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Conserved domains on  [gi|257786446|gb|ACV66936|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Brotogeris chrysoptera]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.35e-155

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 440.03  E-value: 1.35e-155
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446   1 MTPLAKLISTMSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAHS 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  81 TGQWDITQLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLITALLLSTMMKLPPTTILLITSHSLNPSLLTLMAVM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 161 SIAFGGWMGLNQTQIRKIMAFSSISHLGWMIIIIAYNPKLTLLAFYLYILMTASIFLTMNKINVLKLPTLMTSWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTATTTIISMLSLLGLFFYLRLAYCSTITLPPNPPNKMKQWPPKTP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 257786446 321 TNTLIPVLTSLSILLLPLTPLMPTIT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.35e-155

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 440.03  E-value: 1.35e-155
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446   1 MTPLAKLISTMSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAHS 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  81 TGQWDITQLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLITALLLSTMMKLPPTTILLITSHSLNPSLLTLMAVM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 161 SIAFGGWMGLNQTQIRKIMAFSSISHLGWMIIIIAYNPKLTLLAFYLYILMTASIFLTMNKINVLKLPTLMTSWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTATTTIISMLSLLGLFFYLRLAYCSTITLPPNPPNKMKQWPPKTP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 257786446 321 TNTLIPVLTSLSILLLPLTPLMPTIT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-298 1.80e-31

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 123.30  E-value: 1.80e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  10 TMSILLGTTITITSNHWMTAWAGLEINTLSILPLIS-KSHHPRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDITQ 88
Cdd:COG1007  108 LLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAG 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  89 LTHPL------------ACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLITALLLSTMMKL----PPTTILLITSHSLNPS 152
Cdd:COG1007  188 IAAALaagganspllllGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAD 267

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 153 ---LLTLMAVMSIAFGGWMGLNQTQIRKIMAFSSISHLGWMII-IIAYNPK-LTLLAFYL--YILMTASIFLTMNKINVL 225
Cdd:COG1007  268 wqlLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYLlaYLFMNLGAFAVILLLSRK 347

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 257786446 226 KLPTLMTS-----WTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTATTTIISMLSLLGLFFYLRLAY 298
Cdd:COG1007  348 GGEAEEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-271 1.35e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 106.63  E-value: 1.35e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446   23 SNHWMTAWAGLEINTLSILPLI-SKSHHPRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446   91 HPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSL-ITALLLSTMMKLPPttILLITSHSLNPS-------LLTLMAVMSI 162
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGG--YGLIRRSLLYLPsspfiqqILLILAIISM 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  163 AFGGWMGLNQTQIRKIMAFSSISHLGWMIIIIA----YNPKLTLLAFYLYILMTASIFLTMNKINVLKLPT---LMTS-- 233
Cdd:pfam00361 159 LLGSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTrniRDYGgl 238

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 257786446  234 WTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELV 271
Cdd:pfam00361 239 AKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAV 276
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 13-297 2.12e-25

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 106.19  E-value: 2.12e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446   13 ILLGTTITITSNHWMTAWAGLEINTLSILPLIS-KSHHPRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDITQLTH 91
Cdd:TIGR01770 111 ALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLL 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446   92 PL------------ACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLITALLLSTMMKLPPTTILL-------ITSHSLNPS 152
Cdd:TIGR01770 191 FLsngmlnisllllGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQI 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  153 LLTLMAVMSIAFGGWMGLNQTQIRKIMAFSSISHLGWMIIIIAYNPKLTLLA--FYL--YILMTASIFLTMNKINVLKLP 228
Cdd:TIGR01770 271 FLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKDE 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 257786446  229 -----TLMTSWTKT-PMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTATTTIISMLSLLGLFFYLRLA 297
Cdd:TIGR01770 351 wieyiSDFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.35e-155

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 440.03  E-value: 1.35e-155
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446   1 MTPLAKLISTMSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAHS 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  81 TGQWDITQLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLITALLLSTMMKLPPTTILLITSHSLNPSLLTLMAVM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 161 SIAFGGWMGLNQTQIRKIMAFSSISHLGWMIIIIAYNPKLTLLAFYLYILMTASIFLTMNKINVLKLPTLMTSWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTATTTIISMLSLLGLFFYLRLAYCSTITLPPNPPNKMKQWPPKTP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 257786446 321 TNTLIPVLTSLSILLLPLTPLMPTIT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-324 1.63e-127

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 368.75  E-value: 1.63e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446   1 MTPLAKLISTMSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAHS 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  81 TGQWDITQLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLITALLLSTMMKLPPTtILLITSHSLNPSLLTLMAVM 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPF-ALILQIAPTNPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 161 SIAFGGWMGLNQTQIRKIMAFSSISHLGWMIIIIAYNPKLTLLAFYLYILMTASIFLTMNKINVLKLPTLMTSWTKTPML 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTATTTIISMLSLLGLFFYLRLAYCSTITLPPNPPNKMKQWPPKTP 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319


                 ....
gi 257786446 321 TNTL 324
Cdd:MTH00135 320 QLTL 323
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-327 1.12e-124

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 361.55  E-value: 1.12e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446   1 MTPLAKLISTMSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAHS 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  81 TGQWDITQLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLITALLLSTMMKLPPTTILLITSHSLNPSLLTLMAVM 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 161 SIAFGGWMGLNQTQIRKIMAFSSISHLGWMIIIIAYNPKLTLLAFYLYILMTASIFLTMNKINVLKLPTLMTSWTKTPML 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTATTTIISMLSLLGLFFYLRLAYCSTITLPPNPPNKMKQWPPKTP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320


                 ....*..
gi 257786446 321 TNTLIPV 327
Cdd:MTH00070 321 TNNLLSL 327
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-326 3.36e-110

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 324.88  E-value: 3.36e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446   1 MTPLAKLISTMSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAHS 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  81 TGQWDITQLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLITALLLSTMMKLPPTTILLITSHSLNPSLLTLMAVM 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 161 SIAFGGWMGLNQTQIRKIMAFSSISHLGWMIIIIAYNPKLTLLAFYLYILMTASIFLTMNKINVLKLPTLMTSWTKTPML 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTATTTIISMLSLLGLFFYLRLAYCSTITLPPNPPN-KMKQWPPKT 319
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNmKMKWQFENT 320


                 ....*..
gi 257786446 320 PTNTLIP 326
Cdd:MTH00105 321 KPMTLLP 327
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-327 1.06e-93

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 283.01  E-value: 1.06e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446   1 MTPLAKLISTMSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAHS 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  81 TGQWDITQLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLITALLLSTMMKLPPTTILLITSHSLNPSLLTLMAVM 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 161 SIAFGGWMGLNQTQIRKIMAFSSISHLGWMIIIIAYNPKLTLLAFYLYILMTASIFLTMNKINVLKLPTLMTSWTKTPML 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTATTTIISMLSLLGLFFYLRLAYCSTITLPPNPPNKMKQWPPKTP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320


                 ....*..
gi 257786446 321 TNTLIPV 327
Cdd:MTH00200 321 SNLLVGL 327
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 12-307 6.95e-85

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 260.25  E-value: 6.95e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  12 SILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDITQLTH 91
Cdd:MTH00041  12 SIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLN 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  92 PLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLITALLLSTMMKLPPTTILLITSHSLNPSLLTLMAVMSIAFGGWMGLN 171
Cdd:MTH00041  92 TLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLN 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 172 QTQIRKIMAFSSISHLGWMIIIIAYNPKLTLLAFYLYILMTASIFLTMNKINVLKLPTLMTSWTKTPMLNTTLMLTLLSL 251
Cdd:MTH00041 172 QTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSL 251

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 257786446 252 AGLPPLTGFLPKWLIIQELVKQEMTATTTIISMLSLLGLFFYLRLAYCSTITLPPN 307
Cdd:MTH00041 252 GGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQ 307
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-300 1.85e-59

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 194.66  E-value: 1.85e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446   1 MTPLAKLISTMSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAHS 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  81 TGqwditqLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLITALLLSTMMKLPPTTILlitSHSLNPSLLTLMAVM 160
Cdd:MTH00160  82 LM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 161 SIAFGGWMGLNQTQIRKIMAFSSISHLGWMIIIIAYNPKLTLLAFYLYILMTASIFLTMNKINVLKLPTLMTSWTKTPML 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTATTTIISMLSLLGLFFYLRLAYCS 300
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSS 292
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-302 3.30e-50

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 170.45  E-value: 3.30e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446   1 MTPLAKLISTMSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAHS 80
Cdd:MTH00144   1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  81 TGQWDITqlthplacLLLTSAIAIKLGLTPFHFWFPEVLQGSSLITALLLSTMMKLPPT-TILLITSHSLNPSLLTLMAV 159
Cdd:MTH00144  81 SFSWFSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLfLLSNFLDLYWLAYLLCVISV 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 160 MSIAFGGWMGLNQTQIRKIMAFSSISHLGWMIIIIAYNPKLTLLAFYLYILMTASIFLTMNKINvLKLPTLMTSWTKTPM 239
Cdd:MTH00144 153 LSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGD-SGSMKDLGSLKPSYK 231

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 257786446 240 LNTTLMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTATTTIISMLSLLGLFFYLRLAYCSTI 302
Cdd:MTH00144 232 TGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-319 6.36e-48

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 164.57  E-value: 6.36e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446   1 MTPLAKLISTMSILlGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTInahs 80
Cdd:MTH00011   4 TFPTMFLFSSTMTL-GTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM---- 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  81 tgQWDITQLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLITALLLSTMMKLPPTTILLITSHSLNPSLLTLMAVM 160
Cdd:MTH00011  79 --MWSFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAM 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 161 SIAFGGWMGLNQTQIRKIMAFSSISHLGWMIIIIAYNPKLTLLAFYLYILMTASIFLTMNKINVLKLPTLMTSWTKTPML 240
Cdd:MTH00011 157 SALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTT 236

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 257786446 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTATTTIISMLSLLGLFFYLRLAYCSTITLPPNPPNKMKQWPPKT 319
Cdd:MTH00011 237 SMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPTFSSLKSAPYEPKT 315
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 12-302 1.27e-43

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 152.90  E-value: 1.27e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  12 SILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSStinahSTGQWDItqLTH 91
Cdd:MTH00197   6 IIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGG-----SLSFSNL--YLS 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  92 PLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLITALLLSTMMKLPPTTILLITSHslNPSLLTLMAVMSIAFGGWMGLN 171
Cdd:MTH00197  79 LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGGMN 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 172 QTQIRKIMAFSSISHLGWMIIIIAYNPKLTLLAFYLYILMTASIFLTMNKINVLKLPTLMTSWTKTPMLNTTLMLTLLSL 251
Cdd:MTH00197 157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSL 236

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 257786446 252 AGLPPLTGFLPKWLIIQELVKQEMTATTTIISMLSLLGLFFYLRLAYCSTI 302
Cdd:MTH00197 237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI 287
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-298 1.80e-31

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 123.30  E-value: 1.80e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  10 TMSILLGTTITITSNHWMTAWAGLEINTLSILPLIS-KSHHPRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDITQ 88
Cdd:COG1007  108 LLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAG 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  89 LTHPL------------ACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLITALLLSTMMKL----PPTTILLITSHSLNPS 152
Cdd:COG1007  188 IAAALaagganspllllGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAD 267

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 153 ---LLTLMAVMSIAFGGWMGLNQTQIRKIMAFSSISHLGWMII-IIAYNPK-LTLLAFYL--YILMTASIFLTMNKINVL 225
Cdd:COG1007  268 wqlLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYLlaYLFMNLGAFAVILLLSRK 347

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 257786446 226 KLPTLMTS-----WTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTATTTIISMLSLLGLFFYLRLAY 298
Cdd:COG1007  348 GGEAEEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 2.44e-31

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 121.29  E-value: 2.44e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  13 ILLGTTITITSNHWMTAWAGLEINTLSILPLI-SKSHHPRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDI----- 86
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyinl 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  87 --------TQLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLITALLLSTMMKLPPTTILLitSHSLNPSLLTLMA 158
Cdd:MTH00196  82 vlnsgqsfSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 159 VMSIAFGGWMGLNQTQIRKIMAFSSISHLGWMIIIIAYNP----KLTLLAFYLYILMTASIFLTMNKINVLK--LPTLMT 232
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 257786446 233 SWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTATTTIISMLSLLGLFFYLRL 296
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 1.02e-27

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 112.99  E-value: 1.02e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  14 LLGTTITITSNHWMTAWAGLEINTLSILPLIS-KSHHPRAVEAATKYFLVQATASALVLF--------SSTIN----AHS 80
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYgmsllygaTGSLSfagiAKA 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  81 TGQWDITQLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLITALLLSTMMKL----PPTTILLITSHSLNPS---L 153
Cdd:PRK05777 193 LADGSGNSLLLLFGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqV 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 154 LTLMAVMSIAFGGWMGLNQTQIRKIMAFSSISHLGWMIIIIAYNPKLTL--LAFYL--YILMTASIF---LTMNKINVLK 226
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFgviSLLRRKGGEA 352

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 257786446 227 lpTLMTSWT----KTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTATTTIISMLSLLGLFFYLRL 296
Cdd:PRK05777 353 --ESISDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-271 1.35e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 106.63  E-value: 1.35e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446   23 SNHWMTAWAGLEINTLSILPLI-SKSHHPRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446   91 HPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSL-ITALLLSTMMKLPPttILLITSHSLNPS-------LLTLMAVMSI 162
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGG--YGLIRRSLLYLPsspfiqqILLILAIISM 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  163 AFGGWMGLNQTQIRKIMAFSSISHLGWMIIIIA----YNPKLTLLAFYLYILMTASIFLTMNKINVLKLPT---LMTS-- 233
Cdd:pfam00361 159 LLGSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTrniRDYGgl 238

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 257786446  234 WTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELV 271
Cdd:pfam00361 239 AKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAV 276
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 13-297 2.12e-25

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 106.19  E-value: 2.12e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446   13 ILLGTTITITSNHWMTAWAGLEINTLSILPLIS-KSHHPRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDITQLTH 91
Cdd:TIGR01770 111 ALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLL 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446   92 PL------------ACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLITALLLSTMMKLPPTTILL-------ITSHSLNPS 152
Cdd:TIGR01770 191 FLsngmlnisllllGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQI 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  153 LLTLMAVMSIAFGGWMGLNQTQIRKIMAFSSISHLGWMIIIIAYNPKLTLLA--FYL--YILMTASIFLTMNKINVLKLP 228
Cdd:TIGR01770 271 FLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKDE 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 257786446  229 -----TLMTSWTKT-PMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTATTTIISMLSLLGLFFYLRLA 297
Cdd:TIGR01770 351 wieyiSDFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 13-296 9.74e-25

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 104.33  E-value: 9.74e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  13 ILLGTTITITSNHWMTAWAGLEINTLSILPLIS-KSHHPRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDI----T 87
Cdd:MTH00199 106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginS 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  88 QLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLITALLLSTMMKLPPTTILLITSHSLNpsLLTLMAVMSIAFGGW 167
Cdd:MTH00199 186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSIIYGAI 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 168 MGLNQTQIRKIMAFSSISHLGWMIIIIAYNP----KLTLLAFYLYILMTASIFLTMNKINVLK--LPTLMTSWTKTPMLN 241
Cdd:MTH00199 264 GALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRKNPVIA 343

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 257786446 242 TTLMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTATTTIISMLSLLGLFFYLRL 296
Cdd:MTH00199 344 LTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 14-296 4.82e-22

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 95.98  E-value: 4.82e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  14 LLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDITQLTH-- 91
Cdd:COG0651  117 LAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAArl 196

