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Conserved domains on  [gi|169787781|gb|ACA80292|]
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NADH dehydrogenase subunt 2 (mitochondrion) [Touit batavicus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.02e-144

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 412.68  E-value: 1.02e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781   1 MTPLTNLISTLSIMLGTTITITSNHWMTAWAGLEINTLSIIPMISKLHHPRAIEAATKYFLVQATASALLLFSSMMNAWN 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  81 TGQWDITLLTYPPSCFLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTMMKLPPTTILLITSHSLNPTLLTTMSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLTFYAYVLMTTAIFLTMNTTNTLKLSTLMTSWTKTPTL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 241 NTTLMLTLLSLAGLPPLTGFLPKWIIIQELIKQEMIMTATIISMLSLLGLFFYLRLTYCTTITLPPNPSNKMKQWSPKNP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 169787781 321 TNPLIPMLTSLSILLLPLSPMTLTTT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.02e-144

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 412.68  E-value: 1.02e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781   1 MTPLTNLISTLSIMLGTTITITSNHWMTAWAGLEINTLSIIPMISKLHHPRAIEAATKYFLVQATASALLLFSSMMNAWN 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  81 TGQWDITLLTYPPSCFLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTMMKLPPTTILLITSHSLNPTLLTTMSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLTFYAYVLMTTAIFLTMNTTNTLKLSTLMTSWTKTPTL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 241 NTTLMLTLLSLAGLPPLTGFLPKWIIIQELIKQEMIMTATIISMLSLLGLFFYLRLTYCTTITLPPNPSNKMKQWSPKNP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 169787781 321 TNPLIPMLTSLSILLLPLSPMTLTTT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-296 2.78e-28

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 114.44  E-value: 2.78e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  10 TLSIMLGTTITITSNHWMTAWAGLEINTLSIIPMIS-KLHHPRAIEAATKYFLVQATASALLLF--------------SS 74
Cdd:COG1007  108 LLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgslnlAG 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  75 MMNAWNTGQWDITLLTypPSCFLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTMMKL----PPTTILLITSHSLN 150
Cdd:COG1007  188 IAAALAAGGANSPLLL--LGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLA 265

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 151 P---TLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTL--LTFY--AYVLMTTAIFLTM---- 219
Cdd:COG1007  266 AdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYllAYLFMNLGAFAVIllls 345

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 169787781 220 -NTTNTLKLSTLMTSWTKTPTLNTTLMLTLLSLAGLPPLTGFLPKWIIIQELIKQEMIMTATIISMLSLLGLFFYLRL 296
Cdd:COG1007  346 rKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRV 423
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 2.58e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 95.07  E-value: 2.58e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781   23 SNHWMTAWAGLEINTLSIIPMI-SKLHHPRAIEAATKYFLVQATASALLLFSSMMNAWNTGQWDIT-LLTYPPSC----- 95
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDeLSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781   96 -----FLLTTAIAIKLGLTPFHFWFPEVLQGSSLT-TALLLSTMMKLPPttILLITSHSLNPT-------LLTTMSIMSI 162
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGG--YGLIRRSLLYLPsspfiqqILLILAIISM 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  163 ALGGWMGLNQTQTRKILAFSSISHLGWMTIII----IYNPKLTLLTFYAYVLMTTAIFL--------TMNTTNTLKLSTL 230
Cdd:pfam00361 159 LLGSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsviyrRVHTRNIRDYGGL 238

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 169787781  231 mtsWTKTPTLNTTLMLTLLSLAGLPPLTGFLPKWIIIQ 268
Cdd:pfam00361 239 ---AKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 6-296 1.28e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.40  E-value: 1.28e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781    6 NLISTLSIMLgttiTITSNHWMTAWAGLEINTLSI-IPMISKLHHPRAIEAATKYFLVQATASALLLFSSMM-------- 76
Cdd:TIGR01770 108 LLFALLGIFL----LVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLiygftgsl 183

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781   77 ------NAWNTGQWDITLLTYppSCFLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTMMKLPPTTILL------- 143
Cdd:TIGR01770 184 nfedllLFLSNGMLNISLLLL--GIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyil 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  144 ITSHSLNPTLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTL--LTFY--AYVLMTTAIFLTM 219
Cdd:TIGR01770 262 FGFSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYifIYALMSLGAFGVL 341

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  220 ------NTTNTLKLSTLMTSWTKTPTLNTTLMLTLLSLAGLPPLTGFLPKWIIIQELIKQEMIMTATIISMLSLLGLFFY 293
Cdd:TIGR01770 342 sllrsyKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYY 421


                  ...
gi 169787781  294 LRL 296
Cdd:TIGR01770 422 LRV 424
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.02e-144

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 412.68  E-value: 1.02e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781   1 MTPLTNLISTLSIMLGTTITITSNHWMTAWAGLEINTLSIIPMISKLHHPRAIEAATKYFLVQATASALLLFSSMMNAWN 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  81 TGQWDITLLTYPPSCFLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTMMKLPPTTILLITSHSLNPTLLTTMSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLTFYAYVLMTTAIFLTMNTTNTLKLSTLMTSWTKTPTL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 241 NTTLMLTLLSLAGLPPLTGFLPKWIIIQELIKQEMIMTATIISMLSLLGLFFYLRLTYCTTITLPPNPSNKMKQWSPKNP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 169787781 321 TNPLIPMLTSLSILLLPLSPMTLTTT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-327 1.98e-120

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 350.76  E-value: 1.98e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781   1 MTPLTNLISTLSIMLGTTITITSNHWMTAWAGLEINTLSIIPMISKLHHPRAIEAATKYFLVQATASALLLFSSMMNAWN 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  81 TGQWDITLLTYPPSCFLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTMMKLPPTTILLITSHSLNPTLLTTMSIM 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLTFYAYVLMTTAIFLTMNTTNTLKLSTLMTSWTKTPTL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 241 NTTLMLTLLSLAGLPPLTGFLPKWIIIQELIKQEMIMTATIISMLSLLGLFFYLRLTYCTTITLPPNPSNKMKQWSPKNP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320


                 ....*..
gi 169787781 321 TNPLIPM 327
Cdd:MTH00070 321 TNNLLSL 327
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-324 4.96e-119

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 347.18  E-value: 4.96e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781   1 MTPLTNLISTLSIMLGTTITITSNHWMTAWAGLEINTLSIIPMISKLHHPRAIEAATKYFLVQATASALLLFSSMMNAWN 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  81 TGQWDITLLTYPPSCFLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTMMKLPPTtILLITSHSLNPTLLTTMSIM 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPF-ALILQIAPTNPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLTFYAYVLMTTAIFLTMNTTNTLKLSTLMTSWTKTPTL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 241 NTTLMLTLLSLAGLPPLTGFLPKWIIIQELIKQEMIMTATIISMLSLLGLFFYLRLTYCTTITLPPNPSNKMKQW--SPK 318
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWrlPST 319


                 ....*.
gi 169787781 319 NPTNPL 324
Cdd:MTH00135 320 QLTLPL 325
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-326 5.63e-107

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 316.79  E-value: 5.63e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781   1 MTPLTNLISTLSIMLGTTITITSNHWMTAWAGLEINTLSIIPMISKLHHPRAIEAATKYFLVQATASALLLFSSMMNAWN 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  81 TGQWDITLLTYPPSCFLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTMMKLPPTTILLITSHSLNPTLLTTMSIM 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLTFYAYVLMTTAIFLTMNTTNTLKLSTLMTSWTKTPTL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 241 NTTLMLTLLSLAGLPPLTGFLPKWIIIQELIKQEMIMTATIISMLSLLGLFFYLRLTYCTTITLPPNPSN-KMKQWSPKN 319
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNmKMKWQFENT 320


                 ....*..
gi 169787781 320 PTNPLIP 326
Cdd:MTH00105 321 KPMTLLP 327
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-327 8.30e-88

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 267.60  E-value: 8.30e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781   1 MTPLTNLISTLSIMLGTTITITSNHWMTAWAGLEINTLSIIPMISKLHHPRAIEAATKYFLVQATASALLLFSSMMNAWN 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  81 TGQWDITLLTYPPSCFLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTMMKLPPTTILLITSHSLNPTLLTTMSIM 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLTFYAYVLMTTAIFLTMNTTNTLKLSTLMTSWTKTPTL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 241 NTTLMLTLLSLAGLPPLTGFLPKWIIIQELIKQEMIMTATIISMLSLLGLFFYLRLTYCTTITLPPNPSNKMKQWSPKNP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320


                 ....*..
gi 169787781 321 TNPLIPM 327
Cdd:MTH00200 321 SNLLVGL 327
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-326 7.96e-86

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 262.94  E-value: 7.96e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781   1 MTPLTNLISTLSIMLGTTITITSNHWMTAWAGLEINTLSIIPMISKLHHPRAIEAATKYFLVQATASALLLFSSMMNAWN 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  81 TGQWDITLLTYPPSCFLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTMMKLPPTTILLITSHSLNPTLLTTMSIM 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLTFYAYVLMTTAIFLTMNTTNTLKLSTLMTSWTKTPTL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 241 NTTLMLTLLSLAGLPPLTGFLPKWIIIQELIKQEMIMTATIISMLSLLGLFFYLRLTYCTTITLPPNPSNKMKQWSPKNP 320
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320


                 ....*.
gi 169787781 321 TNPLIP 326
Cdd:MTH00041 321 ITVYGV 326
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-327 3.37e-54

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 180.79  E-value: 3.37e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781   1 MTPLTNLISTLSIMLGTTITITSNHWMTAWAGLEINTLSIIPMISKLHHPRAIEAATKYFLVQATASALLLFSSMMNAWN 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  81 TGqwditlLTYPPSCFLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTMMKLPPTTILlitSHSLNPTLLTTMSIM 160
Cdd:MTH00160  82 LM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLTFYAYVLMTTAIFLTMNTTNTLKLSTLMTSWTKTPTL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 241 NTTLMLTLLSLAGLPPLTGFLPKWIIIQELIKQEMIMTATIISMLSLLGLFFYLRLTYCTTITLppNPSNKMKQWSPKNP 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLN--YNKNKWNLKKKKNK 310


                 ....*..
gi 169787781 321 TNPLIPM 327
Cdd:MTH00160 311 FSLILNF 317
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 6-302 7.57e-48

