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Conserved domains on  [gi|170516364|gb|ACB15152|]
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cytochrome b, partial (mitochondrion) [Tetrix serrifemoralis]

Protein Classification

cytochrome b( domain architecture ID 999997)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
CYTB super family cl33360
cytochrome b; Provisional
1-216 5.55e-134

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00156:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 380.67  E-value: 5.55e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364   1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTGSNNPLGMNSNSEKIPFHPFFSTKDS 80
Cdd:MTH00156 140 LSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDL 219
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364  81 ITMLTMMSLMMMVSLKYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFYNK 160
Cdd:MTH00156 220 VGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNK 299
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 170516364 161 SKFQGIQFYPMNQIMFWMMVMTIILLTWVGKKPVEEPYITTGQILTTMYFSYFMMN 216
Cdd:MTH00156 300 SKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
1-216 5.55e-134

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 380.67  E-value: 5.55e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364   1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTGSNNPLGMNSNSEKIPFHPFFSTKDS 80
Cdd:MTH00156 140 LSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDL 219
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364  81 ITMLTMMSLMMMVSLKYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFYNK 160
Cdd:MTH00156 220 VGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNK 299
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 170516364 161 SKFQGIQFYPMNQIMFWMMVMTIILLTWVGKKPVEEPYITTGQILTTMYFSYFMMN 216
Cdd:MTH00156 300 SKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-213 1.61e-54

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 178.83  E-value: 1.61e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364   1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLH-FILPFIIAAMTMIHLIFLHQTGSNNPLG----MNSNSEKIPFHPFF 75
Cdd:COG1290  161 FGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYY 240
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364  76 STKDSITMLTMMSLMMMVSLKYPyiLGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIP--NKLGGVIALVASIAITL 153
Cdd:COG1290  241 TVKDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLF 318
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 154 IMPFYNKSKFQGIQFYPMNQIMFWMMVMTIILLTWVGKKPveEPYITTGQILTTMYFSYF 213
Cdd:COG1290  319 LLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFF 376
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
58-204 4.43e-45

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 147.41  E-value: 4.43e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364  58 NPLGMNSNSEKIPFHPFFSTKDSITMLTMMSLMMMVSLKYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPN 137
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 170516364 138 KLGGVIALVASIAITLIMPFYNKSKFQGiQFYPMNQIMFWMMVMTIILLTWVGKKPVEEPYITTGQI 204
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
109-209 5.32e-44

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 143.00  E-value: 5.32e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364  109 PANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFYNKSKFQGIQFYPMNQIMFWMMVMTIILLTW 188
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80
                          90       100
                  ....*....|....*....|.
gi 170516364  189 VGKKPVEEPYITTGQILTTMY 209
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
109-176 2.00e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 51.72  E-value: 2.00e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 170516364  109 PANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFY-NKSKFQGIQFYPMNQIMF 176
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPFRRPVATTVF 133
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
1-216 5.55e-134

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 380.67  E-value: 5.55e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364   1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTGSNNPLGMNSNSEKIPFHPFFSTKDS 80
Cdd:MTH00156 140 LSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDL 219
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364  81 ITMLTMMSLMMMVSLKYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFYNK 160
Cdd:MTH00156 220 VGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNK 299
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 170516364 161 SKFQGIQFYPMNQIMFWMMVMTIILLTWVGKKPVEEPYITTGQILTTMYFSYFMMN 216
Cdd:MTH00156 300 SKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00145
cytochrome b; Provisional
1-226 2.63e-116

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 336.49  E-value: 2.63e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364   1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTGSNNPLGMNSNSEKIPFHPFFSTKDS 80
Cdd:MTH00145 151 LSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDL 230
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364  81 ITMLTMMSLMMMVSLKYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFYNK 160
Cdd:MTH00145 231 VGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHV 310
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 170516364 161 SKFQGIQFYPMNQIMFWMMVMTIILLTWVGKKPVEEPYITTGQILTTMYFSYFMMNTWVNKMWDYM 226
Cdd:MTH00145 311 GKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNI 376
CYTB MTH00016
cytochrome b; Validated
1-226 4.74e-114

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 330.87  E-value: 4.74e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364   1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTGSNNPLGMNSNSEKIPFHPFFSTKDS 80
Cdd:MTH00016 151 LSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDI 230
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364  81 ITMLTMMSLMMMVSLKYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFYNK 160
Cdd:MTH00016 231 VGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFK 310
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 170516364 161 SKFQGIQFYPMNQIMFWMMVMTIILLTWVGKKPVEEPYITTGQILTTMYFSYFMMNTWVNKMWDYM 226
Cdd:MTH00016 311 QKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKL 376
CYTB MTH00119
cytochrome b; Provisional
1-215 7.67e-112

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 325.32  E-value: 7.67e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364   1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTGSNNPLGMNSNSEKIPFHPFFSTKDS 80
Cdd:MTH00119 151 LSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDL 230
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364  81 ITMLTMMSLMMMVSLKYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFYNK 160
Cdd:MTH00119 231 LGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHT 310
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 170516364 161 SKFQGIQFYPMNQIMFWMMVMTIILLTWVGKKPVEEPYITTGQILTTMYFSYFMM 215
Cdd:MTH00119 311 SKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLI 365
CYTB MTH00191
cytochrome b; Provisional
1-215 1.57e-109

