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Conserved domains on  [gi|169787769|gb|ACA80286|]
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NADH dehydrogenase subunt 2 (mitochondrion) [Pyrrhura picta]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 4.06e-149

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 423.85  E-value: 4.06e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769   1 MTPLAKLIFTSSILLGTTITITSNHWMTAWIGLEINTLSIIPMISKSHHPRAIEATTKYFLVQAAASTLLLFSGTINAWY 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  81 TGQWDITQLSYPPACLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLSPTLLMLMSTT 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 161 SIALGGWMGLNQTQTRKIMAFSSISHIGWMTIITAHNPELTLLAFYIYILMTASIFLTMNTTNTLSLPTLMASWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAMTISLLSLLSLFFYLRLAYCTTITLPPNPSNKTKQWYAKSS 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 169787769 321 TNTLIPTLTSLSVSLLPLTPMMLTTT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 4.06e-149

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 423.85  E-value: 4.06e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769   1 MTPLAKLIFTSSILLGTTITITSNHWMTAWIGLEINTLSIIPMISKSHHPRAIEATTKYFLVQAAASTLLLFSGTINAWY 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  81 TGQWDITQLSYPPACLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLSPTLLMLMSTT 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 161 SIALGGWMGLNQTQTRKIMAFSSISHIGWMTIITAHNPELTLLAFYIYILMTASIFLTMNTTNTLSLPTLMASWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAMTISLLSLLSLFFYLRLAYCTTITLPPNPSNKTKQWYAKSS 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 169787769 321 TNTLIPTLTSLSVSLLPLTPMMLTTT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 6.66e-27

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 110.59  E-value: 6.66e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  14 LLGTTITITSNHWMTAWIGLEINTLSIIPMIS-KSHHPRAIEATTKYFLVQAAASTLLLF--------SGTIN----AWY 80
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlagiAAA 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  81 TGQWDITQLSYPPACLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKL----PPTTILLITSHSLSP---TL 153
Cdd:COG1007  192 LAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqLL 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 154 LMLMSTTSIALGGWMGLNQTQTRKIMAFSSISHIGWMTI-ITAHNPE-LTLLAFY--IYILMTASIFLTM-----NTTNT 224
Cdd:COG1007  272 LAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYllAYLFMNLGAFAVIlllsrKGGEA 351

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 169787769 225 LSLPTLMASWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAMTISLLSLLSLFFYLRLAY 298
Cdd:COG1007  352 EEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 1.76e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 106.24  E-value: 1.76e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769   23 SNHWMTAWIGLEINTLSIIPMI-SKSHHPRAIEATTKYFLVQAAASTLLLFSGTINAWYTGQWDITQLSYPP-------- 93
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALtgglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769   94 ---ACLLLTTAIAIKLGLAPFHFWFPEVLQGSSFT-TALLLSTVMKLPPttILLITSHSLSPT-------LLMLMSTTSI 162
Cdd:pfam00361  81 lllLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGG--YGLIRRSLLYLPsspfiqqILLILAIISM 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  163 ALGGWMGLNQTQTRKIMAFSSISHIGWMTII----TAHNPELTLLAFYIYILMTASIFL-----TMNTTNTLSLPTLMAS 233
Cdd:pfam00361 159 LLGSLAALVQTDIKRLLAYSSISHMGYMLIAlgagTIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGL 238

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 169787769  234 WTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 239 AKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 13-297 1.82e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 97.71  E-value: 1.82e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769   13 ILLGTTITITSNHWMTAWIGLEINTLSI-IPMISKSHHPRAIEATTKYFLVQAAASTLLLF--------SGTIN----AW 79
Cdd:TIGR01770 111 ALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFgisliygfTGSLNfedlLL 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769   80 YTGQWDITQLSYPPACLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLSPT------- 152
Cdd:TIGR01770 191 FLSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYILFGfseawqi 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  153 LLMLMSTTSIALGGWMGLNQTQTRKIMAFSSISHIGW-MTIITAHNPELTLLAFY---IYILMTASIFLTM------NTT 222
Cdd:TIGR01770 271 FLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKAVLFyifIYALMSLGAFGVLsllrsyKDE 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 169787769  223 NTLSLPTLMASWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAMTISLLSLLSLFFYLRLA 297
Cdd:TIGR01770 351 WIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 4.06e-149

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 423.85  E-value: 4.06e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769   1 MTPLAKLIFTSSILLGTTITITSNHWMTAWIGLEINTLSIIPMISKSHHPRAIEATTKYFLVQAAASTLLLFSGTINAWY 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  81 TGQWDITQLSYPPACLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLSPTLLMLMSTT 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 161 SIALGGWMGLNQTQTRKIMAFSSISHIGWMTIITAHNPELTLLAFYIYILMTASIFLTMNTTNTLSLPTLMASWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAMTISLLSLLSLFFYLRLAYCTTITLPPNPSNKTKQWYAKSS 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 169787769 321 TNTLIPTLTSLSVSLLPLTPMMLTTT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-344 2.76e-126

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 365.78  E-value: 2.76e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769   1 MTPLAKLIFTSSILLGTTITITSNHWMTAWIGLEINTLSIIPMISKSHHPRAIEATTKYFLVQAAASTLLLFSGTINAWY 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  81 TGQWDITQLSYPPACLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLSPTLLMLMSTT 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 161 SIALGGWMGLNQTQTRKIMAFSSISHIGWMTIITAHNPELTLLAFYIYILMTASIFLTMNTTNTLSLPTLMASWTKTPML 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAMTISLLSLLSLFFYLRLAYCTTITLPPNPSNKTKQWYAKSS 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                        330       340
                 ....*....|....*....|....
gi 169787769 321 TNTLIPTLTSLSVSLLPLTPMMLT 344
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTILN 344
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-344 1.89e-123

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 358.73  E-value: 1.89e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769   1 MTPLAKLIFTSSILLGTTITITSNHWMTAWIGLEINTLSIIPMISKSHHPRAIEATTKYFLVQAAASTLLLFSGTINAWY 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  81 TGQWDITQLSYPPACLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTtILLITSHSLSPTLLMLMSTT 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPF-ALILQIAPTNPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 161 SIALGGWMGLNQTQTRKIMAFSSISHIGWMTIITAHNPELTLLAFYIYILMTASIFLTMNTTNTLSLPTLMASWTKTPML 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAMTISLLSLLSLFFYLRLAYCTTITLPPNPSNKTKQWYAKSS 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330       340
                 ....*....|....*....|....*
gi 169787769 321 TNTL-IPTLTSLSVSLLPLTPMMLT 344
Cdd:MTH00135 320 QLTLpLAISTTATLMLLPLTPAILA 344
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-346 1.38e-113

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 333.35  E-value: 1.38e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769   1 MTPLAKLIFTSSILLGTTITITSNHWMTAWIGLEINTLSIIPMISKSHHPRAIEATTKYFLVQAAASTLLLFSGTINAWY 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  81 TGQWDITQLSYPPACLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLSPTLLMLMSTT 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 161 SIALGGWMGLNQTQTRKIMAFSSISHIGWMTIITAHNPELTLLAFYIYILMTASIFLTMNTTNTLSLPTLMASWTKTPML 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAMTISLLSLLSLFFYLRLAYCTTITLPPNPSNKTKQW-YAKS 319
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWqFENT 320

                        330       340
                 ....*....|....*....|....*..
gi 169787769 320 STNTLIPTLTSLSVSLLPLTPMMLTTT 346
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 8.10e-95

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 285.71  E-value: 8.10e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769   1 MTPLAKLIFTSSILLGTTITITSNHWMTAWIGLEINTLSIIPMISKSHHPRAIEATTKYFLVQAAASTLLLFSGTINAWY 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  81 TGQWDITQLSYPPACLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLSPTLLMLMSTT 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 161 SIALGGWMGLNQTQTRKIMAFSSISHIGWMTIITAHNPELTLLAFYIYILMTASIFLTMNTTNTLSLPTLMASWTKTPML 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAMTISLLSLLSLFFYLRLAYCTTITLPPNPSNKTKQWYAKSS 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|....*.
gi 169787769 321 TNTLIPTLTSLSVSLLPLTPMMLTTT 346
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 7-336 2.04e-85

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 261.79  E-value: 2.04e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769   7 LIFTSSILLGTTITITSNHWMTAWIGLEINTLSIIPMISKSHHPRAIEATTKYFLVQAAASTLLLFSGTINAWYTGQWDI 86
Cdd:MTH00041   7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSI 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  87 TQLSYPPACLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLSPTLLMLMSTTSIALGG 166
Cdd:MTH00041  87 NGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 167 WMGLNQTQTRKIMAFSSISHIGWMTIITAHNPELTLLAFYIYILMTASIFLTMNTTNTLSLPTLMASWTKTPMLSTTLML 246
Cdd:MTH00041 167 WGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFIL 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 247 TLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAMTISLLSLLSLFFYLRLAYCTTITLPPNPSNKTKQWYAKSSTNTLIP 326
Cdd:MTH00041 247 SILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGV 326

                        330
                 ....*....|
gi 169787769 327 TLTSLSVSLL 336
Cdd:MTH00041 327 ILSILSSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-343 1.74e-58

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 191.96  E-value: 1.74e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769   1 MTPLAKLIFTSSILLGTTITITSNHWMTAWIGLEINTLSIIPMISKSHHPRAIEATTKYFLVQAAASTLLLFSGTINAWy 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  81 tgqwdITQLSYPPACLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILlitSHSLSPTLLMLMSTT 160
Cdd:MTH00160  81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 161 SIALGGWMGLNQTQTRKIMAFSSISHIGWMTIITAHNPELTLLAFYIYILMTASIFLTMNTTNTLSLPTLMASWTKTPML 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAMTISLLSLLSLFFYLRLAYCTTITLppNPSNKTKQWYAKSS 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLN--YNKNKWNLKKKKNK 310

                        330       340
                 ....*....|....*....|...
gi 169787769 321 TNTLIPTLTSLSVSLLPLTPMML 343
Cdd:MTH00160 311 FSLILNFLSFISLFGLILSSLLF 333
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-315 1.46e-47

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 163.52  E-value: 1.46e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769   1 MTPLAKLIFTSSILLGTTITITSNHWMTAWIGLEINTLSIIPMISKSHHPRAIEATTKYFLVQAAASTLLLFSGTINAWY 80
Cdd:MTH00144   1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  81 TGQWDITqlsyppacLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPT-TILLITSHSLSPTLLMLMST 159
Cdd:MTH00144  81 SFSWFSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLfLLSNFLDLYWLAYLLCVISV 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 160 TSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIITAHNPELTLLAFYIYILMTASIFLTMNTTNTLSLpTLMASWTKTPM 239
Cdd:MTH00144 153 LSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSM-KDLGSLKPSYK 231

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 169787769 240 LSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAMTISLLSLLSLFFYLRLAYCTTITLPPNPSNKTKQW 315
Cdd:MTH00144 232 TGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKV 307
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-337 1.55e-44

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 155.71  E-value: 1.55e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769   7 LIFTSSILLGTTITITSNHWMTAWIGLEINTLSIIPMISKSHHPRAIEATTKYFLVQAAASTLLLFSGTInawytgQWDI 86
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  87 TQLSYPPACLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLSPTLLMLMSTTSIALGG 166
Cdd:MTH00011  83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 167 WMGLNQTQTRKIMAFSSISHIGWMTIITAHNPELTLLAFYIYILMTASIFLTMNTTNTLSLPTLMASWTKTPMLSTTLML 246
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 247 TLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAMTISLLSLLSLFFYLRLAYcTTITLPPNPSNKTkqwYAKSSTNTLIP 326
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSSLK---SAPYEPKTKIL 318

                        330
                 ....*....|..
gi 169787769 327 T-LTSLSVSLLP 337
Cdd:MTH00011 319 IsMCTLSLGLIP 330
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-302 2.16e-42

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 149.82  E-value: 2.16e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769   8 IFTSSILLGTTITITSNHWMTAWIGLEINTLSIIPMISKSHHPRAIEATTKYFLVQAAASTLLLFSGtinaWYTGQWDIT 87
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGG----SLSFSNLYL 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  88 QLSYppaCLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLSptLLMLMSTTSIALGGW 167
Cdd:MTH00197  78 SLLS---VVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFM--GLLICSVLSSLIGGI 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 168 MGLNQTQTRKIMAFSSISHIGWMTIITAHNPELTLLAFYIYILMTASIFLTMNTTNTLSLPTLMASWTKTPMLSTTLMLT 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 169787769 248 LLSLAGLPPLTGFLPKWLIIQELIKQELTTTAMTISLLSLLSLFFYLRLAYCTTI 302
Cdd:MTH00197 233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI 287
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 5.07e-29

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 114.74  E-value: 5.07e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  13 ILLGTTITITSNHWMTAWIGLEINTLSIIPMI-SKSHHPRAIEATTKYFLVQAAASTLLLFSGT-------------INA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGCAllcgttgglhlsyINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  79 WYTGQWDITQLSYPPACLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLitSHSLSPTLLMLMS 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 159 TTSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIITAHNP----ELTLLAFYIYILMTASIF---LTMNTTNTLsLPTLM 231
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFsiiLALNVYKNL-IIEFS 238

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 169787769 232 ASWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAMTISLLSLLSLFFYLRL 296
Cdd:MTH00196 239 GLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 6.66e-27

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 110.59  E-value: 6.66e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  14 LLGTTITITSNHWMTAWIGLEINTLSIIPMIS-KSHHPRAIEATTKYFLVQAAASTLLLF--------SGTIN----AWY 80
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlagiAAA 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  81 TGQWDITQLSYPPACLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKL----PPTTILLITSHSLSP---TL 153
Cdd:COG1007  192 LAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqLL 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 154 LMLMSTTSIALGGWMGLNQTQTRKIMAFSSISHIGWMTI-ITAHNPE-LTLLAFY--IYILMTASIFLTM-----NTTNT 224
Cdd:COG1007  272 LAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYllAYLFMNLGAFAVIlllsrKGGEA 351

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 169787769 225 LSLPTLMASWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAMTISLLSLLSLFFYLRLAY 298
Cdd:COG1007  352 EEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 1.76e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 106.24  E-value: 1.76e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769   23 SNHWMTAWIGLEINTLSIIPMI-SKSHHPRAIEATTKYFLVQAAASTLLLFSGTINAWYTGQWDITQLSYPP-------- 93
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALtgglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769   94 ---ACLLLTTAIAIKLGLAPFHFWFPEVLQGSSFT-TALLLSTVMKLPPttILLITSHSLSPT-------LLMLMSTTSI 162
Cdd:pfam00361  81 lllLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGG--YGLIRRSLLYLPsspfiqqILLILAIISM 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  163 ALGGWMGLNQTQTRKIMAFSSISHIGWMTII----TAHNPELTLLAFYIYILMTASIFL-----TMNTTNTLSLPTLMAS 233
Cdd:pfam00361 159 LLGSLAALVQTDIKRLLAYSSISHMGYMLIAlgagTIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGL 238

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 169787769  234 WTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 239 AKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 1.12e-23

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 101.44  E-value: 1.12e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  14 LLGTTITITSNHWMTAWIGLEINTLSIIPMIS-KSHHPRAIEATTKYFLVQAAASTLLLF--------SGTINAWYTGQW 84
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYgmsllygaTGSLSFAGIAKA 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  85 DITQLSYPP----ACLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKL----PPTTILLITSHSLSPT---L 153
Cdd:PRK05777 193 LADGSGNSLlllfGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqV 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 154 LMLMSTTSIALGGWMGLNQTQTRKIMAFSSISHIGWMTI-ITAHNPE-LTLLAFY--IYILMTASIF--LTMNTTNTLSL 227
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVgLAAGTAEgYSAVLFYllAYLFMTLGAFgvISLLRRKGGEA 352

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 169787769 228 PTLmASWT----KTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAMTISLLSLLSLFFYLRL 296
Cdd:PRK05777 353 ESI-SDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 13-297 1.82e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 97.71  E-value: 1.82e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769   13 ILLGTTITITSNHWMTAWIGLEINTLSI-IPMISKSHHPRAIEATTKYFLVQAAASTLLLF--------SGTIN----AW 79
Cdd:TIGR01770 111 ALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFgisliygfTGSLNfedlLL 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769   80 YTGQWDITQLSYPPACLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLSPT------- 152
Cdd:TIGR01770 191 FLSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYILFGfseawqi 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  153 LLMLMSTTSIALGGWMGLNQTQTRKIMAFSSISHIGW-MTIITAHNPELTLLAFY---IYILMTASIFLTM------NTT 222
Cdd:TIGR01770 271 FLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKAVLFyifIYALMSLGAFGVLsllrsyKDE 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 169787769  223 NTLSLPTLMASWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAMTISLLSLLSLFFYLRLA 297
Cdd:TIGR01770 351 WIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 13-267 6.31e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 96.24  E-value: 6.31e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  13 ILLGTTITITSNHWMTAWIGLEINTLSIIPMIS-KSHHPRAIEATTKYFLVQAAASTLLLFSGTINAWYTGQWDITQLSY 91
Cdd:MTH00199 106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINS 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  92 PPAC----LLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLitshSLSPT--LLMLMSTTSIALG 165
Cdd:MTH00199 186 ILTGdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILV----QIGPVtnVVLICAVLSIIYG 261

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 166 GWMGLNQTQTRKIMAFSSISHIGW----MTIITAHNPELTLLAFYIYILMTA---SIFLTMNTTNTLsLPTLMASWTKTP 238
Cdd:MTH00199 262 AIGALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSIcsfSIILSLKLTKGL-IVEVSGLSRKNP 340

                        250       260
                 ....*....|....*....|....*....
gi 169787769 239 MLSTTLMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199 341 VIALTLALTFLSIAGIPPLAGFLSKWLIL 369
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 14-271 1.19e-19

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 89.05  E-value: 1.19e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  14 LLGTTITITSNHWMTAWIGLEINTLSIIPMISKSHHPRAIEATTKYFLVQAAASTLLLFSGTINAWYTGQWDITQLS--- 90
Cdd:COG0651  117 LAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAarl 196

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  91 --YPP-----ACLLLTTAIAIKLGLAPFHFWFPEVL-QGSSFTTALLLSTVMKLPP-------TTILLITSHSLSPTLLM 155
Cdd:COG0651  197 aeLDPglllaAFALLLVGFGIKAALFPLHFWLPDAYpAAPSPVSALLSGLLTKVGVyailrvlTLLFGADPALFLGTLLL 276

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 156 LMSTTSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIITAHNPELTLLAFYIYI----LMTASIFLT----MNTTNTLSL 227
Cdd:COG0651  277 VLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLFLAagaiERATGTRDL 356

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 169787769 228 PTLMASWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELI 271
Cdd:COG0651  357 DKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAAL 400
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 15-272 3.61e-15

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 76.44  E-value: 3.61e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  15 LGTTITITSNHWMTAWIGLEINTLSIIPMISKSHHPRAI---------EATTKYFLVQAAASTLLLFS------------ 73
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGcalyfgftgneg 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  74 --GTINAWYTGQWDITQLSYPPACLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLppTTILLITSHSLSP 151
Cdd:MTH00198 279 mlGTILSATLETTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 152 TLLMLMSTTSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIITAHNPELTLLAFYIYI---LMTASIFLTM--------- 219
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAvtyLVSALASFTVictleefgt 436

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 169787769 220 -------------NTTNTLSLPTLMASWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIK 272
Cdd:MTH00198 437 rtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIK 502
ndhB CHL00049
NADH dehydrogenase subunit 2
 1-263 3.27e-13

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 70.42  E-value: 3.27e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769   1 MTPLAKLIFTSSILLGTTITITSNHWMTAWIGLEINTLSIIPMISKSHHP-RAIEATTKYFLVQAAASTLLL--FS---- 73
Cdd:CHL00049 108 MAITEFLLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFSwlyg 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  74 ---GTINAWYTGQWDI-TQLSYPPACLL----LTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLP----PTTI 141
Cdd:CHL00049 188 lsgGEIELQEIVNGLInTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAasalATRI 267

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 142 LLITSHSLSP---TLLMLMSTTSIALGGWMGLNQTQTRKIMAFSSISHIGWMTI-ITAHNPEL----TLLAFYIYILMT- 212
Cdd:CHL00049 268 FDIPFYFSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIgIIVGDSNDgyasMITYMLFYIFMNl 347

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 169787769 213 ---ASIFLTMNTTNTLSLPTLMASWTKTPMLSTTLMLTLLSLAGLPPLTGFLPK 263
Cdd:CHL00049 348 gtfACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGFFGK 401
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 38-267 3.09e-12

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 67.41  E-value: 3.09e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  38 LSIIPM---ISKSHHPRAIEATTKYFLVQAAASTLLLFSGTINAWYTGQW-----DITQLSYPPA-----CLLLTTAIAI 104
Cdd:COG1008  142 LMLIPMyflIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTaqlllFLAFFIAFAV 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 105 KLGLAPFHFWFPEVLQGSSFTTALLLSTVMK-----------LPpttILLITSHSLSPtLLMLMSTTSIALGGWMGLNQT 173
Cdd:COG1008  222 KVPMFPFHTWLPDAHVEAPTAGSVLLAGVLLkmggygllrfaLP---LFPEASAYFAP-LLAALGVIGIIYGALVALAQT 297

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 174 QTRKIMAFSSISHIGWMTI-ITAHNPELTLLAFYIYI---LMTASIFL----TMNTTNTLSLPTLMASWTKTPMLSTTLM 245
Cdd:COG1008  298 DLKRLIAYSSVSHMGFVLLgIFALNPLGLQGAVLQMVshgLITAALFLlvgvLYDRTHTRDIADLGGLAKRMPVLAALFL 377

                        250       260
                 ....*....|....*....|..
gi 169787769 246 LTLLSLAGLPPLTGFLPKWLII 267
Cdd:COG1008  378 LAALASLGLPGTSGFVGEFLVL 399
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 5-280 6.18e-11

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 63.48  E-value: 6.18e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769   5 AKLIFTSSILLGTTITITSNHWMTAWIGLEINTLS---IIPMISKshhpRAIEATTKYFLVQAAASTLLLFSGTINAWYT 81
Cdd:PRK08668  99 YFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSsfmMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  82 GQWDI----------TQLSYPPACLLLTTAIAI-KLGLAPFHFWFPEV--LQGSSFTTAL----------LLSTVMKLPP 138
Cdd:PRK08668 175 GTFDFadisqglindTSTGFALIVFLFLLAFGVaKAGIFPLHVWAPDAysEAPQSFSAVLsgqlsklgayGFLLVLYVLP 254