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 164.29  E-value: 7.57e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781   6 NLISTLSIMLGTTITITSNHWMTAWAGLEINTLSIIPMISKLHHPRAIEAATKYFLVQATASALLLFSSMMNAWNTGQWD 85
Cdd:MTH00144   6 NLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWF 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  86 ITLLtyppscflLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTMMKLPPttILLITSHSLNPTLLTT---MSIMSI 162
Cdd:MTH00144  86 SMSL--------LLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAP--LFLLSNFLDLYWLAYLlcvISVLSA 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 163 ALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLTFYAYVLMTTAIFLTMNTTNTLKLSTlMTSWTKTPTLNT 242
Cdd:MTH00144 156 LVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKD-LGSLKPSYKTGL 234

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 243 TLMLTLLSLAGLPPLTGFLPKWIIIQELIKQEMIMTATIISMLSLLGLFFYLRLTYCTTI 302
Cdd:MTH00144 235 SIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-319 1.32e-43

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 153.01  E-value: 1.32e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781   1 MTPLTNLISTLSIMlGTTITITSNHWMTAWAGLEINTLSIIPMISKLHHPRAIEAATKYFLVQATASALLLFSSMMnawn 80
Cdd:MTH00011   4 TFPTMFLFSSTMTL-GTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM---- 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  81 tgQWDITLLTYPPSCFLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTMMKLPPTTILLITSHSLNPTLLTTMSIM 160
Cdd:MTH00011  79 --MWSFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAM 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLTFYAYVLMTTAIFLTMNTTNTLKLSTLMTSWTKTPTL 240
Cdd:MTH00011 157 SALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTT 236

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 169787781 241 NTTLMLTLLSLAGLPPLTGFLPKWIIIQELIKQEMIMTATIISMLSLLGLFFYLRLTYCTTITLPPNPSNKMKQWSPKN 319
Cdd:MTH00011 237 SMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPTFSSLKSAPYEPKT 315
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 11-313 1.35e-41

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 147.51  E-value: 1.35e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  11 LSIMLGTTITITSNHWMTAWAGLEINTLSIIPMISKLHHPRAIEAATKYFLVQATASALLLFSSMMNAWNtgqwditLLT 90
Cdd:MTH00197   5 FIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSN-------LYL 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  91 YPPSCFLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTMMKLPPTTILLITSHslNPTLLTTMSIMSIALGGWMGL 170
Cdd:MTH00197  78 SLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGGM 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 171 NQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLTFYAYVLMTTAIFLTMNTTNTLKLSTLMTSWTKTPTLNTTLMLTLLS 250
Cdd:MTH00197 156 NQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLS 235

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 169787781 251 LAGLPPLTGFLPKWIIIQELIKQEMIMTATIISMLSLLGLFFYLRLTYCTTITLPPNPSNKMK 313
Cdd:MTH00197 236 LGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMK 298
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-296 2.78e-28

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 114.44  E-value: 2.78e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  10 TLSIMLGTTITITSNHWMTAWAGLEINTLSIIPMIS-KLHHPRAIEAATKYFLVQATASALLLF--------------SS 74
Cdd:COG1007  108 LLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgslnlAG 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  75 MMNAWNTGQWDITLLTypPSCFLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTMMKL----PPTTILLITSHSLN 150
Cdd:COG1007  188 IAAALAAGGANSPLLL--LGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLA 265

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 151 P---TLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTL--LTFY--AYVLMTTAIFLTM---- 219
Cdd:COG1007  266 AdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYllAYLFMNLGAFAVIllls 345

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 169787781 220 -NTTNTLKLSTLMTSWTKTPTLNTTLMLTLLSLAGLPPLTGFLPKWIIIQELIKQEMIMTATIISMLSLLGLFFYLRL 296
Cdd:COG1007  346 rKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRV 423
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 1.31e-27

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 110.89  E-value: 1.31e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  13 IMLGTTITITSNHWMTAWAGLEINTLSIIPMI-SKLHHPRAIEAATKYFLVQATASALLLFSSMMNAWNTGQWDITLL-- 89
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLSYInl 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  90 -----------TYPPSCFLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTMMKLPPTTILLitSHSLNPTLLTTMS 158
Cdd:MTH00196  82 vlnsgqsfssvSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 159 IMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIII----IYNPKLTLLTFYAYVLMTTAIFLTMNTTNTLK--LSTLMT 232
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 169787781 233 SWTKTPTLNTTLMLTLLSLAGLPPLTGFLPKWIIIQELIKQEMIMTATIISMLSLLGLFFYLRL 296
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
7-296 1.35e-24

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 103.75  E-value: 1.35e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781   7 LISTLSIMlgttITITSNHWMTAWAGLEINTLSIIPMIS-KLHHPRAIEAATKYFLVQATASALLLFSSMM--------- 76
Cdd:PRK05777 110 LFALLGMM----VMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLlygatgsls 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  77 -----NAWNTGQWDITLLTYppSCFLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTMMKL----PPTTILLITSH 147
Cdd:PRK05777 186 fagiaKALADGSGNSLLLLF--GLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFG 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 148 SLNPT---LLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTL--LTFY--AYVLMTTAIF--LT 218
Cdd:PRK05777 264 GLSEDwqqVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYllAYLFMTLGAFgvIS 343

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 219 MNTTNTLKLSTLmTSWT----KTPTLNTTLMLTLLSLAGLPPLTGFLPKWIIIQELIKQEMIMTATIISMLSLLGLFFYL 294
Cdd:PRK05777 344 LLRRKGGEAESI-SDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYL 422


                 ..
gi 169787781 295 RL 296
Cdd:PRK05777 423 RV 424
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 2.58e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 95.07  E-value: 2.58e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781   23 SNHWMTAWAGLEINTLSIIPMI-SKLHHPRAIEAATKYFLVQATASALLLFSSMMNAWNTGQWDIT-LLTYPPSC----- 95
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDeLSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781   96 -----FLLTTAIAIKLGLTPFHFWFPEVLQGSSLT-TALLLSTMMKLPPttILLITSHSLNPT-------LLTTMSIMSI 162
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGG--YGLIRRSLLYLPsspfiqqILLILAIISM 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  163 ALGGWMGLNQTQTRKILAFSSISHLGWMTIII----IYNPKLTLLTFYAYVLMTTAIFL--------TMNTTNTLKLSTL 230
Cdd:pfam00361 159 LLGSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsviyrRVHTRNIRDYGGL 238

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 169787781  231 mtsWTKTPTLNTTLMLTLLSLAGLPPLTGFLPKWIIIQ 268
Cdd:pfam00361 239 ---AKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 6-296 1.28e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.40  E-value: 1.28e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781    6 NLISTLSIMLgttiTITSNHWMTAWAGLEINTLSI-IPMISKLHHPRAIEAATKYFLVQATASALLLFSSMM-------- 76
Cdd:TIGR01770 108 LLFALLGIFL----LVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLiygftgsl 183

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781   77 ------NAWNTGQWDITLLTYppSCFLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTMMKLPPTTILL------- 143
Cdd:TIGR01770 184 nfedllLFLSNGMLNISLLLL--GIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyil 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  144 ITSHSLNPTLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTL--LTFY--AYVLMTTAIFLTM 219
Cdd:TIGR01770 262 FGFSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYifIYALMSLGAFGVL 341

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  220 ------NTTNTLKLSTLMTSWTKTPTLNTTLMLTLLSLAGLPPLTGFLPKWIIIQELIKQEMIMTATIISMLSLLGLFFY 293
Cdd:TIGR01770 342 sllrsyKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYY 421


                  ...
gi 169787781  294 LRL 296
Cdd:TIGR01770 422 LRV 424
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 2-296 2.49e-20

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 91.62  E-value: 2.49e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781   2 TPLTNLISTLSIMLgttiTITSNHWMTAWAGLEINTLSIIPMIS-KLHHPRAIEAATKYFLVQATASALLLFSSMMNAWN 80
Cdd:MTH00199  99 SPILILIVALGSLL----LVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGL 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  81 TGQWDI----TLLTYPPSCFLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTMMKLPPTTILLITSHSLNPTLLTt 156
Cdd:MTH00199 175 TGETSIqginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC- 253

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 157 mSIMSIALGGWMGLNQTQTRKILAFSSISHLGW----MTIIIIYNPKLTLLTFYAYVLMTTAIF---LTMNTTNTLKLST 229
Cdd:MTH00199 254 -AVLSIIYGAIGALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFsiiLSLKLTKGLIVEV 332

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 169787781 230 LMTSwTKTPTLNTTLMLTLLSLAGLPPLTGFLPKWIIIQELIKQEMIMTATIISMLSLLGLFFYLRL 296
Cdd:MTH00199 333 SGLS-RKNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 14-296 4.89e-18

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 84.43  E-value: 4.89e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  14 MLGTTITITSNHWMTAWAGLEINTLSIIPMISKLHHPRAIEAATKYFLVQATASALLLFSSMMNAWNTGQWDITLL---- 89
Cdd:COG0651  117 LAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLaarl 196

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  90 -TYPPS-----CFLLTTAIAIKLGLTPFHFWFPEVL-QGSSLTTALLLSTMMKLPP-------TTILLITSHSLNPTLLT 155
Cdd:COG0651  197 aELDPGlllaaFALLLVGFGIKAALFPLHFWLPDAYpAAPSPVSALLSGLLTKVGVyailrvlTLLFGADPALFLGTLLL 276

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 156 TMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIII-IYNPKLTLLTFYAYV---LMTTAIFLT----MNTTNTLKL 227
Cdd:COG0651  277 VLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLgLGTPLGLAGALFHLLnhaLAKALLFLAagaiERATGTRDL 356

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 169787781 228 STLMTSWTKTPTLNTTLMLTLLSLAGLPPLTGFLPKWIIIQELIKQEMIMTATIISMLSLLGLFFYLRL 296
Cdd:COG0651  357 DKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-296 1.25e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 74.90  E-value: 1.25e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781   3 PLTNLISTLSIMLGTTITITSNHWMTAWAGLEINTLSIIPMISKLHHPRAI---------EAATKYFLVQATASALLLFS 73
Cdd:MTH00198 187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  74 SMMNAWNTGQ--------------WDITLLTYPPSCFLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTMMKLppT 139
Cdd:MTH00198 267 CALYFGFTGNegmlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--T 344

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 140 TILLITSHSLNPTLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLTFYAYV---LMTTAIF 216
Cdd:MTH00198 345 VYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAvtyLVSALAS 424

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 217 LTM----------------------NTTNTLKLSTLMTSWTKTPTLNTTLMLTLLSLAGLPPLTGFLPKWIIIQELIKQE 274
Cdd:MTH00198 425 FTVictleefgtrtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIA 504

                        330       340
                 ....*....|....*....|....*....
gi 169787781 275 MIMTATIISMLSLLGL-------FFYLRL 296
Cdd:MTH00198 505 FSSSLSIYYLVALFAIictcisaFYYIRI 533
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-298 1.88e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 64.90  E-value: 1.88e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  33 LEINTLSIIPMISKLHHPRAIEAATKYFLVQATASALLLFSSMMNAWNTGQWDITLLT--YPPSCFLLT------TAIAI 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAgaLAENPTVVTafgfvlLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 105 KLGLTPFHFWFPEVLQG-SSLTTALLLSTMMKLPPTTILLITSHSLNP---------TLLTTMSIMSIALGGWMGLNQTQ 174
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTVFGGdfrfalglgWLLAVLALLSMLVGSLAALGQDD 294

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 175 TRKILAFSSISHLGWMTIIIIYNPKLTLL--TFY--AYVLMTTAIFLT----MNTTNTLKLSTLMTSWTKTPTLNTTLML 246
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLALAagLLHllHHALMKGALFLAagaiEVTYGTRRLSELSGLGRRMPLTAAAFAV 374

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 169787781 247 TLLSLAGLPPLTGFLPKWIIIQELIKQEMIMTATIISMLSLLGLFFYLRLTY 298
Cdd:PRK08375 375 ASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 38-192 2.54e-11

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 64.33  E-value: 2.54e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  38 LSIIPM---ISKLHHPRAIEAATKYFLVQATASALLLFSSMMNAWNTGQW-----DITLLTYPPS-------CFLLttAI 102
Cdd:COG1008  142 LMLIPMyflIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTaqlllflAFFI--AF 219

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 103 AIKLGLTPFHFWFPEVL-QGSSLTTALLLSTMMK----------LPpttILLITSHSLNPTLLTtMSIMSIALGGWMGLN 171
Cdd:COG1008  220 AVKVPMFPFHTWLPDAHvEAPTAGSVLLAGVLLKmggygllrfaLP---LFPEASAYFAPLLAA-LGVIGIIYGALVALA 295

                        170       180
                 ....*....|....*....|.
gi 169787781 172 QTQTRKILAFSSISHLGWMTI 192
Cdd:COG1008  296 QTDLKRLIAYSSVSHMGFVLL 316
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-263 6.46e-10

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 60.02  E-value: 6.46e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  51 RAIEAATKYFLVQATASALLLFS-SMMNAWNTGQWDI---------TLLTYPPSCFL----LTTAIAIKLGLTPFHFWFP 116
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVYGfSWLYGLSGGEIELqeivnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTP 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 117 EVLQGSSLTTALLLSTMMKLP----PTTILLITSHSLNP---TLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGW 189
Cdd:CHL00049 239 DVYEGSPTPVVAFLSVTSKVAasalATRIFDIPFYFSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 190 MTIIII-------YNPKLTLLTFYAYVLMTT--AIFLTMNTTNTLKLSTLMTSWTKTPTLNTTLMLTLLSLAGLPPLTGF 260
Cdd:CHL00049 319 VIIGIIvgdsndgYASMITYMLFYIFMNLGTfaCIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGF 398


                 ...
gi 169787781 261 LPK 263
Cdd:CHL00049 399 FGK 401
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 1.95e-09

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 58.52  E-value: 1.95e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  50 PRAIEAATKYFLVQATASALLLF-SSMMNAWNTGQ-----------WDITLLTYPPSCFLLTTaIAIKLGLTPFHFWFPE 117
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGStqlsaialaliTSPSLGLALALVFVIAG-IAFKISAVPFHQWTPD 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 118 VLQGSSLTTALLLSTMMKLPPTTI---LLITSHSLNPT----LLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWM 190
Cdd:PRK02504 236 VYEGSPTPVVAFLSVGSKAAGFALairLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFV 315

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 191 TIIIIYNPKltllTFYAYVLMTTAIFLTMN------------TTNTLKLSTLMTSWTKTPTLNTTLMLTLLSLAGLPPLT 258
Cdd:PRK02504 316 MIGLVAGTE----AGYASMVFYLLAYLFMNlgafacvilfslRTGTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLA 391


                 ....*
gi 169787781 259 GFLPK 263
Cdd:PRK02504 392 GFFGK 396
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 23-298 2.13e-09

