL--------LTSHSTNPTLLTTMSITSIALGGWMGLNQTQ 173
Cdd:PRK06277 210 lygsgLPPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLvifklfggLSYFPSAQGVLIALSVLAMVFGVVMALLQTD 289

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 174 TRKILAFSSISHLGWMTTIIIYNPKLTLLA--FYT--YILMTTSIFLTL-------NTTNTLKLPTLMTSwtkTPMLNTT 242
Cdd:PRK06277 290 YKRLLAYHAISQGGYVAAGLALGTPLGIVAgiFHAinHVIYKSALFLGAgivsyrtKTSNLRKLGGLLPV---MPVVAFM 366

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 169787757 243 LFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLAYcsTITLPPNP 307
Cdd:PRK06277 367 VLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFY--LIYLKPKP 429
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 32-270 3.47e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 39.16  E-value: 3.47e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  32 LELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSMINAQHTGQWDITQL-TYPPSQL-LLTTAIAIKLGLTP 109
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLaTADPEAFaLIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 110 FHFWFPEVlqgsslttalllstlMKLPPTAILLLTS-----------------HSTNPTLLTTMSITSIALGGWMGLNQT 172
Cdd:PRK07234 203 SGLWLPLT---------------HSEAEPPVSALLSgvvvkagvfplvrcaldVPGLDLIVRIFGVGTALLGVLFALLEK 267

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 173 QTRKILAFSSISHLGWmttiIIYNPKLTLLAFYTYILMTTSIFL---TLNTTNTLKLPTLMT-SWTKTPMlnttlFLTLL 248
Cdd:PRK07234 268 DLKRMLAFSTISQLGF----ILAAPLVGGLYALAHGLVKSTLFLcagALPSRNFTELISQMLgIGKWIPL-----TMASF 338

                        250       260
                 ....*....|....*....|..
gi 169787757 249 SLAGLPPLTGFLPKWLIIQELT 270
Cdd:PRK07234 339 SIAGFPLLAGFVSKVLTLKNLL 360
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 151-288 4.86e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 38.75  E-value: 4.86e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757 151 TLLTTMSITSIALGGWMGLNQTQTRKILAFSSISHLGWMTTIIIYNPKLTLLAFYTYI----LMTTSIFLTLNT----TN 222
Cdd:PRK12647 260 TILPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLvahsLYKGALFMVAGIidheTG 339

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 169787757 223 TLKLPTLMTSWTKTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTkqEMTPTATIISMLSLLG 288
Cdd:PRK12647 340 TRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALL--EAPLWSLILTVAAVLG 403
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
12-119 9.14e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 37.76  E-value: 9.14e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787757  12 LLLGTTITITSNHW---MMAW--TGLELNTLaiipLISKSHHPRAIEASTKYFLTQAAASALVLFSSMINAQHTGQWDIT 86
Cdd:PRK08168 109 VLAAVHLLVLSDHLlvlIAAWaaISLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLS 184

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 169787757  87 QL--------TYPPSQ---LLLTTAIAIKLGLTPFHFWFPEVLQ 119
Cdd:PRK08168 185 ALwahlaaqgASPSLQaaaLLLVLAVILKTAQLPVHGWLIQVME 228
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH