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Conserved domains on  [gi|170516356|gb|ACB15149|]
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cytochrome b, partial (mitochondrion) [Euparatettix jiuwanshanensis]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-216 2.29e-138

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 391.45  E-value: 2.29e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356   1 LSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMVIIHLMFLHQTGSNNPLGMNKNSEKIPFHPFYSIKDS 80
Cdd:MTH00156 140 LSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDL 219

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356  81 ITMIIMMMTLTLISLMYPYIMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITMIMPFYNK 160
Cdd:MTH00156 220 VGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNK 299

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 170516356 161 SKFQGNQFYPINQIMFWSMTATVVLLTWVGKQPVEEPYIMVGQTLTMMYFSYFMMN 216
Cdd:MTH00156 300 SKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-216 2.29e-138

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 391.45  E-value: 2.29e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356   1 LSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMVIIHLMFLHQTGSNNPLGMNKNSEKIPFHPFYSIKDS 80
Cdd:MTH00156 140 LSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDL 219

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356  81 ITMIIMMMTLTLISLMYPYIMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITMIMPFYNK 160
Cdd:MTH00156 220 VGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNK 299

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 170516356 161 SKFQGNQFYPINQIMFWSMTATVVLLTWVGKQPVEEPYIMVGQTLTMMYFSYFMMN 216
Cdd:MTH00156 300 SKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-213 1.35e-58

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 189.62  E-value: 1.35e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356   1 LSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLH-FILPFIIAAMVIIHLMFLHQTGSNNPLG----MNKNSEKIPFHPFY 75
Cdd:COG1290  161 FGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYY 240

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356  76 SIKDSITMIIMMMTLTLISLMYPyiMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIP--NKLGGVIALVMSIAITM 153
Cdd:COG1290  241 TVKDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLF 318

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356 154 IMPFYNKSKFQGNQFYPINQIMFWSMTATVVLLTWVGKQPveEPYIMVGQTLTMMYFSYF 213
Cdd:COG1290  319 LLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFF 376
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 58-203 3.12e-48

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 155.50  E-value: 3.12e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356  58 NPLGMNKNSEKIPFHPFYSIKDSITMIIMMMTLTLISLMYPYIMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPN 137
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 170516356 138 KLGGVIALVMSIAITMIMPFYNKSKFQgNQFYPINQIMFWSMTATVVLLTWVGKQPVEEPYIMVGQ 203
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKR-SQFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQ 145
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
109-209 4.53e-43

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 140.69  E-value: 4.53e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356  109 PANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITMIMPFYNKSKFQGNQFYPINQIMFWSMTATVVLLTW 188
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 170516356  189 VGKQPVEEPYIMVGQTLTMMY 209
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 109-190 3.16e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 56.73  E-value: 3.16e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356  109 PANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITMIMPFY-NKSKFQGNQFYPINQIMFwsMTATVVLLt 187
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPFRRPVATTVF--LFGTVVAL- 141


                  ...
gi 170516356  188 WVG 190
Cdd:TIGR01156 142 WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-216 2.29e-138

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 391.45  E-value: 2.29e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356   1 LSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMVIIHLMFLHQTGSNNPLGMNKNSEKIPFHPFYSIKDS 80
Cdd:MTH00156 140 LSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDL 219

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356  81 ITMIIMMMTLTLISLMYPYIMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITMIMPFYNK 160
Cdd:MTH00156 220 VGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNK 299

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 170516356 161 SKFQGNQFYPINQIMFWSMTATVVLLTWVGKQPVEEPYIMVGQTLTMMYFSYFMMN 216
Cdd:MTH00156 300 SKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00145
cytochrome b; Provisional
 1-225 3.59e-121

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 348.82  E-value: 3.59e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356   1 LSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMVIIHLMFLHQTGSNNPLGMNKNSEKIPFHPFYSIKDS 80
Cdd:MTH00145 151 LSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDL 230

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356  81 ITMIIMMMTLTLISLMYPYIMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITMIMPFYNK 160
Cdd:MTH00145 231 VGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHV 310

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 170516356 161 SKFQGNQFYPINQIMFWSMTATVVLLTWVGKQPVEEPYIMVGQTLTMMYFSYFMMNTWMMKAWDK 225
Cdd:MTH00145 311 GKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDN 375
CYTB MTH00016
cytochrome b; Validated
 1-225 2.30e-117