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  92 --------PLACLLLTSAIAIKLGLTPFHFWFPEVL-QGSSLITALLLSTMMKLPP----TTILLITSHSLNPSLLTLMA 158
Cdd:COG0651  197 aeldpgllLAAFALLLVGFGIKAALFPLHFWLPDAYpAAPSPVSALLSGLLTKVGVyailRVLTLLFGADPALFLGTLLL 276

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 159 VM---SIAFGGWMGLNQTQIRKIMAFSSISHLGWMIIIIAYNPKLTLLAFYLYI----LMTASIFLT----MNKINVLKL 227
Cdd:COG0651  277 VLgllTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLFLAagaiERATGTRDL 356

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 257786446 228 PTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTATTTIISMLSLLGLFFYLRL 296
Cdd:COG0651  357 DKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 15-296 1.59e-18

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 86.45  E-value: 1.59e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  15 LGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAV---------EAATKYFLVQATASALVLFS------------ 73
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGcalyfgftgneg 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  74 --STINAHSTGQWDITQLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLITALLLSTMMKLppTTILLITSHSLNP 151
Cdd:MTH00198 279 mlGTILSATLETTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 152 SLLTLMAVMSIAFGGWMGLNQTQIRKIMAFSSISHLGWMIIIIAYNPKLTLLAFYLYI---LMTASIFLTM--------- 219
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAvtyLVSALASFTVictleefgt 436

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 220 -------------NKINVLKLPTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTATTTIISMLS 286
Cdd:MTH00198 437 rtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIYYLVA 516

                        330
                 ....*....|....*..
gi 257786446 287 LLGL-------FFYLRL 296
Cdd:MTH00198 517 LFAIictcisaFYYIRI 533
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-298 7.29e-16

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 78.38  E-value: 7.29e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  33 LEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDITQLTHPL--------ACLLLTSAIAI 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGALaenptvvtAFGFVLLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 105 KLGLTPFHFWFPEVLQG-SSLITALLLSTMMKLPPTTILLITSH------SLNPSLLTLMAV---MSIAFGGWMGLNQTQ 174
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTvfggdfRFALGLGWLLAVlalLSMLVGSLAALGQDD 294

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 175 IRKIMAFSSISHLGWMIIIIAYNPKLTLLAFYLYI----LMTASIFL-------TMNKINVLKLPTLMTswtKTPMLNTT 243
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhaLMKGALFLaagaievTYGTRRLSELSGLGR---RMPLTAAA 371

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 257786446 244 LMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTATTTIISMLSLLGLFFYLRLAY 298
Cdd:PRK08375 372 FAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-263 3.08e-11

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 64.25  E-value: 3.08e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  51 RAVEAATKYFLVQATASALVLFS-STINAHSTGQWDI---------TQLTHPLACLL----LTSAIAIKLGLTPFHFWFP 116
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVYGfSWLYGLSGGEIELqeivnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTP 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 117 EVLQGS-----------SLITALLLSTMMklppTTILLITSHSLNPSLLTLMAVMSIAFGGWMGLNQTQIRKIMAFSSIS 185
Cdd:CHL00049 239 DVYEGSptpvvaflsvtSKVAASALATRI----FDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIG 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 186 HLGWMII-IIAYNPK------LTLLAFYlyILMT----ASIFLTMNKINVLKLPTLMTSWTKTPMLNTTLMLTLLSLAGL 254
Cdd:CHL00049 315 QIGYVIIgIIVGDSNdgyasmITYMLFY--IFMNlgtfACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGI 392


                 ....*....
gi 257786446 255 PPLTGFLPK 263
Cdd:CHL00049 393 PPLAGFFGK 401
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-195 5.68e-11

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 63.18  E-value: 5.68e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  49 HPRAVEAATKYFLVQATASALVLFSSTINAHSTGQW--DITQLTH--------PLACLLLTSAIAIKLGLTPFHFWFPEV 118
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplpltaqLLLFLAFFIAFAVKVPMFPFHTWLPDA 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 119 L-QGSSLITALLLSTMMK----------LPpttILLITSHSLNPSLLTLmAVMSIAFGGWMGLNQTQIRKIMAFSSISHL 187
Cdd:COG1008  236 HvEAPTAGSVLLAGVLLKmggygllrfaLP---LFPEASAYFAPLLAAL-GVIGIIYGALVALAQTDLKRLIAYSSVSHM 311


                 ....*...
gi 257786446 188 GWMIIIIA 195
Cdd:COG1008  312 GFVLLGIF 319
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 8.38e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 62.81  E-value: 8.38e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  33 LEINTLSILPLIS-KSHHPRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDITQLTHPL----------ACLLLTSA 101
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMAYLAVKMsenptvvakiALALFIAG 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 102 IAIKLGLTPFHFWFPEVL-QGSSLITALLLST-------MMKLPPTTILLITSHSLNPSLLTLMAVMSIAFGGWMGLNQT 173
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYpAAPSSISAMLLVIkqaglyaLARVLFSIYGPAINLATVGWVIIILGCLTMFVGVAMAVVQK 309

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 174 QIRKIMAFSSISHLGWMII-----IIAYNPklTLLAFYLYILMTASIFLTMNKInVLKLPTLMTSWT------------- 235
Cdd:PRK08376 310 DVKRLLAYHSVSQIGYMLLglgvgLAALGD--PAMASYGEIALAGGIYHIVNHA-LYKALLFLTAGAviyetgtrnlnel 386

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 257786446 236 -----KTPMLNTTLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376 387 gglarTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 6.88e-10

