|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-216 |
5.55e-134 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 380.67 E-value: 5.55e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTGSNNPLGMNSNSEKIPFHPFFSTKDS 80
Cdd:MTH00156 140 LSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDL 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 81 ITMLTMMSLMMMVSLKYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFYNK 160
Cdd:MTH00156 220 VGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNK 299
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 170516364 161 SKFQGIQFYPMNQIMFWMMVMTIILLTWVGKKPVEEPYITTGQILTTMYFSYFMMN 216
Cdd:MTH00156 300 SKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-213 |
1.61e-54 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 178.83 E-value: 1.61e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLH-FILPFIIAAMTMIHLIFLHQTGSNNPLG----MNSNSEKIPFHPFF 75
Cdd:COG1290 161 FGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYY 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 76 STKDSITMLTMMSLMMMVSLKYPyiLGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIP--NKLGGVIALVASIAITL 153
Cdd:COG1290 241 TVKDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLF 318
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 154 IMPFYNKSKFQGIQFYPMNQIMFWMMVMTIILLTWVGKKPveEPYITTGQILTTMYFSYF 213
Cdd:COG1290 319 LLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFF 376
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
58-204 |
4.43e-45 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 147.41 E-value: 4.43e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 58 NPLGMNSNSEKIPFHPFFSTKDSITMLTMMSLMMMVSLKYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPN 137
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 170516364 138 KLGGVIALVASIAITLIMPFYNKSKFQGiQFYPMNQIMFWMMVMTIILLTWVGKKPVEEPYITTGQI 204
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
109-209 |
5.32e-44 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 143.00 E-value: 5.32e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 109 PANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFYNKSKFQGIQFYPMNQIMFWMMVMTIILLTW 188
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80
|
90 100
....*....|....*....|.
gi 170516364 189 VGKKPVEEPYITTGQILTTMY 209
Cdd:pfam00032 81 LGKQPPTGPYTLLGQIATVYY 101
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
109-176 |
2.00e-08 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 51.72 E-value: 2.00e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 170516364 109 PANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFY-NKSKFQGIQFYPMNQIMF 176
Cdd:TIGR01156 65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPFRRPVATTVF 133
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-216 |
5.55e-134 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 380.67 E-value: 5.55e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTGSNNPLGMNSNSEKIPFHPFFSTKDS 80
Cdd:MTH00156 140 LSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDL 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 81 ITMLTMMSLMMMVSLKYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFYNK 160
Cdd:MTH00156 220 VGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNK 299
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 170516364 161 SKFQGIQFYPMNQIMFWMMVMTIILLTWVGKKPVEEPYITTGQILTTMYFSYFMMN 216
Cdd:MTH00156 300 SKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-226 |
2.63e-116 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 336.49 E-value: 2.63e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTGSNNPLGMNSNSEKIPFHPFFSTKDS 80
Cdd:MTH00145 151 LSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDL 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 81 ITMLTMMSLMMMVSLKYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFYNK 160
Cdd:MTH00145 231 VGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHV 310
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 170516364 161 SKFQGIQFYPMNQIMFWMMVMTIILLTWVGKKPVEEPYITTGQILTTMYFSYFMMNTWVNKMWDYM 226
Cdd:MTH00145 311 GKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNI 376
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-226 |
4.74e-114 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 330.87 E-value: 4.74e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTGSNNPLGMNSNSEKIPFHPFFSTKDS 80
Cdd:MTH00016 151 LSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDI 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 81 ITMLTMMSLMMMVSLKYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFYNK 160
Cdd:MTH00016 231 VGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFK 310
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 170516364 161 SKFQGIQFYPMNQIMFWMMVMTIILLTWVGKKPVEEPYITTGQILTTMYFSYFMMNTWVNKMWDYM 226
Cdd:MTH00016 311 QKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKL 376
|
|
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-215 |
7.67e-112 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 325.32 E-value: 7.67e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTGSNNPLGMNSNSEKIPFHPFFSTKDS 80
Cdd:MTH00119 151 LSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDL 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 81 ITMLTMMSLMMMVSLKYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFYNK 160
Cdd:MTH00119 231 LGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHT 310
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 170516364 161 SKFQGIQFYPMNQIMFWMMVMTIILLTWVGKKPVEEPYITTGQILTTMYFSYFMM 215
Cdd:MTH00119 311 SKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLI 365
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-215 |
1.57e-109 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 318.78 E-value: 1.57e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTGSNNPLGMNSNSEKIPFHPFFSTKDS 80
Cdd:MTH00191 147 LSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDI 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 81 ITMLTMMSLMMMVSLKYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFYNK 160