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 139 TTILLIT-----SHSLSPTLLMLMSTTSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIITAHNPELTLLAFYIYI---- 209
Cdd:PRK08668 255 GTKLFSEfgtyrGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVfnha 334

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 169787769 210 LMTASIFLTMNT----TNTLSLPTLMASWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAM 280
Cdd:PRK08668 335 LFKGLFFLIFAAviyrTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAF 409
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 2.70e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 61.27  E-value: 2.70e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  33 LEINTLSIIPMIS-KSHHPRAIEATTKYFLVQAAASTLLLFSgtINAWYtGQWDITQLSYPP-------------ACLLL 98
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLG--IALLY-GQYGTLNMAYLAvkmsenptvvakiALALF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  99 TTAIAIKLGLAPFHFWFPEVLQG--SSFTTALLLSTVMKLPPTTILLITSHSLS------PTLLMLMSTTSIALGGWMGL 170
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALARVLFSIYGPAinlatvGWVIIILGCLTMFVGVAMAV 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 171 NQTQTRKIMAFSSISHIGWM------TIITAHNPEL-----TLLAFYIY-----ILMTASIFLT----MNTTNTLSLPTL 230
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMllglgvGLAALGDPAMasygeIALAGGIYhivnhALYKALLFLTagavIYETGTRNLNEL 386

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 169787769 231 MASWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376 387 GGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-336 4.65e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 60.66  E-value: 4.65e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  33 LEINTLSIIPMISKSHHPRAIEATTKYFLVQAAASTLLLFSGTINAWYTGQWDITQLS--YPPACLLLT------TAIAI 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAgaLAENPTVVTafgfvlLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 105 KLGLAPFHFWFPEVLQG-SSFTTALLLSTVMKLPPTTILLITSHSLSP---------TLLMLMSTTSIALGGWMGLNQTQ 174
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTVFGGdfrfalglgWLLAVLALLSMLVGSLAALGQDD 294

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 175 TRKIMAFSSISHIGWMTIITAHNPELTLLAFYIYI----LMTASIFLT----MNTTNTLSLPTLMASWTKTPMLSTTLML 246
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhaLMKGALFLAagaiEVTYGTRRLSELSGLGRRMPLTAAAFAV 374

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 247 TLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAMTISLLSLLSLFFYLRLAYCTTITLPPNPSNKTkqwYAKSSTNTLIP 326
Cdd:PRK08375 375 ASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFFGPPPPGSEAP---KQEAPLGMLAP 451

                        330
                 ....*....|
gi 169787769 327 TLTSLSVSLL 336
Cdd:PRK08375 452 SLALALLSLL 461
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-279 2.39e-09

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 58.41  E-value: 2.39e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769   50 PRAIEATTKYFLVQAAASTLLLFSGTINAWYTGQW----DITQLSYPPAC-----LLLTTAIAIKLGLAPFHFWFPEV-L 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  120 QGSSFTTALLLSTVMKLPPTTILLI-------TSHSLSPtLLMLMSTTSIALGGWMGLNQTQTRKIMAFSSISHIGWMTI 192
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFnlplfpdASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  193 -ITAHNPELTLLAFYIYI---LMTASIFLTMNT----TNTLSLPTLMASWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKW 264
Cdd:TIGR01972 311 gIFSFNELGISGAVFQMIshgLITAALFLLVGVlyerAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEF 390

                         250
                  ....*....|....*
gi 169787769  265 LIIQELIKQELTTTA 279
Cdd:TIGR01972 391 LILLGSFKVNPVVAF 405
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 2.29e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 52.52  E-value: 2.29e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  48 HHPRAIEATTKYFLVQAAASTLLLFSGTINAWYTGQWDITQLSYPPAC--------LLLTTAIAIKLGLA------PFHF 113
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghpLFLITLILIFIGAAaksaqgPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 114 WFPEVLQGSSFTTALLLSTVMkLPPTTILLITSH---SLSPTLLMLMSTTSIA---LGGWMGLNQTQTRKIMAFSSISHI 187
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATM-VKAGVYLVARIHpifSGTEAWFILVSGTGMItmvLAGFLAFRQTDIKAILAYSTISQL 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 188 GWMTII----TAHNPELTLLAFYIYIL----MTASIFLTM----NTTNTLSLPTLMASWTKTPMLSTTLMLTLLSLAGLP 255
Cdd:PRK12649 315 AYLMTMygytTYHEPGLGVAAATFHLLnhatFKACLFLVAgivaHEAATRDIRKLGGLRKEMPITFIVASIAALAMAGIP 394


                 ....*...
gi 169787769 256 PLTGFLPK 263
Cdd:PRK12649 395 PLNGFLSK 402
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 81-263 4.31e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 51.85  E-value: 4.31e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  81 TGQWDITQL-SYPPACLLLTTAIAI-------KLGLAPFHFWFPEVLQGSSFTTALLLSTVM---------KLPPTtilL 143
Cdd:PRK12644 184 AGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG---F 260

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 144 ITSHSLSPTLLMLMSTTSIaLGGWMGLNQTQTRKIMAFSSISHIGWMTIITAHNPELTLLAFYIYI----LMTASIFLTM 219
Cdd:PRK12644 261 ADVPVWRPTVLVLGLATML-LGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLAMLlahaLFKAALFLVV 339

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 169787769 220 ----NTTNTLSLPTLMASWTKTPMLSTTLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644 340 giidHSTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-192 8.75e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 50.52  E-value: 8.75e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  13 ILLGTTITITSNHWMTAWIGLEINTLSIIPMISKSHHPRAIEATTKYFLVQAAA------STLLLFSGTINAWYTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  87 TQLS-----YPPACLLLT-----TAIAIKLGLAPFHFWFPEV-LQGSSFTTALLLSTVMKLPPTTILLITS-------HS 148
Cdd:PRK08676 191 TELAahaslLSPSVLGASflfifIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 169787769 149 LSPTLLMLMSTTSIALGGWMGLNQTQTRKIMAFSSISHIGWMTI 192
Cdd:PRK08676 271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLL 314
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 91-266 1.07e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 50.30  E-value: 1.07e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  91 YPPACLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLSPT-----LLMLMSTTSIALG 165
Cdd:PRK12647 194 YLAILLLVLGGAFTKSAQFPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTplwqtILPLFGGLTMLTG 273

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 166 GWMGLNQTQTRKIMAFSSISHIGWMTIITAHNPELTLLAFYIYI----LMTASIFLTMNT----TNTLSLPTLMASWTKT 237
Cdd:PRK12647 274 ALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLvahsLYKGALFMVAGIidheTGTRDITKLGGLRRAM 353

                        170       180
                 ....*....|....*....|....*....
gi 169787769 238 PMLSTTLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK12647 354 PITAAAALLAALSMAGLPPLFGFLAKELI 382
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 8-192 3.75e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 48.39  E-value: 3.75e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769   8 IFTSSILLgttiTITSNHWMTAWIGLEINTLSIIPMISKSHHPRAIEATTKYFLVQAAASTLLLFsGTINAWYTGQwdiT 87
Cdd:PRK06458 116 LFLFTMLL----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALF-GTILVYANAA---T 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  88 QLSYPPACLLLTTAIAI----------------------KLGLAPFHFWFPEV-LQGSSFTTALLLSTVMKLPPTTIL-- 142
Cdd:PRK06458 188 VMGDGEMAILWTELLKHaslldptlmklafvflligfgtKVGLFPMHAWLPDAhSEAPSPVSALLSGVLLNVALYAVLry 267

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 169787769 143 -LITSHSLSP----TLLMLMSTTSIALGGWMGLNQTQTRKIMAFSSISHIGWMTI 192
Cdd:PRK06458 268 yILIDAAIGSdfpgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 38-192 4.79e-06

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 48.27  E-value: 4.79e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  38 LSIIPM---ISKSHHPRAIEATTKYFLVQAAASTLLLFS----GTINAWYTGQWDITQLSYPPACLLLTT--------AI 102
Cdd:PRK05846 142 AMLIPMyflIGVWGGKNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLLNLPLPPGVQYwlflaffiAF 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 103 AIKLGLAPFHFWFPEVLQGSSFTTALLLSTVM-----------KLPpttILLITSHSLSPtLLMLMSTTSIALGGWMGLN 171
Cdd:PRK05846 222 AVKMPMFPLHTWLPDAHVQAPTAGSVLLAGILlkmgaygllrfSLP---LFPDASHEFAP-IIITLGVIAIIYGALVALA 297

                        170       180
                 ....*....|....*....|.
gi 169787769 172 QTQTRKIMAFSSISHIGWMTI 192
Cdd:PRK05846 298 QTDIKKLIAYSSISHMGFVTL 318
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 59-188 1.50e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 46.65  E-value: 1.50e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  59 YFLVQAAASTLLLFSGTINAWY-TGQWDITQLSYPPAC-----LLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLST 132
Cdd:PRK08667 166 FYFVMTQLSTVFLMLGIIVLFIqTGSFELSPLGASAGIlslvfLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSG 245

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 169787769 133 VM-KLPPTTILLITSHSLSP-----TLLMLMSTTSIALGGWMGLNQTQTRKIMAFSSISHIG 188
Cdd:PRK08667 246 VMlKVAVYGLVRFLMDVLSPelwwgVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIG 307
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-230 1.69e-05

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 46.56  E-value: 1.69e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  55 ATTKYFLVQAAASTLLLFSGTINAWYTGQ--WDITQL---SYPPACLLLT-----TAIAIKLGLAPFHFWFPEVLQGSSF 124
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELgakSYPLALELLLyagflIAFGVKLPIFPLHTWLPDAHGEASA 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 125 TTALLLSTVM-KLPPTTI------LLITSHSLSPTLLMLMSTTSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIITAHN 197
Cdd:PRK12561 218 PVSMILAGVLlKMGGYALirfnvqMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGIAAF 297

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 169787769 198 PEL----TLLAFYIYILMTASIFL----TMNTTNTLSLPTL 230
Cdd:PRK12561 298 TDLgisgAMLQMISHGLIAAALFFltgvTYERTHTLSIPNM 338
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 48-271 2.42e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 45.91  E-value: 2.42e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  48 HHPRAIEATTKYFLVQAAASTLLLFSGTINAWYTGQWDITQLS-----------YPPACLLLTTAIAIKLGLAPFHFWFP 116
Cdd:COG1009  156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLaaaptilssplLTLILLLLLLGAFGKSAQFPLHFWLP 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 117 EVLQGSSFTTALLLSTVMKlpptTI---LLITSH---SLSPTLLMLMSTTSIA---LGGWMGLNQTQTRKIMAFSSISHI 187
Cdd:COG1009  236 DAMEGPTPVSALLHAATMV----KAgvyLLARLSplfALSPVWLTVVAIIGAItalFAALIALAQTDIKRVLAYSTVSQL 311

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 188 GWMTIITAhnpeLTLLAFYIYILMT-----ASIFLT----MNTTNTLSLPTLMASWTKTPMLSTTLMLTLLSLAGLPPLT 258
Cdd:COG1009  312 GYMFLALG----VGAYVAALFHLLThaffkALLFLGagsvIHATGTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFA 387

                        250
                 ....*....|...
gi 169787769 259 GFLPKWLIIQELI 271
Cdd:COG1009  388 GFFSKEAILEAAL 400
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 2.60e-05