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 339.35  E-value: 2.30e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356   1 LSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMVIIHLMFLHQTGSNNPLGMNKNSEKIPFHPFYSIKDS 80
Cdd:MTH00016 151 LSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDI 230

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356  81 ITMIIMMMTLTLISLMYPYIMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITMIMPFYNK 160
Cdd:MTH00016 231 VGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFK 310

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 170516356 161 SKFQGNQFYPINQIMFWSMTATVVLLTWVGKQPVEEPYIMVGQTLTMMYFSYFMMNTWMMKAWDK 225
Cdd:MTH00016 311 QKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDK 375
CYTB MTH00119
cytochrome b; Provisional
 1-215 1.01e-115

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 334.95  E-value: 1.01e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356   1 LSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMVIIHLMFLHQTGSNNPLGMNKNSEKIPFHPFYSIKDS 80
Cdd:MTH00119 151 LSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDL 230

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356  81 ITMIIMMMTLTLISLMYPYIMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITMIMPFYNK 160
Cdd:MTH00119 231 LGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHT 310

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 170516356 161 SKFQGNQFYPINQIMFWSMTATVVLLTWVGKQPVEEPYIMVGQTLTMMYFSYFMM 215
Cdd:MTH00119 311 SKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLI 365
CYTB MTH00191
cytochrome b; Provisional
 1-215 3.51e-115

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 333.04  E-value: 3.51e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356   1 LSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMVIIHLMFLHQTGSNNPLGMNKNSEKIPFHPFYSIKDS 80
Cdd:MTH00191 147 LSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDI 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356  81 ITMIIMMMTLTLISLMYPYIMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITMIMPFYNK 160
Cdd:MTH00191 227 LGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHT 306

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 170516356 161 SKFQGNQFYPINQIMFWSMTATVVLLTWVGKQPVEEPYIMVGQTLTMMYFSYFMM 215
Cdd:MTH00191 307 SKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
CYTB MTH00131
cytochrome b; Provisional
 1-214 6.83e-114

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 330.46  E-value: 6.83e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356   1 LSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMVIIHLMFLHQTGSNNPLGMNKNSEKIPFHPFYSIKDS 80
Cdd:MTH00131 150 LSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDL 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356  81 ITMIIMMMTLTLISLMYPYIMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITMIMPFYNK 160
Cdd:MTH00131 230 LGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHT 309

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 170516356 161 SKFQGNQFYPINQIMFWSMTATVVLLTWVGKQPVEEPYIMVGQTLTMMYFSYFM 214
Cdd:MTH00131 310 SKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFL 363
CYTB MTH00074
cytochrome b; Provisional
 1-215 5.15e-113

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 328.18  E-value: 5.15e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356   1 LSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMVIIHLMFLHQTGSNNPLGMNKNSEKIPFHPFYSIKDS 80
Cdd:MTH00074 151 LSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDL 230

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356  81 ITMIIMMMTLTLISLMYPYIMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITMIMPFYNK 160
Cdd:MTH00074 231 LGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHT 310

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 170516356 161 SKFQGNQFYPINQIMFWSMTATVVLLTWVGKQPVEEPYIMVGQTLTMMYFSYFMM 215
Cdd:MTH00074 311 SKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFII 365
CYTB MTH00100
cytochrome b; Provisional
 1-211 1.08e-112

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 327.37  E-value: 1.08e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356   1 LSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMVIIHLMFLHQTGSNNPLGMNKNSEKIPFHPFYSIKDS 80
Cdd:MTH00100 150 LSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDI 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356  81 ITMIIMMMTLTLISLMYPYIMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITMIMPFYNK 160
Cdd:MTH00100 230 LGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHT 309

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 170516356 161 SKFQGNQFYPINQIMFWSMTATVVLLTWVGKQPVEEPYIMVGQTLTMMYFS 211
Cdd:MTH00100 310 SKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFL 360
CYTB MTH00034
cytochrome b; Validated
 1-214 2.02e-108

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 316.65  E-value: 2.02e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356   1 LSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMVIIHLMFLHQTGSNNPLGMNKNSEKIPFHPFYSIKDS 80
Cdd:MTH00034 150 VSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDL 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356  81 ITMIIMMMTLTLISLMYPYIMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITMIMPFYNK 160
Cdd:MTH00034 230 VGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHT 309

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 170516356 161 SKFQGNQFYPINQIMFWSMTATVVLLTWVGKQPVEEPYIMVGQTLTMMYFSYFM 214
Cdd:MTH00034 310 SNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFL 363
CYTB MTH00053
cytochrome b; Provisional
 1-215 1.23e-94

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 281.59  E-value: 1.23e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356   1 LSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMVIIHLMFLHQTGSNNPLGMNKNSEKIPFHPFYSIKDS 80
Cdd:MTH00053 151 LSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDL 230

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356  81 ITMIIMMMTLTLISLMYPYIMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITMIMPFYNK 160
Cdd:MTH00053 231 YGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHK 310

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 170516356 161 SKFQGNQFYPINQIMFWSMTATVVLLTWVGKQPVEEPYIMVGQTLTMMYFSYFMM 215
Cdd:MTH00053 311 SRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLI 365
CYTB MTH00224
cytochrome b; Provisional
 1-225 4.14e-94

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 280.27  E-value: 4.14e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356   1 LSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMVIIHLMFLHQTGSNNPLGMNKNSEKIPFHPFYSIKDS 80
Cdd:MTH00224 151 FSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDA 230

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356  81 ITMIIMMMTLTLISLMYPYIMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITMIMPFYNK 160
Cdd:MTH00224 231 LGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSV 310

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 170516356 161 SKFQGNQFYPINQIMFWSMTATVVLLTWVGKQPVEEPYIMVGQTLTMMYFSYFMMNTWMMKAWDK 225
Cdd:MTH00224 311 MNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDD 375
CYTB MTH00022
cytochrome b; Validated
 1-215 4.82e-94

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 280.05  E-value: 4.82e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356   1 LSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMVIIHLMFLHQTGSNNPLGMNKNSEKIPFHPFYSIKDS 80
Cdd:MTH00022 149 LSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDW 228

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356  81 ITMIIMMMTLTLISLMYPYIMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITMIMPFYNK 160
Cdd:MTH00022 229 YGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHT 308

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 170516356 161 SKFQGNQFYPINQIMFWSMTATVVLLTWVGKQPVEEPYIMVGQTLTMMYFSYFMM 215
Cdd:MTH00022 309 SWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLV 363
CYTB MTH00033
cytochrome b; Provisional
 1-215 6.60e-67

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 210.95  E-value: 6.60e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356   1 LSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMVIIHLMFLHQTGSNNPLGMNKNSEKIPFHPFYSIKDS 80
Cdd:MTH00033 147 VSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDI 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356  81 ITMIIMMMTLTLISL--MYPYIMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITMIMPFY 158
Cdd:MTH00033 227 LGFLILFGVFVIIGIepRIETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPIL 306

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 170516356 159 NKSKFQGNQFYPINQIMFWSMTATVVLLTWVGKQPV-EEPYIMVGQTLTMMYFSYFMM 215
Cdd:MTH00033 307 DRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLV 364
CYTB MTH00086
cytochrome b; Provisional
 1-215 1.22e-65

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 206.71  E-value: 1.22e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356   1 LSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMVIIHLMFLHQTGSNNPLGMNKNSEKIPFHPFYSIKDS 80
Cdd:MTH00086 139 LSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDA 218

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356  81 ITMIIMMMtLTLISLMYPYIMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITMIMPFYNk 160
Cdd:MTH00086 219 YNIIFWLV-FIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVN- 296

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 170516356 161 skFQGNQFYPINQIMFWSMTATVVLLTWVGKQPVEEPYIMVGQTLTMMYFSYFMM 215
Cdd:MTH00086 297 --NYTSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILL 349
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-213 1.35e-58

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 189.62  E-value: 1.35e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356   1 LSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLH-FILPFIIAAMVIIHLMFLHQTGSNNPLG----MNKNSEKIPFHPFY 75
Cdd:COG1290  161 FGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYY 240

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356  76 SIKDSITMIIMMMTLTLISLMYPyiMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIP--NKLGGVIALVMSIAITM 153
Cdd:COG1290  241 TVKDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLF 318