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 58.85  E-value: 2.13e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  23 SNHWMTAWAGLEINTLS---IIPMISKlhhpRAIEAATKYFLVQATASALLLFSSMMNAWNTGQWDIT----LLTYPPS- 94
Cdd:PRK08668 117 ANDLLTLYIFWEIMTFSsfmMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFAdisqGLINDTSt 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  95 ------CFLLTTAIAIKLGLTPFHFWFPE-----------VLQG--SSLTTALLLSTMMKLPPTTILL----ITSHSLNP 151
Cdd:PRK08668 193 gfalivFLFLLAFGVAKAGIFPLHVWAPDayseapqsfsaVLSGqlSKLGAYGFLLVLYVLPGTKLFSefgtYRGVPLFN 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 152 TLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIiiiynpKLTLLTFYAY----------VLMTTAIFLTMNT 221
Cdd:PRK08668 273 YILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILV------GLGLGTSLGFagglfhvfnhALFKGLFFLIFAA 346

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 222 ----TNTLKLSTLMTSWTKTPTLNTTLMLTLLSLAGLPPLTGFLPKWIIIQELIKQEMIMTATIISMLSLLGLFFYLRLT 297
Cdd:PRK08668 347 viyrTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPL 426


                 .
gi 169787781 298 Y 298
Cdd:PRK08668 427 A 427
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 38-194 4.81e-08

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 54.44  E-value: 4.81e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  38 LSIIPM---ISKLHHPRAIEAATKYFLVQATASALLLFSSM----MNAWNTGQWDI-TLLTYPPS---------CFLLtt 100
Cdd:PRK05846 142 AMLIPMyflIGVWGGKNRIYAATKFFLYTLLGSLLMLVAIIylvvVYYNATGTFDIaDLLNLPLPpgvqywlflAFFI-- 219

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 101 AIAIKLGLTPFHFWFPEVLQ-----GSSLTTALLLST----MMK--LPpttILLITSHSLNPtLLTTMSIMSIALGGWMG 169
Cdd:PRK05846 220 AFAVKMPMFPLHTWLPDAHVqaptaGSVLLAGILLKMgaygLLRfsLP---LFPDASHEFAP-IIITLGVIAIIYGALVA 295

                        170       180
                 ....*....|....*....|....*
gi 169787781 170 LNQTQTRKILAFSSISHLGWMTIII 194
Cdd:PRK05846 296 LAQTDIKKLIAYSSISHMGFVTLGI 320
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-194 1.30e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 53.02  E-value: 1.30e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781   50 PRAIEAATKYFLVQATASALLLFSSMMNAWNTGQW----DITLLTYPPSC-----FLLTTAIAIKLGLTPFHFWFPEV-L 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  120 QGSSLTTALLLSTMMKLPPTTILLI-------TSHSLNPtLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTI 192
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFnlplfpdASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310


                  ..
gi 169787781  193 II 194
Cdd:TIGR01972 311 GI 312
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-194 1.82e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 52.45  E-value: 1.82e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  13 IMLGTTITITSNHWMTAWAGLEINTLSIIPMISKLHHPRAIEAATKYFLVQATA------SALLLFSSMMNAWNTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  87 TLLT-----YPPSCFLLT-----TAIAIKLGLTPFHFWFPEV-LQGSSLTTALLLSTMMKLPPTTILLITS-------HS 148
Cdd:PRK08676 191 TELAahaslLSPSVLGASflfifIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 169787781 149 LNPTLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIII 194
Cdd:PRK08676 271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGI 316
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 81-263 7.85e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 50.69  E-value: 7.85e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  81 TGQWDIT-LLTYPPSCFLLTTAIAI-------KLGLTPFHFWFPEVLQGSSLTTALLLST-MMKlppTTILLI------- 144
Cdd:PRK12644 184 AGTYRLSeLLADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAaMVK---AGIYLVarlapgf 260

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 145 -TSHSLNPTLLTtMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPK------LTLLTfyAYVLMTTAIFL 217
Cdd:PRK12644 261 aDVPVWRPTVLV-LGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAMLL--AHALFKAALFL 337

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 169787781 218 TM----NTTNTLKLSTLMTSWTKTPTLNTTLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644 338 VVgiidHSTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 1.00e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 50.10  E-value: 1.00e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  33 LEINTLSIIPMIS-KLHHPRAIEAATKYFLVQATASALLLFS----------------SMMNAWNTGQWDITLLTyppsc 95
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygtlnmaylAVKMSENPTVVAKIALA----- 224

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  96 fLLTTAIAIKLGLTPFHFWFPEVLQG--SSLTTALLLSTMMKLPPTTILLITSHSLNPTLLTTMSIMSI------ALGGW 167
Cdd:PRK08376 225 -LFIAGLAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALARVLFSIYGPAINLATVGWVIIIlgcltmFVGVA 303

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 168 MGLNQTQTRKILAFSSISHLGWMTI---IIIYNPKLTLLTFYAYVLMTTAIFLTMN--------------------TTNT 224
Cdd:PRK08376 304 MAVVQKDVKRLLAYHSVSQIGYMLLglgVGLAALGDPAMASYGEIALAGGIYHIVNhalykallfltagaviyetgTRNL 383

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 169787781 225 LKLSTLMTSWTKTPTLNTTLMLTLlslAGLPPLTGFLPKWII 266
Cdd:PRK08376 384 NELGGLARTMPKTTIAFLIGAAAI---VGLPPFNGFASKWLI 422
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 48-271 3.24e-06

