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integrase, partial [Human immunodeficiency virus 2]
integrase( domain architecture ID 10488378)
integrase such as retroviral integrase that catalyzes the integration of viral DNA into host target DNA
List of domain hits
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Name | Accession | Description | Interval | E-value | |||
rve | pfam00665 | Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into ... |
59-145 | 1.43e-14 | |||
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site. : Pssm-ID: 459897 [Multi-domain] Cd Length: 98 Bit Score: 68.11 E-value: 1.43e-14
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IN_DBD_C | pfam00552 | Integrase DNA binding domain; Integrase mediates integration of a DNA copy of the viral genome ... |
225-268 | 1.44e-14 | |||
Integrase DNA binding domain; Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain. The central domain is the catalytic domain pfam00665. This domain is the carboxyl terminal domain that is a non-specific DNA binding domain. : Pssm-ID: 425747 Cd Length: 45 Bit Score: 66.65 E-value: 1.44e-14
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Integrase_Zn | pfam02022 | Integrase Zinc binding domain; Integrase mediates integration of a DNA copy of the viral ... |
10-45 | 1.33e-10 | |||
Integrase Zinc binding domain; Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. This domain is the amino-terminal domain zinc binding domain. The central domain is the catalytic domain pfam00665. The carboxyl terminal domain is a DNA binding domain pfam00552. : Pssm-ID: 426567 Cd Length: 36 Bit Score: 55.46 E-value: 1.33e-10
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transpos_IS3 super family | cl41295 | IS3 family transposase; |
113-198 | 2.07e-06 | |||
IS3 family transposase; The actual alignment was detected with superfamily member NF033516: Pssm-ID: 468052 [Multi-domain] Cd Length: 369 Bit Score: 48.72 E-value: 2.07e-06
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Name | Accession | Description | Interval | E-value | |||
rve | pfam00665 | Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into ... |
59-145 | 1.43e-14 | |||
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site. Pssm-ID: 459897 [Multi-domain] Cd Length: 98 Bit Score: 68.11 E-value: 1.43e-14
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IN_DBD_C | pfam00552 | Integrase DNA binding domain; Integrase mediates integration of a DNA copy of the viral genome ... |
225-268 | 1.44e-14 | |||
Integrase DNA binding domain; Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain. The central domain is the catalytic domain pfam00665. This domain is the carboxyl terminal domain that is a non-specific DNA binding domain. Pssm-ID: 425747 Cd Length: 45 Bit Score: 66.65 E-value: 1.44e-14
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transpos_IS481 | NF033577 | IS481 family transposase; null |
59-200 | 2.78e-12 | |||
IS481 family transposase; null Pssm-ID: 468094 [Multi-domain] Cd Length: 283 Bit Score: 65.69 E-value: 2.78e-12
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Integrase_Zn | pfam02022 | Integrase Zinc binding domain; Integrase mediates integration of a DNA copy of the viral ... |
10-45 | 1.33e-10 | |||
Integrase Zinc binding domain; Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. This domain is the amino-terminal domain zinc binding domain. The central domain is the catalytic domain pfam00665. The carboxyl terminal domain is a DNA binding domain pfam00552. Pssm-ID: 426567 Cd Length: 36 Bit Score: 55.46 E-value: 1.33e-10
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Tra5 | COG2801 | Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]; |
61-199 | 1.22e-08 | |||
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]; Pssm-ID: 442053 [Multi-domain] Cd Length: 309 Bit Score: 55.16 E-value: 1.22e-08
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transpos_IS3 | NF033516 | IS3 family transposase; |
113-198 | 2.07e-06 | |||
IS3 family transposase; Pssm-ID: 468052 [Multi-domain] Cd Length: 369 Bit Score: 48.72 E-value: 2.07e-06
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Name | Accession | Description | Interval | E-value | |||
rve | pfam00665 | Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into ... |
59-145 | 1.43e-14 | |||
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site. Pssm-ID: 459897 [Multi-domain] Cd Length: 98 Bit Score: 68.11 E-value: 1.43e-14
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IN_DBD_C | pfam00552 | Integrase DNA binding domain; Integrase mediates integration of a DNA copy of the viral genome ... |
225-268 | 1.44e-14 | |||
Integrase DNA binding domain; Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain. The central domain is the catalytic domain pfam00665. This domain is the carboxyl terminal domain that is a non-specific DNA binding domain. Pssm-ID: 425747 Cd Length: 45 Bit Score: 66.65 E-value: 1.44e-14
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transpos_IS481 | NF033577 | IS481 family transposase; null |
59-200 | 2.78e-12 | |||
IS481 family transposase; null Pssm-ID: 468094 [Multi-domain] Cd Length: 283 Bit Score: 65.69 E-value: 2.78e-12
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Integrase_Zn | pfam02022 | Integrase Zinc binding domain; Integrase mediates integration of a DNA copy of the viral ... |
10-45 | 1.33e-10 | |||
Integrase Zinc binding domain; Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. This domain is the amino-terminal domain zinc binding domain. The central domain is the catalytic domain pfam00665. The carboxyl terminal domain is a DNA binding domain pfam00552. Pssm-ID: 426567 Cd Length: 36 Bit Score: 55.46 E-value: 1.33e-10
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Tra5 | COG2801 | Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]; |
61-199 | 1.22e-08 | |||
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]; Pssm-ID: 442053 [Multi-domain] Cd Length: 309 Bit Score: 55.16 E-value: 1.22e-08
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transpos_IS3 | NF033516 | IS3 family transposase; |
113-198 | 2.07e-06 | |||
IS3 family transposase; Pssm-ID: 468052 [Multi-domain] Cd Length: 369 Bit Score: 48.72 E-value: 2.07e-06
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Blast search parameters | ||||
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