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 318.78  E-value: 1.57e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364   1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTGSNNPLGMNSNSEKIPFHPFFSTKDS 80
Cdd:MTH00191 147 LSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDI 226
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364  81 ITMLTMMSLMMMVSLKYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFYNK 160
Cdd:MTH00191 227 LGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHT 306
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 170516364 161 SKFQGIQFYPMNQIMFWMMVMTIILLTWVGKKPVEEPYITTGQILTTMYFSYFMM 215
Cdd:MTH00191 307 SKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
CYTB MTH00131
cytochrome b; Provisional
1-214 6.88e-109

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 317.75  E-value: 6.88e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364   1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTGSNNPLGMNSNSEKIPFHPFFSTKDS 80
Cdd:MTH00131 150 LSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDL 229
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364  81 ITMLTMMSLMMMVSLKYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFYNK 160
Cdd:MTH00131 230 LGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHT 309
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 170516364 161 SKFQGIQFYPMNQIMFWMMVMTIILLTWVGKKPVEEPYITTGQILTTMYFSYFM 214
Cdd:MTH00131 310 SKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFL 363
CYTB MTH00074
cytochrome b; Provisional
1-222 1.81e-105

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 308.92  E-value: 1.81e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364   1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTGSNNPLGMNSNSEKIPFHPFFSTKDS 80
Cdd:MTH00074 151 LSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDL 230
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364  81 ITMLTMMSLMMMVSLKYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFYNK 160
Cdd:MTH00074 231 LGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHT 310
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 170516364 161 SKFQGIQFYPMNQIMFWMMVMTIILLTWVGKKPVEEPYITTGQILTTMYFSYF-----MMNTWVNKM 222
Cdd:MTH00074 311 SKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFiiiipLTGWLENKL 377
CYTB MTH00100
cytochrome b; Provisional
1-211 1.28e-104

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 306.95  E-value: 1.28e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364   1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTGSNNPLGMNSNSEKIPFHPFFSTKDS 80
Cdd:MTH00100 150 LSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDI 229
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364  81 ITMLTMMSLMMMVSLKYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFYNK 160
Cdd:MTH00100 230 LGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHT 309
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 170516364 161 SKFQGIQFYPMNQIMFWMMVMTIILLTWVGKKPVEEPYITTGQILTTMYFS 211
Cdd:MTH00100 310 SKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFL 360
CYTB MTH00034
cytochrome b; Validated
1-214 6.07e-101

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 297.39  E-value: 6.07e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364   1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTGSNNPLGMNSNSEKIPFHPFFSTKDS 80
Cdd:MTH00034 150 VSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDL 229
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364  81 ITMLTMMSLMMMVSLKYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFYNK 160
Cdd:MTH00034 230 VGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHT 309
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 170516364 161 SKFQGIQFYPMNQIMFWMMVMTIILLTWVGKKPVEEPYITTGQILTTMYFSYFM 214
Cdd:MTH00034 310 SNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFL 363
CYTB MTH00053
cytochrome b; Provisional
1-215 1.40e-90

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 271.19  E-value: 1.40e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364   1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTGSNNPLGMNSNSEKIPFHPFFSTKDS 80
Cdd:MTH00053 151 LSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDL 230
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364  81 ITMLTMMSLMMMVSLKYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFYNK 160
Cdd:MTH00053 231 YGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHK 310
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 170516364 161 SKFQGIQFYPMNQIMFWMMVMTIILLTWVGKKPVEEPYITTGQILTTMYFSYFMM 215
Cdd:MTH00053 311 SRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLI 365
CYTB MTH00022
cytochrome b; Validated
1-215 3.60e-90

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 270.03  E-value: 3.60e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364   1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTGSNNPLGMNSNSEKIPFHPFFSTKDS 80
Cdd:MTH00022 149 LSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDW 228
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364  81 ITMLTMMSLMMMVSLKYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFYNK 160
Cdd:MTH00022 229 YGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHT 308
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 170516364 161 SKFQGIQFYPMNQIMFWMMVMTIILLTWVGKKPVEEPYITTGQILTTMYFSYFMM 215
Cdd:MTH00022 309 SWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLV 363
CYTB MTH00224
cytochrome b; Provisional
1-224 3.68e-90

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 270.25  E-value: 3.68e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364   1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTGSNNPLGMNSNSEKIPFHPFFSTKDS 80
Cdd:MTH00224 151 FSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDA 230
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364  81 ITMLTMMSLMMMVSLKYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFYNK 160
Cdd:MTH00224 231 LGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSV 310
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 170516364 161 SKFQGIQFYPMNQIMFWMMVMTIILLTWVGKKPVEEPYITTGQILTTMYFSYFMMNTWVNKMWD 224
Cdd:MTH00224 311 MNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWD 374
CYTB MTH00033
cytochrome b; Provisional
1-215 1.80e-64