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 60.06  E-value: 6.88e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  50 PRAVEAATKYFLVQATASALVLF-SSTINAHSTGQwdiTQLTH-------------PLACLLLTSAIAIKLGLTPFHFWF 115
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSAialalitspslglALALVFVIAGIAFKISAVPFHQWT 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 116 PEVLQGSSLITALLLSTMMKLPPTTI---LLITSHSLNPS----LLTLMAVMSIAFGGWMGLNQTQIRKIMAFSSISHLG 188
Cdd:PRK02504 234 PDVYEGSPTPVVAFLSVGSKAAGFALairLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 189 WMIIIIAYNPKLTLLAFYLYILmtasIFLTMN--KINVLKLPTLMTS----------WTKTPMLNTTLMLTLLSLAGLPP 256
Cdd:PRK02504 314 FVMIGLVAGTEAGYASMVFYLL----AYLFMNlgAFACVILFSLRTGtdqisdyaglYQKDPLLTLGLSLCLLSLGGIPP 389


                 ....*..
gi 257786446 257 LTGFLPK 263
Cdd:PRK02504 390 LAGFFGK 396
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-292 8.37e-10

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 59.95  E-value: 8.37e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446   50 PRAVEAATKYFLVQATASALVLFS----STINAHSTGQWDITQLTHPLAC-----LLLTSAIAIKLGLTPFHFWFPEV-L 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAilglYFLGGGTFDLLELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  120 QGSSLITALLLSTMMKLPPTTILLI-------TSHSLNPSLLTLmAVMSIAFGGWMGLNQTQIRKIMAFSSISHLGWMII 192
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFnlplfpdASLYFAPVLAAL-GVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  193 -IIAYNPKLTLLAFYLYI---LMTASIFL----TMNKINVLKLPTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKW 264
Cdd:TIGR01972 311 gIFSFNELGISGAVFQMIshgLITAALFLlvgvLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEF 390

                         250       260
                  ....*....|....*....|....*...
gi 257786446  265 LIIQELVKqemtaTTTIISMLSLLGLFF 292
Cdd:TIGR01972 391 LILLGSFK-----VNPVVAFLAALGIVL 413
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 23-298 1.18e-09

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 59.62  E-value: 1.18e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  23 SNHWMTAWAGLEINTLSILPLISKSHHpRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDIT-------QLTHP--- 92
Cdd:PRK08668 117 ANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFAdisqgliNDTSTgfa 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  93 -LACLLLTSAIAIKLGLTPFHFWFPE-----------VLQG--SSLITALLLSTMMKLPPTTILL----ITSHSLNPSLL 154
Cdd:PRK08668 196 lIVFLFLLAFGVAKAGIFPLHVWAPDayseapqsfsaVLSGqlSKLGAYGFLLVLYVLPGTKLFSefgtYRGVPLFNYIL 275

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 155 TLMAVMSIAFGGWMGLNQTQIRKIMAFSSISHLGWMIIIIAYNPKLTL-----------LAFYLYILMTASIFLTMNKIN 223
Cdd:PRK08668 276 AWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFagglfhvfnhaLFKGLFFLIFAAVIYRTGTTK 355

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 257786446 224 VLKLPTLMtswTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTATTTIISMLSLLGLFFYLRLAY 298
Cdd:PRK08668 356 ISEMGGLI---EKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLA 427
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-296 8.89e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 56.67  E-value: 8.89e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  33 LEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAHSTGQW---DITQLTHPL--------ACLLLTSA 101
Cdd:PRK12662 139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLnmgDMFLIIQDLptnraiqiGVLFIMVG 218

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 102 IAIKLGLTPFHFWFPEVLQGS-SLITALLLSTMMKLPPTTI-----------LLITSHSLNPSLLTLmAVMSIAFGGWMG 169
Cdd:PRK12662 219 LFIKAALFPFHKWLIQAYSEApSFISVFFSGTSTKVMIYLIirivydvfkanFVFTTLPFNNVFMIL-AALAIVFGSVLA 297

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 170 LNQTQIRKIMAFSSISHLGWMIIIIAYNPKLTLLAFYLYI----LMTASIFLTMNKI----NVLKLPTLMTSWTKTPMLN 241
Cdd:PRK12662 298 ILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsIVKSALFMVSGSIsyhfGTTKLEDCLNLWKSMPKIT 377

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 257786446 242 TTLMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTATTTIISMLSLLGLFFYLRL 296
Cdd:PRK12662 378 LAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKI 432
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-210 1.84e-08

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 55.53  E-value: 1.84e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  13 ILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATA------SALVLFSSTINAHSTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  87 TQLTHP----------LACLLLTSAIAIKLGLTPFHFWFPEV-LQGSSLITALLLSTMMKLPPTTILLITS-------HS 148
Cdd:PRK08676 191 TELAAHasllspsvlgASFLFIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 257786446 149 LNPSLLTLMAVMSIAFGGWMGLNQTQIRKIMAFSSISHLGWMIIIIAYNPKLTLLAFYLYIL 210
Cdd:PRK08676 271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHML 332
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 48-271 3.73e-08