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 48.61  E-value: 3.24e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  48 HHPRAIEAATKYFLVQATASALLLFSSMMNAWNTGQWDIT-LLTYPPSCF--LLTTAIAI--------KLGLTPFHFWFP 116
Cdd:COG1009  156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSeLLAAAPTILssPLLTLILLllllgafgKSAQFPLHFWLP 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 117 EVLQGSSLTTALLLS-TMMKlppTTI-LLITSH---SLNPTLLTTMSIMSIA---LGGWMGLNQTQTRKILAFSSISHLG 188
Cdd:COG1009  236 DAMEGPTPVSALLHAaTMVK---AGVyLLARLSplfALSPVWLTVVAIIGAItalFAALIALAQTDIKRVLAYSTVSQLG 312

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 189 WMTIiiiynpkltLLTFYAYV-----LMTTAIF------------LTMNTTNTLKLSTLmtsWTKTPTLNTTLMLTLLSL 251
Cdd:COG1009  313 YMFL---------ALGVGAYVaalfhLLTHAFFkallflgagsviHATGTRDIRKMGGL---RKKMPITAITFLIGALSL 380

                        250       260
                 ....*....|....*....|
gi 169787781 252 AGLPPLTGFLPKWIIIQELI 271
Cdd:COG1009  381 AGIPPFAGFFSKEAILEAAL 400
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 20-192 4.17e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 48.39  E-value: 4.17e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  20 TITSNHWMTAWAGLEINTLSIIPMISKLHHPRAIEAATKYFLVQATASALLLFSSM---MNAWN-TGQWDITLL------ 89
Cdd:PRK06458 124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTIlvyANAATvMGDGEMAILwtellk 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  90 ---TYPPSCFLLTTAIAI-----KLGLTPFHFWFPE-----------VLQGSSLTTALLLSTMMKLppttILLITSHSLN 150
Cdd:PRK06458 204 hasLLDPTLMKLAFVFLLigfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALYAVLRYYI----LIDAAIGSDF 279

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 169787781 151 P-TLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTI 192
Cdd:PRK06458 280 PgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK12650 PRK12650
DUF4040 family protein;
98-263 5.01e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 45.03  E-value: 5.01e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  98 LTTAIAIKLGLT--------PFHFWFPEVLQGSSLTTALLLSTMMKLPPTTILLITS--HSLNPT---LLTTMSIMSIAL 164
Cdd:PRK12650 206 LTTVVAVLIAVAaftksaqfPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSpvFHDVAVwnwLLIIVGMITALM 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 165 GGWMGLNQTQTRKILAFSSISHLGWM-TIIIIYNP-KLT--LLTFYAYVLMTTAIFLTM----NTTNTLKLSTLMTSWTK 236
Cdd:PRK12650 286 GAVFAVQKTDLKKLTAYSTVSQLGWIvATIGVGTPfALTaaVVHTLAHALFKSSLFMLIgvvdHQAGTRDIRRLGSLWRR 365

                        170       180
                 ....*....|....*....|....*..
gi 169787781 237 TPTLNTTLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12650 366 MPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 91-263 1.04e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 44.14  E-value: 1.04e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  91 YPPSCFLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLS-TMMKLpptTILLITShsLNP---------TLLTTMSIM 160
Cdd:PRK12647 194 YLAILLLVLGGAFTKSAQFPFHFWLPNAMEAPTPVSAYLHSaTMVKA---GIYLLAR--LNPvlggtplwqTILPLFGGL 268

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLTFYAYV----LMTTAIFLTMNT----TNTLKLSTLMT 232
Cdd:PRK12647 269 TMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLvahsLYKGALFMVAGIidheTGTRDITKLGG 348

                        170       180       190
                 ....*....|....*....|....*....|.
gi 169787781 233 SWTKTPTLNTTLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12647 349 LRRAMPITAAAALLAALSMAGLPPLFGFLAK 379
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 2.13e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 43.28  E-value: 2.13e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  48 HHPRAIEAATKYFLVQATASALLLFSSMMNAWNTGQWDITLLTYPPSC--------FLLTTAIAIKLGLT------PFHF 113
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghpLFLITLILIFIGAAaksaqgPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 114 WFPEVLQGSSLTTALLLSTMMKLPPTTILLITSHSLNPT-----LLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLG 188
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 189 WMTIIIIYNPK--------------LTLLTFYAYVLMTTAIFLTMNTTNTL-KLSTLMTSWTKTPTLNTTLMLTLlslAG 253
Cdd:PRK12649 316 YLMTMYGYTTYhepglgvaaatfhlLNHATFKACLFLVAGIVAHEAATRDIrKLGGLRKEMPITFIVASIAALAM---AG 392

                        250
                 ....*....|
gi 169787781 254 LPPLTGFLPK 263
Cdd:PRK12649 393 IPPLNGFLSK 402
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-194 2.89e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 42.71  E-value: 2.89e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  55 AATKYFLVQATASALLLFSSMMNAWNTGQ--WDITLLT---YPPSCFLLT-----TAIAIKLGLTPFHFWFPEVL-QGSS 123
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGaksYPLALELLLyagflIAFGVKLPIFPLHTWLPDAHgEASA 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 169787781 124 LTTALLLSTMMKLPPTTI------LLITSHSLNPTLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIII 194
Cdd:PRK12561 218 PVSMILAGVLLKMGGYALirfnvqMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGI 294
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 152-272 1.56e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 40.10  E-value: 1.56e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 152 TLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLTFYAYV----LMTTAIFLTMNTT----N 223
Cdd:PRK12662 280 NVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsIVKSALFMVSGSIsyhfG 359

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 169787781 224 TLKLSTLMTSWTKTPTLNTTLMLTLLSLAGLPPLTGFLPKWIIIQELIK 272
Cdd:PRK12662 360 TTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIK 408
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
18-129 1.62e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 40.07  E-value: 1.62e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  18 TITITSNHW---MTAWAGLEIntlsiipmisKLHH--------PRAIEAATKYFLVQATASALLLFSSMMNAWNTGQWDI 86
Cdd:PRK08168 114 HLLVLSDHLlvlIAAWAAISL----------ALHRllcfypdrPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSL 183

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 169787781  87 T-----LLTYPPS------CFLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALL 129
Cdd:PRK08168 184 SalwahLAAQGASpslqaaALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALL 237
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-188 1.87e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 40.10  E-value: 1.87e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  55 AATKYFLVQATASALLLFSSMMNAWNTGQWDITLLTYPP-----SCFLLTTAIAIKLGLTPFHFWFPEVLQGS-SLTTAL 128
Cdd:PRK08667 163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAgilslVFLLLFLGFGIKAGIIPFHKWLPYAHPASpSNVSAL 242

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 169787781 129 LLSTMMKLPPTTILLITSHSLNP-----TLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLG 188
Cdd:PRK08667 243 MSGVMLKVAVYGLVRFLMDVLSPelwwgVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIG 307
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-277 2.35e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 39.55  E-value: 2.35e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  33 LEINTLSIIPMISKLHHPRAIEAATKYFLVQATASALLLFSSMMNAWNTGQWDIT-LLTYPPSCF-LLTTAIAIKLGLTP 110
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSgLATADPEAFaLIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 111 FHFWFPEVLQGSSLTTALLLSTMMKLPPTTILLITSHSLNPT--LLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLG 188
Cdd:PRK07234 203 SGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLdlIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLG 282

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 189 WmtiiIIYNPKLTLLTFYAYVLMTTAIFLTMNT----TNTLKLSTLMTSWTKtptlnTTLMLTLLSLAGLPPLTGFLPKW 264
Cdd:PRK07234 283 F----ILAAPLVGGLYALAHGLVKSTLFLCAGAlpsrNFTELISQMLGIGKW-----IPLTMASFSIAGFPLLAGFVSKV 353

                        250
                 ....*....|...
gi 169787781 265 IIIQELIKQEMIM 277
Cdd:PRK07234 354 LTLKNLLPWQAIA 366
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-195 2.37e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 39.52  E-value: 2.37e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 101 AIAIKLGLTPFHFWFPEV-LQGSSLTTALLLSTMMKLP-------PTTILLITSHSLNPTLLtTMSIMSIALGGWMGLNQ 172
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAhVEAPVAGSVLLAGILLKLGgyglvrlSWPILPLGAQNLAPAVI-AMGIVGIVYGSFATCRQ 317

                         90       100
                 ....*....|....*....|...
gi 169787781 173 TQTRKILAFSSISHLGWMTIIII 195
Cdd:MTH00226 318 IDVKRLVAYSSVAHMGLVSITLV 340
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-190 2.85e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 39.30  E-value: 2.85e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  55 AATKYFLVQATASALLLFSSMMNAWNTG----QWDITLLTYPP--SCFLLTTAI----AIKLGLTPFHFWFPEV-LQGSS 123
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGassfDYEPLRSHTLPlsTQLLLLAPIlvgfGIKIPLVPFHTWLPDAhVEAST 237

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 169787781 124 LTTALLLSTMMKLPpTTILLITSHSLNPTL-------LTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWM 190
Cdd:PRK06473 238 PVSVLLAGVLLKLG-TYGLLRFGVGLFPEAwvylapwLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
97-293 9.03e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 37.62  E-value: 9.03e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781  97 LLTTAIAIKLGLTPFhFWFPEVLQGSSLTTALLLSTMMK-------LPPTTILLITSHSLNPTLLTTMSIMSIALGGWMG 169
Cdd:PRK12663 212 LFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVIGALGA 290

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787781 170 LNQTQTRKILAFSSISHLGWMTI-IIIYNPK-LTLLTFYAY--VLMTTAIFLT----MNTTNTLKLSTLMTSWTKTPTLN 241
Cdd:PRK12663 291 LAYKDIRRIAGYQVISSIGFILLgLALGTPAgINGAIFYLVhdMVVKTALFLIagslVRLTGYRSLQYLGGLYRKEPLFG 370

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 169787781 242 TTLMLTLLSLAGLPPLTGFLPKWIIIQELI-KQEMIMTAT-----IISMLSLLGLFFY 293
Cdd:PRK12663 371 ALFLILIFAIGGLPPFSGFWGKVLLVQGALdNGAYILLALmlitsLITMYSLFRIFFL 428
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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