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Conserved domains on  [gi|187473875|gb|ACD11687|]
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cytochrome b, partial (mitochondrion) [Archaeolemur majori]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-111 5.43e-81

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 241.47  E-value: 5.43e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187473875   1 FGSLLGTCLILQIVTGLFLAMHYTADAVTAFSSVAHICRDVNYGWIIRYIHANGASMFFLCLFIHVGRGIYYGSFMFSKT 80
Cdd:MTH00100  33 FGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLET 112

                         90       100       110
                 ....*....|....*....|....*....|.
gi 187473875  81 WNTGIMLLLTVMATAFMGYVLPWGQMSFWGA 111
Cdd:MTH00100 113 WNIGIILLFTVMATAFMGYVLPWGQMSFWGA 143
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-111 5.43e-81

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 241.47  E-value: 5.43e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187473875   1 FGSLLGTCLILQIVTGLFLAMHYTADAVTAFSSVAHICRDVNYGWIIRYIHANGASMFFLCLFIHVGRGIYYGSFMFSKT 80
Cdd:MTH00100  33 FGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLET 112

                         90       100       110
                 ....*....|....*....|....*....|.
gi 187473875  81 WNTGIMLLLTVMATAFMGYVLPWGQMSFWGA 111
Cdd:MTH00100 113 WNIGIILLFTVMATAFMGYVLPWGQMSFWGA 143
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-111 1.78e-48

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 153.29  E-value: 1.78e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187473875   1 FGSLLGTCLILQIVTGLFLAMHYTADAVTAFSSVAHICRDVNYGWIIRYIHANGASMFFLCLFIHVGRGIYYGSFM--FS 78
Cdd:cd00284   25 FGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKkpRE 104

                         90       100       110
                 ....*....|....*....|....*....|...
gi 187473875  79 KTWNTGIMLLLTVMATAFMGYVLPWGQMSFWGA 111
Cdd:cd00284  105 LTWVIGVILLLLTMATAFMGYVLPWGQMSYWGA 137
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-111 2.76e-44

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 142.14  E-value: 2.76e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187473875    1 FGSLLGTCLILQIVTGLFLAMHYTADAVTAFSSVAHICRDVNYGWIIRYIHANGASMFFLCLFIHVGRGIYYGSF--MFS 78
Cdd:pfam00033  16 FGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFsyPRE 95

                          90       100       110
                  ....*....|....*....|....*....|...
gi 187473875   79 KTWNTGIMLLLTVMATAFMGYVLPWGQMSFWGA 111
Cdd:pfam00033  96 LTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGA 128
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-111 3.74e-44

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 147.24  E-value: 3.74e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187473875   1 FGSLLGTCLILQIVTGLFLAMHYTADAVTAFSSVAHICRDVNYGWIIRYIHANGASMFFLCLFIHVGRGIYYGSFmfsK- 79
Cdd:COG1290   42 FGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY---Kk 118

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 187473875  80 ----TWNTGIMLLLTVMATAFMGYVLPWGQMSFWGA 111
Cdd:COG1290  119 prelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGA 154
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-111 5.43e-81

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 241.47  E-value: 5.43e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187473875   1 FGSLLGTCLILQIVTGLFLAMHYTADAVTAFSSVAHICRDVNYGWIIRYIHANGASMFFLCLFIHVGRGIYYGSFMFSKT 80
Cdd:MTH00100  33 FGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLET 112

                         90       100       110
                 ....*....|....*....|....*....|.
gi 187473875  81 WNTGIMLLLTVMATAFMGYVLPWGQMSFWGA 111
Cdd:MTH00100 113 WNIGIILLFTVMATAFMGYVLPWGQMSFWGA 143
CYTB MTH00119
cytochrome b; Provisional
 1-111 2.44e-74

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 224.78  E-value: 2.44e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187473875   1 FGSLLGTCLILQIVTGLFLAMHYTADAVTAFSSVAHICRDVNYGWIIRYIHANGASMFFLCLFIHVGRGIYYGSFMFSKT 80
Cdd:MTH00119  34 FGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 113

                         90       100       110
                 ....*....|....*....|....*....|.
gi 187473875  81 WNTGIMLLLTVMATAFMGYVLPWGQMSFWGA 111
Cdd:MTH00119 114 WNTGVILLLLLMATAFVGYVLPWGQMSFWGA 144
CYTB MTH00156
cytochrome b; Provisional
 1-111 4.47e-72

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 218.11  E-value: 4.47e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187473875   1 FGSLLGTCLILQIVTGLFLAMHYTADAVTAFSSVAHICRDVNYGWIIRYIHANGASMFFLCLFIHVGRGIYYGSFMFSKT 80
Cdd:MTH00156  23 FGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHT 102

                         90       100       110
                 ....*....|....*....|....*....|.
gi 187473875  81 WNTGIMLLLTVMATAFMGYVLPWGQMSFWGA 111
Cdd:MTH00156 103 WMSGVIILFLVMATAFLGYVLPWGQMSFWGA 133
CYTB MTH00074
cytochrome b; Provisional
 1-111 9.85e-71

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 215.32  E-value: 9.85e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187473875   1 FGSLLGTCLILQIVTGLFLAMHYTADAVTAFSSVAHICRDVNYGWIIRYIHANGASMFFLCLFIHVGRGIYYGSFMFSKT 80
Cdd:MTH00074  34 FGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKET 113

                         90       100       110
                 ....*....|....*....|....*....|.
gi 187473875  81 WNTGIMLLLTVMATAFMGYVLPWGQMSFWGA 111
Cdd:MTH00074 114 WNIGVILLFLVMATAFVGYVLPWGQMSFWGA 144
CYTB MTH00131
cytochrome b; Provisional
 1-111 1.01e-69

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 212.98  E-value: 1.01e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187473875   1 FGSLLGTCLILQIVTGLFLAMHYTADAVTAFSSVAHICRDVNYGWIIRYIHANGASMFFLCLFIHVGRGIYYGSFMFSKT 80
Cdd:MTH00131  33 FGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKET 112

                         90       100       110
                 ....*....|....*....|....*....|.
gi 187473875  81 WNTGIMLLLTVMATAFMGYVLPWGQMSFWGA 111
Cdd:MTH00131 113 WNIGVVLLLLVMMTAFVGYVLPWGQMSFWGA 143
CYTB MTH00191
cytochrome b; Provisional
 1-111 7.05e-69

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 210.16  E-value: 7.05e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187473875   1 FGSLLGTCLILQIVTGLFLAMHYTADAVTAFSSVAHICRDVNYGWIIRYIHANGASMFFLCLFIHVGRGIYYGSFMFSKT 80
Cdd:MTH00191  30 FGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKET 109

                         90       100       110
                 ....*....|....*....|....*....|.
gi 187473875  81 WNTGIMLLLTVMATAFMGYVLPWGQMSFWGA 111
Cdd:MTH00191 110 WNVGVILLILSMATAFLGYVLPWGQMSFWGA 140
CYTB MTH00145
cytochrome b; Provisional
 1-111 5.60e-65

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 200.52  E-value: 5.60e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187473875   1 FGSLLGTCLILQIVTGLFLAMHYTADAVTAFSSVAHICRDVNYGWIIRYIHANGASMFFLCLFIHVGRGIYYGSFMFSKT 80
Cdd:MTH00145  34 FGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHT 113

                         90       100       110
                 ....*....|....*....|....*....|.
gi 187473875  81 WNTGIMLLLTVMATAFMGYVLPWGQMSFWGA 111
Cdd:MTH00145 114 WNIGVTLLLLSMGTAFLGYVLPWGQMSFWGA 144
CYTB MTH00034
cytochrome b; Validated
 1-111 4.72e-63

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 195.69  E-value: 4.72e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187473875   1 FGSLLGTCLILQIVTGLFLAMHYTADAVTAFSSVAHICRDVNYGWIIRYIHANGASMFFLCLFIHVGRGIYYGSFMFSKT 80
Cdd:MTH00034  33 FGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIET 112

                         90       100       110
                 ....*....|....*....|....*....|.
gi 187473875  81 WNTGIMLLLTVMATAFMGYVLPWGQMSFWGA 111
Cdd:MTH00034 113 WNIGVILFLLTMLTAFVGYVLPWGQMSFWAA 143
CYTB MTH00016
cytochrome b; Validated
 1-111 6.54e-61

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 190.27  E-value: 6.54e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187473875   1 FGSLLGTCLILQIVTGLFLAMHYTADAVTAFSSVAHICRDVNYGWIIRYIHANGASMFFLCLFIHVGRGIYYGSFMFSKT 80
Cdd:MTH00016  34 FGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMET 113

                         90       100       110
                 ....*....|....*....|....*....|.
gi 187473875  81 WNTGIMLLLTVMATAFMGYVLPWGQMSFWGA 111
Cdd:MTH00016 114 WNIGVILLLLTMATAFLGYVLPWGQMSFWGA 144
CYTB MTH00022
cytochrome b; Validated
 1-111 1.69e-55

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 176.43  E-value: 1.69e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187473875   1 FGSLLGTCLILQIVTGLFLAMHYTADAVTAFSSVAHICRDVNYGWIIRYIHANGASMFFLCLFIHVGRGIYYGSFMFSKT 80
Cdd:MTH00022  32 FGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHV 111

                         90       100       110
                 ....*....|....*....|....*....|.
gi 187473875  81 WNTGIMLLLTVMATAFMGYVLPWGQMSFWGA 111
Cdd:MTH00022 112 WNVGVVIFLLTMATAFMGYVLPWGQMSFWGA 142
CYTB MTH00224
cytochrome b; Provisional
 1-111 9.72e-55

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 174.34  E-value: 9.72e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187473875   1 FGSLLGTCLILQIVTGLFLAMHYTADAVTAFSSVAHICRDVNYGWIIRYIHANGASMFFLCLFIHVGRGIYYGSFMFSKT 80
Cdd:MTH00224  34 YGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSET 113

                         90       100       110
                 ....*....|....*....|....*....|.
gi 187473875  81 WNTGIMLLLTVMATAFMGYVLPWGQMSFWGA 111
Cdd:MTH00224 114 WNIGVILFILTMATAFLGYVLPWGQMSFWGA 144
CYTB MTH00053
cytochrome b; Provisional
 1-111 3.74e-54

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 172.97  E-value: 3.74e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187473875   1 FGSLLGTCLILQIVTGLFLAMHYTADAVTAFSSVAHICRDVNYGWIIRYIHANGASMFFLCLFIHVGRGIYYGSFMFSKT 80
Cdd:MTH00053  34 FGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIV 113

                         90       100       110
                 ....*....|....*....|....*....|.
gi 187473875  81 WNTGIMLLLTVMATAFMGYVLPWGQMSFWGA 111
Cdd:MTH00053 114 WNVGVLIFLLMILTAFIGYVLPWGQMSFWAA 144
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-111 1.78e-48

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 153.29  E-value: 1.78e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187473875   1 FGSLLGTCLILQIVTGLFLAMHYTADAVTAFSSVAHICRDVNYGWIIRYIHANGASMFFLCLFIHVGRGIYYGSFM--FS 78
Cdd:cd00284   25 FGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKkpRE 104

                         90       100       110
                 ....*....|....*....|....*....|...
gi 187473875  79 KTWNTGIMLLLTVMATAFMGYVLPWGQMSFWGA 111
Cdd:cd00284  105 LTWVIGVILLLLTMATAFMGYVLPWGQMSYWGA 137
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-111 2.76e-44

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 142.14  E-value: 2.76e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187473875    1 FGSLLGTCLILQIVTGLFLAMHYTADAVTAFSSVAHICRDVNYGWIIRYIHANGASMFFLCLFIHVGRGIYYGSF--MFS 78
Cdd:pfam00033  16 FGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFsyPRE 95