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 45.81  E-value: 2.60e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  50 PRAIEATTKYFLVQAAASTLLLF---------SGTINAWYTGQWDITQLSYPPACLLL--TTAIAIKLGLAPFHFWFPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgssllyglsGGSTQLSAIALALITSPSLGLALALVfvIAGIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 119 LQGSSFTTALLLSTVMKLPPTTI---LLITSHSLSPT----LLMLMSTTSIALGGWMGLNQTQTRKIMAFSSISHIGWMT 191
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAGFALairLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 192 IITAHNPELTLLAFYIYILmtasIFLTMN------------TTNTLSLPTLMASWTKTPMLSTTLMLTLLSLAGLPPLTG 259
Cdd:PRK02504 317 IGLVAGTEAGYASMVFYLL----AYLFMNlgafacvilfslRTGTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAG 392


                 ....
gi 169787769 260 FLPK 263
Cdd:PRK02504 393 FFGK 396
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-268 4.62e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 44.96  E-value: 4.62e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  96 LLLTTAIAIKLGLAPFHFWFPEvlqgsSFTTALLLST-----------VMKLPPTTILLITSHSLSpTLLMLMSTTSIAL 164
Cdd:PRK12665 213 AVLLVAFGIKAAVFPLSFWLPD-----SYPTAPAPVTavfaglltkvgVYAIIRTHTLLFPGGGLD-TLLMVVALLTMVV 286

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 165 GGWMGLNQTQTRKIMAFSSISHIGWMTIITAHNPELTLLA--FYI--YILMTASIFLTM----NTTNTLSLPTLMASWTK 236
Cdd:PRK12665 287 GILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGaiYYVahHITVQTTLFLVVglieRQAGSSSLRRLGGLAKA 366

                        170       180       190
                 ....*....|....*....|....*....|..
gi 169787769 237 TPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12665 367 SPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-340 5.09e-05

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 40.32  E-value: 5.09e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 169787769  291 FFYLRLAYCTTITLPPNPSNKTKQWYAKSSTNT-LIPTLTSLSVSLLPLTP 340
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTlLLPTLTTLSILLLPLTP 51
PRK12650 PRK12650
DUF4040 family protein;
98-263 5.71e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 45.03  E-value: 5.71e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  98 LTTAIAIKLGLA--------PFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLSPT-----LLMLMSTTSIAL 164
Cdd:PRK12650 206 LTTVVAVLIAVAaftksaqfPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDVavwnwLLIIVGMITALM 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 165 GGWMGLNQTQTRKIMAFSSISHIGWMTIITAHNPELTLLAFYIYI----LMTASIFLTM----NTTNTLSLPTLMASWTK 236
Cdd:PRK12650 286 GAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTlahaLFKSSLFMLIgvvdHQAGTRDIRRLGSLWRR 365

                        170       180
                 ....*....|....*....|....*..
gi 169787769 237 TPMLSTTLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12650 366 MPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
96-268 3.86e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 42.24  E-value: 3.86e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  96 LLLTTAIAIKLGLAPFhFWFPEVLQGSSFTTALLLSTVMK-------LPPTTILLITSHSLSPTLLMLMSTTSIALGGWM 168
Cdd:PRK12663 211 LLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVIGALG 289

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 169 GLNQTQTRKIMAFSSISHIGWMTIITAHNPELTL-----LAFYIYILMTASIFLT---MNTTNTLSLPTLMASWTKTPML 240
Cdd:PRK12663 290 ALAYKDIRRIAGYQVISSIGFILLGLALGTPAGIngaifYLVHDMVVKTALFLIAgslVRLTGYRSLQYLGGLYRKEPLF 369

                        170       180
                 ....*....|....*....|....*...
gi 169787769 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12663 370 GALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 23-272 4.95e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 41.64  E-value: 4.95e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  23 SNHWMTAWIGLEINTLSIIPMISKSHHPRAIEATTKYFLVQAAASTLLLF--------SGTINAwyTGQWDITQLSYPP- 93
Cdd:PRK12662 129 SNDVFNIYVFLEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIgigflyaiTGTLNM--GDMFLIIQDLPTNr 206

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  94 ----ACLLLTTAIAIKLGLAPFHFWFPEVLQGS-SFTTALLLSTVMKLPPTTIL----------LITSHSLSPTLLMLMS 158
Cdd:PRK12662 207 aiqiGVLFIMVGLFIKAALFPFHKWLIQAYSEApSFISVFFSGTSTKVMIYLIIrivydvfkanFVFTTLPFNNVFMILA 286

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 159 TTSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIITAHNPELTLLAFYIYI----LMTASIFLTMNTT----NTLSLPTL 230
Cdd:PRK12662 287 ALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsIVKSALFMVSGSIsyhfGTTKLEDC 366

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 169787769 231 MASWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIK 272
Cdd:PRK12662 367 LNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIK 408
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
60-268 6.36e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 41.62  E-value: 6.36e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  60 FLVQAAASTLLLFSGTINAWYTGQwdITQ-LSYPPACLLLTTAI---AIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMK 135
Cdd:PRK07363 171 LLVLAAFLGIVWLSGSTSFDYDAI--STQnLSLNTQLILLTGLLlgfGIKIPLVPLHTWLPDAYTEASPAVAILLGGVLA 248

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 136 LPPTTILLI--------TSHSLSPTLlMLMSTTSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIITAHNPELTLLA--- 204
Cdd:PRK07363 249 KLGTYGLLRfglqlfpqTWSLVAPGL-AIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLLGava 327