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356 154 IMPFYNKSKFQGNQFYPINQIMFWSMTATVVLLTWVGKQPveEPYIMVGQTLTMMYFSYF 213
Cdd:COG1290  319 LLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFF 376
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 58-203 3.12e-48

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 155.50  E-value: 3.12e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356  58 NPLGMNKNSEKIPFHPFYSIKDSITMIIMMMTLTLISLMYPYIMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPN 137
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 170516356 138 KLGGVIALVMSIAITMIMPFYNKSKFQgNQFYPINQIMFWSMTATVVLLTWVGKQPVEEPYIMVGQ 203
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKR-SQFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQ 145
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
109-209 4.53e-43

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 140.69  E-value: 4.53e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356  109 PANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITMIMPFYNKSKFQGNQFYPINQIMFWSMTATVVLLTW 188
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 170516356  189 VGKQPVEEPYIMVGQTLTMMY 209
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
CYTB MTH00046
cytochrome b; Validated
 1-208 1.71e-41

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 144.36  E-value: 1.71e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356   1 LSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMVIIHLMFLHQTGSNNPLGMNKN-SEKIPFHPFYSIKD 79
Cdd:MTH00046 141 VDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKD 220

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356  80 SITMIIMMMTLTLISLMYPYIMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIaLVMSIAITMIMPFYN 159
Cdd:MTH00046 221 LFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVPTFN 299

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 170516356 160 KSKFqgnqFYPINQIMFWSMTATVVLLTWVGKQPVEEPYIMVGQTLTMM 208
Cdd:MTH00046 300 GSSV----YSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSVL 344
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-57 1.70e-21

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 88.19  E-value: 1.70e-21
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 170516356   1 LSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMVIIHLMFLHQTGSN 57
Cdd:cd00284  144 FSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
1-104 2.22e-19

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 81.52  E-value: 2.22e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356    1 LSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHF-ILPFIIAAMVIIHLMFLHQTGSNNPLGMNKNSEKIPFHPFYSIKD 79
Cdd:pfam13631  65 LSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKM 144

                          90       100
                  ....*....|....*....|....*
gi 170516356   80 SITMIIMMMTLTLISLMYPYIMGDP 104
Cdd:pfam13631 145 LLFFLITVALLIGLAQINPIWLGGP 169
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-55 1.10e-17

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 77.81  E-value: 1.10e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 170516356    1 LSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMVIIHLMFLHQTG 55
Cdd:pfam00033 135 LSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
petD CHL00058
cytochrome b6/f complex subunit IV
 93-186 1.32e-11

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 60.40  E-value: 1.32e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356  93 ISLMYPYIMGDPdnfipANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITMIMPFY-NKSKFQGNQFYPI 171
Cdd:CHL00058  54 LAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNPFRRPV 128

                         90
                 ....*....|....*
gi 170516356 172 NQIMFWSMTATVVLL 186
Cdd:CHL00058 129 ATTVFLIGTAVALWL 143
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 84-196 9.03e-11

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 58.27  E-value: 9.03e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356  84 IIMMMTLTLI---SLMYPYIMGDPdnfipANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITMIMPFY-N 159
Cdd:COG5679   43 VVILGTIALCiglAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIeN 117

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 170516356 160 KSKFQGNQFYPINQIMFWSMTATVVLLTWVGKQPVEE 196
Cdd:COG5679  118 VNKFQNPFRRPVATAVFLFGTLVTLWLGIGAALPIDK 154
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 109-190 3.16e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 56.73  E-value: 3.16e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356  109 PANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITMIMPFY-NKSKFQGNQFYPINQIMFwsMTATVVLLt 187
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPFRRPVATTVF--LFGTVVAL- 141


                  ...
gi 170516356  188 WVG 190
Cdd:TIGR01156 142 WLG 144
petB CHL00070
cytochrome b6
 3-60 4.75e-07

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 48.56  E-value: 4.75e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 170516356   3 AIPYMGNQIVQWIWGGFAVDNPTLSRFFSLH-FILPFIIAAMVIIHLMFLHQTGSNNPL 60
Cdd:CHL00070 157 AIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
PRK03735 PRK03735
cytochrome b6; Provisional
 2-60 1.77e-06

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 47.01  E-value: 1.77e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516356   2 SAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLH-FILPFIIAAMVIIHLMFLHQTGSNNPL 60
Cdd:PRK03735 164 EAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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