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 204.40  E-value: 1.80e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364   1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTGSNNPLGMNSNSEKIPFHPFFSTKD- 79
Cdd:MTH00033 147 VSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDi 226
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364  80 -SITMLTMMSLMMMVSLKYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFY 158
Cdd:MTH00033 227 lGFLILFGVFVIIGIEPRIETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPIL 306
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 170516364 159 NKSKFQGIQFYPMNQIMFWMMVMTIILLTWVGKKPV-EEPYITTGQILTTMYFSYFMM 215
Cdd:MTH00033 307 DRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLV 364
CYTB MTH00086
cytochrome b; Provisional
1-221 4.11e-62

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 197.47  E-value: 4.11e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364   1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTGSNNPLGMNSNSEKIPFHPFFSTKDS 80
Cdd:MTH00086 139 LSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDA 218
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364  81 ITMLTMMSLMMMVSLkYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFYNk 160
Cdd:MTH00086 219 YNIIFWLVFIIFSLF-YPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVN- 296
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 170516364 161 skFQGIQFYPMNQIMFWMMVMTIILLTWVGKKPVEEPYITTGQILTTMYFSYFMMNTWVNK 221
Cdd:MTH00086 297 --NYTSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLMLFLFY 355
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-213 1.61e-54

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 178.83  E-value: 1.61e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364   1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLH-FILPFIIAAMTMIHLIFLHQTGSNNPLG----MNSNSEKIPFHPFF 75
Cdd:COG1290  161 FGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYY 240
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364  76 STKDSITMLTMMSLMMMVSLKYPyiLGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIP--NKLGGVIALVASIAITL 153
Cdd:COG1290  241 TVKDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLF 318
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 154 IMPFYNKSKFQGIQFYPMNQIMFWMMVMTIILLTWVGKKPveEPYITTGQILTTMYFSYF 213
Cdd:COG1290  319 LLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFF 376
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
58-204 4.43e-45

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 147.41  E-value: 4.43e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364  58 NPLGMNSNSEKIPFHPFFSTKDSITMLTMMSLMMMVSLKYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPN 137
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 170516364 138 KLGGVIALVASIAITLIMPFYNKSKFQGiQFYPMNQIMFWMMVMTIILLTWVGKKPVEEPYITTGQI 204
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
109-209 5.32e-44

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 143.00  E-value: 5.32e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364  109 PANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFYNKSKFQGIQFYPMNQIMFWMMVMTIILLTW 188
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80
                          90       100
                  ....*....|....*....|.
gi 170516364  189 VGKKPVEEPYITTGQILTTMY 209
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
CYTB MTH00046
cytochrome b; Validated
1-208 3.38e-39

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 138.19  E-value: 3.38e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364   1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTGSNNPL-GMNSNSEKIPFHPFFSTKD 79
Cdd:MTH00046 141 VDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLfSSNGYSDVVYFHSYFTVKD 220
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364  80 SITMLTMMSLMMMVSLKYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIaLVASIAITLIMPFYN 159
Cdd:MTH00046 221 LFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVPTFN 299
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 170516364 160 KSKFQGIqfypMNQIMFWMMVMTIILLTWVGKKPVEEPYITTGQILTTM 208
Cdd:MTH00046 300 GSSVYSV----WRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSVL 344
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
1-57 2.58e-21

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 87.42  E-value: 2.58e-21
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 170516364   1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTGSN 57
Cdd:cd00284  144 FSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
1-81 8.87e-19

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 79.98  E-value: 8.87e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364    1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHF-ILPFIIAAMTMIHLIFLHQTGSNNPLGMNSNSEKIPFHPFFSTKD 79
Cdd:pfam13631  65 LSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKM 144

                  ..
gi 170516364   80 SI 81
Cdd:pfam13631 145 LL 146
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-55 6.75e-18

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 78.19  E-value: 6.75e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 170516364    1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTG 55
Cdd:pfam00033 135 LSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
petD CHL00058
cytochrome b6/f complex subunit IV
98-164 2.12e-10

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 57.32  E-value: 2.12e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 170516364  98 PYILGDPdnfipANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFY-NKSKFQ 164
Cdd:CHL00058  59 PSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQ 121
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
109-164 7.87e-09

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 52.87  E-value: 7.87e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 170516364 109 PANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFY-NKSKFQ 164
Cdd:COG5679   66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIeNVNKFQ 122
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
109-176 2.00e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 51.72  E-value: 2.00e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 170516364  109 PANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFY-NKSKFQGIQFYPMNQIMF 176
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPFRRPVATTVF 133
petB CHL00070
cytochrome b6
3-60 1.56e-07

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 50.10  E-value: 1.56e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 170516364   3 AIPYVGNQIVQWIWGGFAVDNPTLSRFFSLH-FILPFIIAAMTMIHLIFLHQTGSNNPL 60
Cdd:CHL00070 157 AIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
PRK03735 PRK03735
cytochrome b6; Provisional
2-60 2.63e-07

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 49.71  E-value: 2.63e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364   2 SAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLH-FILPFIIAAMTMIHLIFLHQTGSNNPL 60
Cdd:PRK03735 164 EAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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