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 54.77  E-value: 3.73e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  48 HHPRAVEAATKYFLVQAT------ASALVLFS-------STINAHstGQWDITQLTHPLACLLLTSAIAIKLGLTPFHFW 114
Cdd:COG1009  156 EKPSARRAARKAFLVTRVgdlgllLGILLLGAiagtlnfSELLAA--APTILSSPLLTLILLLLLLGAFGKSAQFPLHFW 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 115 FPEVLQG----SSLITAlllSTMMKlppTTI-LLITSH---SLNPSLLTLMAVMSIA---FGGWMGLNQTQIRKIMAFSS 183
Cdd:COG1009  234 LPDAMEGptpvSALLHA---ATMVK---AGVyLLARLSplfALSPVWLTVVAIIGAItalFAALIALAQTDIKRVLAYST 307

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 184 ISHLGWMIIII---AYNPKLTLL---AFY--LYILMTASIFLTMNKINVLKLPTLmtsWTKTPMLNTTLMLTLLSLAGLP 255
Cdd:COG1009  308 VSQLGYMFLALgvgAYVAALFHLlthAFFkaLLFLGAGSVIHATGTRDIRKMGGL---RKKMPITAITFLIGALSLAGIP 384

                        250
                 ....*....|....*.
gi 257786446 256 PLTGFLPKWLIIQELV 271
Cdd:COG1009  385 PFAGFFSKEAILEAAL 400
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-195 5.16e-08

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 54.05  E-value: 5.16e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  50 PRAVEAATKYFLVQATASALVLFS----STINAHSTGQWDITQLTHP-----------LACLLltsAIAIKLGLTPFHFW 114
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLLNLplppgvqywlfLAFFI---AFAVKMPMFPLHTW 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 115 FPEVLQ-----GSSLITALLLST----MMK--LPpttILLITSHSLNPSLLTLmAVMSIAFGGWMGLNQTQIRKIMAFSS 183
Cdd:PRK05846 234 LPDAHVqaptaGSVLLAGILLKMgaygLLRfsLP---LFPDASHEFAPIIITL-GVIAIIYGALVALAQTDIKKLIAYSS 309

                        170
                 ....*....|..
gi 257786446 184 ISHLGWMIIIIA 195
Cdd:PRK05846 310 ISHMGFVTLGIF 321
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 110-266 1.06e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 53.38  E-value: 1.06e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 110 PFHFWFPEVLQGSSLITALLLS-TMMKLpptTILLITShsLNPSL---------LTLMAVMSIAFGGWMGLNQTQIRKIM 179
Cdd:PRK12647 213 PFHFWLPNAMEAPTPVSAYLHSaTMVKA---GIYLLAR--LNPVLggtplwqtiLPLFGGLTMLTGALLAVRQTDLKLIL 287

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 180 AFSSISHLGWMIIIIAYNPKLTLLAFYLYI----LMTASIFLTMNKIN-------VLKLPTLmtsWTKTPMLNTTLMLTL 248
Cdd:PRK12647 288 AYSTVSALGTLVMLLGLGSELAIKAAVLFLvahsLYKGALFMVAGIIDhetgtrdITKLGGL---RRAMPITAAAALLAA 364

                        170
                 ....*....|....*...
gi 257786446 249 LSLAGLPPLTGFLPKWLI 266
Cdd:PRK12647 365 LSMAGLPPLFGFLAKELI 382
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-308 2.53e-07

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 51.96  E-value: 2.53e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  34 EINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDITQLTHPL-----------ACLLLTSAI 102
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDIHNALlvnptspviygGLLLLIFGL 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 103 AIKLGLTPFHFWFPEVLQGSSLITALLLSTMMKLPPTTILLIT-----SHSLNPSLLTLMAVMSIA---FGGWMGLNQTQ 174
Cdd:PRK06277 210 LYGSGLPPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLVIfklfgGLSYFPSAQGVLIALSVLamvFGVVMALLQTD 289

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 175 IRKIMAFSSISHLGWMIIIIAYNPKLTLLAFYLY----ILMTASIFLTMNKINVLK----LPTLMTSWTKTPMLNTTLML 246
Cdd:PRK06277 290 YKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHainhVIYKSALFLGAGIVSYRTktsnLRKLGGLLPVMPVVAFMVLC 369

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 257786446 247 TLLSLAGLPPLTGFLPKWLIIQELVKQEMTATTTIISMLSLLGLFFYLRLAYcsTITLPPNP 308
Cdd:PRK06277 370 AKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFY--LIYLKPKP 429
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 92-268 2.10e-06

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 49.57  E-value: 2.10e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  92 PLACLLLTSAI--AIKLGLtpfHFWFPEVLQGSSLITALLLSTMMkLPPTTILLITSHSLNPS------LLTLMAVMSIA 163
Cdd:MTH00032 226 IIGILLLIGCIgkSAQLGL---HTWLPDAMEGPTPVSALIHAATM-VTAGVFLMIRSFPLFEKapltllIITIFGALTAF 301

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 164 FGGWMGLNQTQIRKIMAFSSISHLGWMIIIIAYNPKLTLLAFYL--YILMTASIFL---------TMNKINVLKLPTLMT 232
Cdd:MTH00032 302 FAATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIEGSHNVGLFHLvnHAFFKALLFLsagsvihstTVDEQDMRKMGGLIH 381

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 257786446 233 SwtkTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00032 382 S---IPFTYTMMLIGSFSIMGLPYLTGFYSKDLILE 414
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-195 2.36e-06