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 169787769 205 -FYIYILMTASIF-------LTMNTTNTLSLPTLMASWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK07363 328 qMISHGLILALLFhlvgiveRKVGTRDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVAEFIVFQ 399
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
4-190 6.44e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 41.61  E-value: 6.44e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769   4 LAKLIFTssiLLGTTITITSNHW---MTAW--IGLEINTLsiipMISKSHHPRAIEATTKYFLVQAAASTLLLFSGTINA 78
Cdd:PRK08168 103 VRALAGV---LAAVHLLVLSDHLlvlIAAWaaISLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAY 175

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  79 WYTGQWDITQL-----SYPP------ACLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTIL----L 143
Cdd:PRK08168 176 LEVGSLSLSALwahlaAQGAspslqaAALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAGVVNLGGFVLIrfapL 255

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 169787769 144 ITSHSLSPTLLMLMSTTSIALGGWMGLNQTQTRKIMAFSSISHIGWM 190
Cdd:PRK08168 256 LEQAPPARWLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFM 302
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 96-272 9.65e-04

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 40.97  E-value: 9.65e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  96 LLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTV-MKLPPTTILLITSHSLSPTL-----LMLMSTTSIALGGWMG 169
Cdd:PRK08042 184 LLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTVvMKIGLLGILTLSLLGGNAPLwwgvaLLVLGMITAFVGGLYA 263

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 170 LNQTQTRKIMAFSSISHIG--------WMTIITAHNPELTLLAFY--IYILMTASIFLTM---------NTTNTLSLPTL 230
Cdd:PRK08042 264 LMEHNIQRLLAYHTLENIGiillglgaGVTGIALEQPALIALGLVggLYHLLNHSLFKSVlflgagsvwFRTGHRDIEKL 343

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 169787769 231 MASWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIK 272
Cdd:PRK08042 344 GGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFK 385
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-204 3.01e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 39.30  E-value: 3.01e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  55 ATTKYFLVQAAASTLLLFSGTINAWYTGqwdITQLSYPPAC---------LLLTTAI----AIKLGLAPFHFWFPEVLQG 121
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSG---ASSFDYEPLRshtlplstqLLLLAPIlvgfGIKIPLVPFHTWLPDAHVE 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 122 SSFTTALLLSTVMKLPPTTILLITSHSLSPTL-------LMLMSTTSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIIT 194
Cdd:PRK06473 235 ASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAwvylapwLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAA 314

                        170
                 ....*....|
gi 169787769 195 AHNPELTLLA 204
Cdd:PRK06473 315 AAATPLSILA 324
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 111-268 3.24e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 39.17  E-value: 3.24e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 111 FHFWFPEVLQGSSFTTALLLSTVMkLPPTTILLITSHSL--SPTLLMLMSTTSIALGGW----MGLNQTQTRKIMAFSSI 184
Cdd:MTH00032 244 LHTWLPDAMEGPTPVSALIHAATM-VTAGVFLMIRSFPLfeKAPLTLLIITIFGALTAFfaatVGLVQNDLKKVIAYSTC 322

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 185 SHIGWMTIIT----AHNPELTLLA----FYIYILMTASIFLTMNTTNTLSLPTLMASWTKTPMLSTTLMLTLLSLAGLPP 256
Cdd:MTH00032 323 SQLGYMVLIIgiegSHNVGLFHLVnhafFKALLFLSAGSVIHSTTVDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPY 402

                        170
                 ....*....|..
gi 169787769 257 LTGFLPKWLIIQ 268
Cdd:MTH00032 403 LTGFYSKDLILE 414
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
 15-273 5.73e-03

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 38.62  E-value: 5.73e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  15 LGTTITITSNHWMTAWIGLEINTLS---IIPMISKSHHPRAIeattkyFLVQAAASTLLLFSGTINAWY-TGQWDITQLS 90
Cdd:PRK06459  83 LGMAIVLTSDNYLLFLAGWEIMTIPsyvAIALTKKNKRPAFV------FMAFGELSTVLILAGFAWAFIiSGTTNFSYLP 156

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  91 YPPACLLLTTAIAIKLGLAPFHF--WFPEVLQGSSFTTALLLSTVMKLppTTILLITS-HSLSPT--------LLMLMST 159
Cdd:PRK06459 157 SPVPLILASFGFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTL--MGVYGILKmTILTQTipigyfglTILAIGA 234

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 160 TSIALGGWMGLNQTQTRKIMAFSSISHIGWM-----TIITAHNPELTLLAFYIYILMTAS---------IFLTMNTTNTL 225
Cdd:PRK06459 235 FSILFGALYAYVSENVKGLLAFSTIENNGAIlvalgLYMVTKQLITSIEHFSLITVILYSfahsvaktgLFLSSGLQEKQ 314

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 169787769 226 SLPTLMAswTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQ 273
Cdd:PRK06459 315 SITYSKK--IRNRWIELGLTLLASSLSGLLPNIGGVASWLLLESLFMF 360
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-268 6.14e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 38.47  E-value: 6.14e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769  34 EINTLSIIPMISKSHHPRAIEATTKYFLVQAAASTLLLFSGTINAWYTGQWDITQLSY--------PP---ACLLLTTAI 102
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDIHNallvnptsPViygGLLLLIFGL 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 103 AIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLI--------TSHSLSPTLLMLMSTTSIALGGWMGLNQTQ 174
Cdd:PRK06277 210 LYGSGLPPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLVifklfgglSYFPSAQGVLIALSVLAMVFGVVMALLQTD 289

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787769 175 TRKIMAFSSISHIGWMTIITAHNPELTLLAFYIY----ILMTASIFL----TMNTTNTLSLPTLMASWTKTPMLSTTLML 246
Cdd:PRK06277 290 YKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHainhVIYKSALFLgagiVSYRTKTSNLRKLGGLLPVMPVVAFMVLC 369

                        250       260
                 ....*....|....*....|..
gi 169787769 247 TLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK06277 370 AKLAISGVPPFNGFQSKLMLAQ 391
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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