Cdd:MTH00191 227 LGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHT 306
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 170516364 161 SKFQGIQFYPMNQIMFWMMVMTIILLTWVGKKPVEEPYITTGQILTTMYFSYFMM 215
Cdd:MTH00191 307 SKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-214 |
6.88e-109 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 317.75 E-value: 6.88e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTGSNNPLGMNSNSEKIPFHPFFSTKDS 80
Cdd:MTH00131 150 LSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDL 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 81 ITMLTMMSLMMMVSLKYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFYNK 160
Cdd:MTH00131 230 LGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHT 309
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 170516364 161 SKFQGIQFYPMNQIMFWMMVMTIILLTWVGKKPVEEPYITTGQILTTMYFSYFM 214
Cdd:MTH00131 310 SKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFL 363
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-222 |
1.81e-105 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 308.92 E-value: 1.81e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTGSNNPLGMNSNSEKIPFHPFFSTKDS 80
Cdd:MTH00074 151 LSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDL 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 81 ITMLTMMSLMMMVSLKYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFYNK 160
Cdd:MTH00074 231 LGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHT 310
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 170516364 161 SKFQGIQFYPMNQIMFWMMVMTIILLTWVGKKPVEEPYITTGQILTTMYFSYF-----MMNTWVNKM 222
Cdd:MTH00074 311 SKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFiiiipLTGWLENKL 377
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-211 |
1.28e-104 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 306.95 E-value: 1.28e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTGSNNPLGMNSNSEKIPFHPFFSTKDS 80
Cdd:MTH00100 150 LSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDI 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 81 ITMLTMMSLMMMVSLKYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFYNK 160
Cdd:MTH00100 230 LGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHT 309
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 170516364 161 SKFQGIQFYPMNQIMFWMMVMTIILLTWVGKKPVEEPYITTGQILTTMYFS 211
Cdd:MTH00100 310 SKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFL 360
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-214 |
6.07e-101 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 297.39 E-value: 6.07e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTGSNNPLGMNSNSEKIPFHPFFSTKDS 80
Cdd:MTH00034 150 VSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDL 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 81 ITMLTMMSLMMMVSLKYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFYNK 160
Cdd:MTH00034 230 VGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHT 309
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 170516364 161 SKFQGIQFYPMNQIMFWMMVMTIILLTWVGKKPVEEPYITTGQILTTMYFSYFM 214
Cdd:MTH00034 310 SNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFL 363
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-215 |
1.40e-90 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 271.19 E-value: 1.40e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTGSNNPLGMNSNSEKIPFHPFFSTKDS 80
Cdd:MTH00053 151 LSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDL 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 81 ITMLTMMSLMMMVSLKYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFYNK 160
Cdd:MTH00053 231 YGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHK 310
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 170516364 161 SKFQGIQFYPMNQIMFWMMVMTIILLTWVGKKPVEEPYITTGQILTTMYFSYFMM 215
Cdd:MTH00053 311 SRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLI 365
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-215 |
3.60e-90 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 270.03 E-value: 3.60e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTGSNNPLGMNSNSEKIPFHPFFSTKDS 80
Cdd:MTH00022 149 LSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDW 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 81 ITMLTMMSLMMMVSLKYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFYNK 160
Cdd:MTH00022 229 YGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHT 308
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 170516364 161 SKFQGIQFYPMNQIMFWMMVMTIILLTWVGKKPVEEPYITTGQILTTMYFSYFMM 215
Cdd:MTH00022 309 SWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLV 363
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-224 |
3.68e-90 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 270.25 E-value: 3.68e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTGSNNPLGMNSNSEKIPFHPFFSTKDS 80
Cdd:MTH00224 151 FSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDA 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 81 ITMLTMMSLMMMVSLKYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFYNK 160
Cdd:MTH00224 231 LGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSV 310
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 170516364 161 SKFQGIQFYPMNQIMFWMMVMTIILLTWVGKKPVEEPYITTGQILTTMYFSYFMMNTWVNKMWD 224
Cdd:MTH00224 311 MNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWD 374
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-215 |
1.80e-64 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 204.40 E-value: 1.80e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTGSNNPLGMNSNSEKIPFHPFFSTKD- 79
Cdd:MTH00033 147 VSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDi 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 80 -SITMLTMMSLMMMVSLKYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFY 158
Cdd:MTH00033 227 lGFLILFGVFVIIGIEPRIETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPIL 306
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 170516364 159 NKSKFQGIQFYPMNQIMFWMMVMTIILLTWVGKKPV-EEPYITTGQILTTMYFSYFMM 215