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 49.26  E-value: 2.36e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  55 AATKYFLVQATASALVLFSSTINAHSTGQ--WDITQLTH---PLACLLLTS-----AIAIKLGLTPFHFWFPEVL-QGSS 123
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLYagfliAFGVKLPIFPLHTWLPDAHgEASA 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 257786446 124 LITALLLSTMMKLPPTTI------LLITSHSLNPSLLTLMAVMSIAFGGWMGLNQTQIRKIMAFSSISHLGWMIIIIA 195
Cdd:PRK12561 218 PVSMILAGVLLKMGGYALirfnvqMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGIA 295
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 20-211 2.56e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 48.77  E-value: 2.56e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  20 TITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSsTI----NAHstgqwdiTQLTHPLAC 95
Cdd:PRK06458 124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFG-TIlvyaNAA-------TVMGDGEMA 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  96 LLLTSAIAI----------------------KLGLTPFHFWFPE-----------VLQGSSLITALLLSTMMKLppttIL 142
Cdd:PRK06458 196 ILWTELLKHaslldptlmklafvflligfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALYAVLRYYI----LI 271

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 143 LITSHSLNPS-LLTLMAVMSIAFGGWMGLNQTQIRKIMAFSSISHLGWMIIIIAYNPKLTLLAFYLYILM 211
Cdd:PRK06458 272 DAAIGSDFPGrLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLN 341
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-266 4.17e-06

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 48.16  E-value: 4.17e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  55 AATKYFLVQATASALVL--FSSTINAHSTGQWDITQL---THPLAC-LLLTSAI----AIKLGLTPFHFWFPEV-LQGSS 123
Cdd:PRK06473 158 AATKFLLYTAISGILILvsFLGLVWLSGASSFDYEPLrshTLPLSTqLLLLAPIlvgfGIKIPLVPFHTWLPDAhVEAST 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 124 LITALLLSTMMKLPPTTIL-------LITSHSLNPSLLTLmAVMSIAFGGWMGLNQTQIRKIMAFSSISHLGWMIIIIAY 196
Cdd:PRK06473 238 PVSVLLAGVLLKLGTYGLLrfgvglfPEAWVYLAPWLATW-AVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAA 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 197 NPKLTLLAFYLYI----LMTASIFLTMNKI-------NVLKLPTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWL 265
Cdd:PRK06473 317 ATPLSILAAVFQMishgLISALLFLLVGVVykktgsrDVDVLRGLLNPERGLPITGSLMILGVMASAGIPGMVGFIAEFL 396


                 .
gi 257786446 266 I 266
Cdd:PRK06473 397 V 397
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 72-305 5.50e-06

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 48.15  E-value: 5.50e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  72 FSSTINAHSTGqwDITQLThpLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLITALLLSTMMKLPPTTILLITSHSLNP 151
Cdd:MTH00020 194 FSSVFNMVVSA--PSSDIT--LICLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEQ 269

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 152 SLLTLMAV-----MSIAFGGWMGLNQTQIRKIMAFSSISHLGWMIIIIAynpkLTLLAFYLYILMT-----ASIFLTMNK 221
Cdd:MTH00020 270 APLALIIVtivgsLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACG----LSHYSISLFHLMNhaffkALLFLSAGS 345

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 222 I--------NVLKLPTLMTSwtkTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTATTTIISMLS-LLGLFF 292
Cdd:MTH00020 346 VihalsdeqDMRKMGGLISF---LPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSaLLTAFY 422

                        250
                 ....*....|...
gi 257786446 293 YLRLAYCSTITLP 305
Cdd:MTH00020 423 SIRLIYLTFLSNT 435
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 79-263 7.99e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 47.61  E-value: 7.99e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  79 HSTGQWDITQL-THPLACLLLTSAIAI-------KLGLTPFHFWFPEVLQGSSLITALLLST-MMKlppTTILLI----- 144
Cdd:PRK12644 182 QAAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAaMVK---AGIYLVarlap 258

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 145 ---TSHSLNPSLLTLmAVMSIAFGGWMGLNQTQIRKIMAFSSISHLGWMIIIIAYNPKLTLLA----FYLYILMTASIFL 217
Cdd:PRK12644 259 gfaDVPVWRPTVLVL-GLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAglamLLAHALFKAALFL 337

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 257786446 218 TMNKIN-------VLKLPTLmtsWTKTPMLNTTLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644 338 VVGIIDhstgtrdIRKLSGL---GRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
10-195 1.19e-05

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 47.00  E-value: 1.19e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  10 TMSILLGTTITITSNHW---MTAWA--GLEINTLsilpLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAHSTGQW 84
Cdd:PRK08168 106 LAGVLAAVHLLVLSDHLlvlIAAWAaiSLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSL 181

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  85 DITQL---------THPL--ACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLITALLLSTM-----MKLPPTTILLITSHS 148
Cdd:PRK08168 182 SLSALwahlaaqgaSPSLqaAALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAGVvnlggFVLIRFAPLLEQAPP 261

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 257786446 149 LNpSLLTLMAVMSIAFGGWMGLNQTQIRKIMAFSSISHLGWMIIIIA 195
Cdd:PRK08168 262 AR-WLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLLECG 307
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
34-315 1.80e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 46.48  E-value: 1.80e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  34 EINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFS--------STIN-AHSTGQWDITQLTHPLACL--LLTSAI 102
Cdd:PRK12663 138 EVMLIASFVLITLGQEREQLRGAIKYVVLNLIGSWLFLLGigllygtfGTLNmAHIAMRLNDMGDTATLTTIalLFLLAF 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 103 AIKLGLTPFhFWFPEVLQGSSLITALLLSTMMK-------LPPTTILLITSHSLNPSLLTLMAVMSIAFGGWMGLNQTQI 175
Cdd:PRK12663 218 GMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVIGALGALAYKDI 296