                          90       100       110
                  ....*....|....*....|....*....|...
gi 187473875   79 KTWNTGIMLLLTVMATAFMGYVLPWGQMSFWGA 111
Cdd:pfam00033  96 LTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGA 128
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-111 3.74e-44

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 147.24  E-value: 3.74e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187473875   1 FGSLLGTCLILQIVTGLFLAMHYTADAVTAFSSVAHICRDVNYGWIIRYIHANGASMFFLCLFIHVGRGIYYGSFmfsK- 79
Cdd:COG1290   42 FGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY---Kk 118

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 187473875  80 ----TWNTGIMLLLTVMATAFMGYVLPWGQMSFWGA 111
Cdd:COG1290  119 prelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGA 154
CYTB MTH00033
cytochrome b; Provisional
 1-111 5.31e-42

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 141.61  E-value: 5.31e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187473875   1 FGSLLGTCLILQIVTGLFLAMHYTADAVTAFSSVAHICRDVNYGWIIRYIHANGASMFFLCLFIHVGRGIYYGSFMFSKT 80
Cdd:MTH00033  30 FGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLT 109

                         90       100       110
                 ....*....|....*....|....*....|.
gi 187473875  81 WNTGIMLLLTVMATAFMGYVLPWGQMSFWGA 111
Cdd:MTH00033 110 WIVGVLIFFIMMLTAFIGYVLPWGQMSFWAA 140
CYTB MTH00086
cytochrome b; Provisional
 1-111 8.70e-39

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 132.37  E-value: 8.70e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187473875   1 FGSLLGTCLILQIVTGLFLAMHYTADAVTAFSSVAHICRDVNYGWIIRYIHANGASMFFLCLFIHVGRGIYYGSFMFSKT 80
Cdd:MTH00086  22 FGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKV 101

                         90       100       110
                 ....*....|....*....|....*....|.
gi 187473875  81 WNTGIMLLLTVMATAFMGYVLPWGQMSFWGA 111
Cdd:MTH00086 102 WISGLTIYLLVMMEAFMGYVLVWAQMSFWAA 132
CYTB MTH00046
cytochrome b; Validated
 2-111 3.15e-26

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 99.29  E-value: 3.15e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187473875   2 GSLLGTCLILQIVTGLFLAMHYTADAVTAFSSVAHICRDVNYGWIIRYIHANGASMFFLCLFIHVGRGIYYGSFMFSKTW 81
Cdd:MTH00046  25 GFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVW 104

                         90       100       110
                 ....*....|....*....|....*....|
gi 187473875  82 NTGIMLLLTVMATAFMGYVLPWGQMSFWGA 111
Cdd:MTH00046 105 NVGFILYLLVMVEAFLGYILPWHQMSYWAA 134
PRK03735 PRK03735
cytochrome b6; Provisional
 1-109 4.80e-24

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 91.31  E-value: 4.80e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187473875   1 FGSLLGTCLILQIVTGLFLAMHYTADAVTAFSSVAHICRDVNYGWIIRYIHANGASMFFLCLFIHVGRGIYYGSFMFSK- 79
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110
                 ....*....|....*....|....*....|.
gi 187473875  80 -TWNTGIMLLLTVMATAFMGYVLPWGQMSFW 109
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYF 154
petB CHL00070
cytochrome b6
 1-109 3.57e-20

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 80.92  E-value: 3.57e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187473875   1 FGSLLGTCLILQIVTGLFLAMHYTADAVTAFSSVAHICRDVNYGWIIRYIHANGASMFFLCLFIHVGRGIYYGSFMFSK- 79
Cdd:CHL00070  36 LGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRe 115

                         90       100       110
                 ....*....|....*....|....*....|.
gi 187473875  80 -TWNTGIMLLLTVMATAFMGYVLPWGQMSFW 109
Cdd:CHL00070 116 lTWVTGVVLAVLTVSFGVTGYSLPWDQIGYW 146
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
56-111 6.70e-10

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 53.01  E-value: 6.70e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 187473875   56 SMFFLCLFIHVGRGIYYGSFMFSK--TWNTGIMLLLTVMATAFMGYVLPWGQMSFWGA 111
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGL 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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