Cdd:MTH00033 307 DRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLV 364
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-221 |
4.11e-62 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 197.47 E-value: 4.11e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTGSNNPLGMNSNSEKIPFHPFFSTKDS 80
Cdd:MTH00086 139 LSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDA 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 81 ITMLTMMSLMMMVSLkYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFYNk 160
Cdd:MTH00086 219 YNIIFWLVFIIFSLF-YPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVN- 296
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 170516364 161 skFQGIQFYPMNQIMFWMMVMTIILLTWVGKKPVEEPYITTGQILTTMYFSYFMMNTWVNK 221
Cdd:MTH00086 297 --NYTSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLMLFLFY 355
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-213 |
1.61e-54 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 178.83 E-value: 1.61e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLH-FILPFIIAAMTMIHLIFLHQTGSNNPLG----MNSNSEKIPFHPFF 75
Cdd:COG1290 161 FGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYY 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 76 STKDSITMLTMMSLMMMVSLKYPyiLGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIP--NKLGGVIALVASIAITL 153
Cdd:COG1290 241 TVKDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLF 318
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 154 IMPFYNKSKFQGIQFYPMNQIMFWMMVMTIILLTWVGKKPveEPYITTGQILTTMYFSYF 213
Cdd:COG1290 319 LLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFF 376
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
58-204 |
4.43e-45 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 147.41 E-value: 4.43e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 58 NPLGMNSNSEKIPFHPFFSTKDSITMLTMMSLMMMVSLKYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPN 137
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 170516364 138 KLGGVIALVASIAITLIMPFYNKSKFQGiQFYPMNQIMFWMMVMTIILLTWVGKKPVEEPYITTGQI 204
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
109-209 |
5.32e-44 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 143.00 E-value: 5.32e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 109 PANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFYNKSKFQGIQFYPMNQIMFWMMVMTIILLTW 188
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80
|
90 100
....*....|....*....|.
gi 170516364 189 VGKKPVEEPYITTGQILTTMY 209
Cdd:pfam00032 81 LGKQPPTGPYTLLGQIATVYY 101
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
1-208 |
3.38e-39 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 138.19 E-value: 3.38e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTGSNNPL-GMNSNSEKIPFHPFFSTKD 79
Cdd:MTH00046 141 VDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLfSSNGYSDVVYFHSYFTVKD 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 80 SITMLTMMSLMMMVSLKYPYILGDPDNFIPANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIaLVASIAITLIMPFYN 159
Cdd:MTH00046 221 LFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVPTFN 299
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 170516364 160 KSKFQGIqfypMNQIMFWMMVMTIILLTWVGKKPVEEPYITTGQILTTM 208
Cdd:MTH00046 300 GSSVYSV----WRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSVL 344
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-57 |
2.58e-21 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 87.42 E-value: 2.58e-21
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 170516364 1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTGSN 57
Cdd:cd00284 144 FSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
1-81 |
8.87e-19 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 79.98 E-value: 8.87e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHF-ILPFIIAAMTMIHLIFLHQTGSNNPLGMNSNSEKIPFHPFFSTKD 79
Cdd:pfam13631 65 LSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKM 144
|
..
gi 170516364 80 SI 81
Cdd:pfam13631 145 LL 146
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-55 |
6.75e-18 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 78.19 E-value: 6.75e-18
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 170516364 1 LSAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFIIAAMTMIHLIFLHQTG 55
Cdd:pfam00033 135 LSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
98-164 |
2.12e-10 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 57.32 E-value: 2.12e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 170516364 98 PYILGDPdnfipANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFY-NKSKFQ 164
Cdd:CHL00058 59 PSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQ 121
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
109-164 |
7.87e-09 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 52.87 E-value: 7.87e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 170516364 109 PANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFY-NKSKFQ 164
Cdd:COG5679 66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIeNVNKFQ 122
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
109-176 |
2.00e-08 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 51.72 E-value: 2.00e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 170516364 109 PANSLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAITLIMPFY-NKSKFQGIQFYPMNQIMF 176
Cdd:TIGR01156 65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPFRRPVATTVF 133
|
|
| petB |
CHL00070 |
cytochrome b6 |
3-60 |
1.56e-07 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 50.10 E-value: 1.56e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 170516364 3 AIPYVGNQIVQWIWGGFAVDNPTLSRFFSLH-FILPFIIAAMTMIHLIFLHQTGSNNPL 60
Cdd:CHL00070 157 AIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
2-60 |
2.63e-07 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 49.71 E-value: 2.63e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 170516364 2 SAIPYVGNQIVQWIWGGFAVDNPTLSRFFSLH-FILPFIIAAMTMIHLIFLHQTGSNNPL 60
Cdd:PRK03735 164 EAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
|
|
|