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 176 RKIMAFSSISHLGWMIIIIAYNPKLTLLA--FYLY---ILMTAsIFLTMNKINVL----KLPTLMTSWTKTPMLNTTLML 246
Cdd:PRK12663 297 RRIAGYQVISSIGFILLGLALGTPAGINGaiFYLVhdmVVKTA-LFLIAGSLVRLtgyrSLQYLGGLYRKEPLFGALFLI 375

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 257786446 247 TLLSLAGLPPLTGFLPKWLIIQELVKQE---MTATTTIISMLSLLGLFFYLRLAYCSTITLPPNPPNKMKQW 315
Cdd:PRK12663 376 LIFAIGGLPPFSGFWGKVLLVQGALDNGayiLLALMLITSLITMYSLFRIFFLAYWGDKDGEEVNFKPIPLY 447
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 50-268 2.47e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 45.73  E-value: 2.47e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  50 PRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDITQL----------THPLACLLLTSAIAIKLGLTPFHFWFPEVL 119
Cdd:PRK12665 157 AARVRAGVTYVMVSMVSSLLFLIGIALVYAATGTLNMADLavrldelpsgTRTALFAVLLVAFGIKAAVFPLSFWLPDSY 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 120 -QGSSLITALLLSTMMK-----LPPTTILLITSHSLNpSLLTLMAVMSIAFGGWMGLNQTQIRKIMAFSSISHLGWMIII 193
Cdd:PRK12665 237 pTAPAPVTAVFAGLLTKvgvyaIIRTHTLLFPGGGLD-TLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFG 315

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 194 IAYNPKLTLLAFYLY----ILMTASIFLTMNKI-------NVLKLPTLMTSwtkTPMLNTTLMLTLLSLAGLPPLTGFLP 262
Cdd:PRK12665 316 IALSTVAGLSGAIYYvahhITVQTTLFLVVGLIerqagssSLRRLGGLAKA---SPLLAVLFFVPALNLGGIPPFSGFIG 392


                 ....*.
gi 257786446 263 KWLIIQ 268
Cdd:PRK12665 393 KVALLE 398
PRK12650 PRK12650
DUF4040 family protein;
79-263 3.62e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 45.80  E-value: 3.62e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  79 HSTGQWDITQLTHPLACLLLTSAIAiKLGLTPFHFWFPEVLQGSSLITALL---------------LSTMMKLPPT-TIL 142
Cdd:PRK12650 196 HSDVWAEKPGLTTVVAVLIAVAAFT-KSAQFPFHFWLPEAMAAITPVSAFLhaaavvkagiylllrFSPVFHDVAVwNWL 274

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 143 LITShslnpSLLTlmAVMSIAFGgwmgLNQTQIRKIMAFSSISHLGWMIIIIAYNPKLTLLAFYLYI----LMTASIFLT 218
Cdd:PRK12650 275 LIIV-----GMIT--ALMGAVFA----VQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTlahaLFKSSLFML 343

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 257786446 219 MNKIN----VLKLPTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12650 344 IGVVDhqagTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 3.80e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 45.59  E-value: 3.80e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  48 HHPRAVEAATKYFLVQAtASALVLFSSTINAHS-TGQWDITQL-----------THPL---ACLLLTSAIAIKLGLTPFH 112
Cdd:PRK12649 156 HRPESVYGATKSLLITA-GGGLFMFAGFLLLHViTGTYDIATIlqdselienikGHPLfliTLILIFIGAAAKSAQGPFY 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 113 FWFPEVLQGSSLITALLLSTMMkLPPTTILLITSH---SLNPSLLTLMA---VMSIAFGGWMGLNQTQIRKIMAFSSISH 186
Cdd:PRK12649 235 IWLPNAMEAPTPVSAFLHSATM-VKAGVYLVARIHpifSGTEAWFILVSgtgMITMVLAGFLAFRQTDIKAILAYSTISQ 313

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 187 LGWMIIIIAYN----PKLTLLAFYLYIL----MTASIFLTMNKI-------NVLKLPTLMTswtKTPMLNTTLMLTLLSL 251
Cdd:PRK12649 314 LAYLMTMYGYTtyhePGLGVAAATFHLLnhatFKACLFLVAGIVaheaatrDIRKLGGLRK---EMPITFIVASIAALAM 390

                        250
                 ....*....|..
gi 257786446 252 AGLPPLTGFLPK 263
Cdd:PRK12649 391 AGIPPLNGFLSK 402
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-271 3.90e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 45.33  E-value: 3.90e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  33 LEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDITQLTH--PLACLLLTSAIAIKLGLTP 110
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 111 FHFWFPEVLQGSSLITALLLSTMMKLPPTTILLITSHSLNPS--LLTLMAVMSIAFGGWMGLNQTQIRKIMAFSSISHLG 188
Cdd:PRK07234 203 SGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLdlIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLG 282

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 189 WMIIIIAYNPKLTLlafyLYILMTASIFLTMNKINVLKLptlmTSWTKTPMLN---TTLMLTLLSLAGLPPLTGFLPKWL 265
Cdd:PRK07234 283 FILAAPLVGGLYAL----AHGLVKSTLFLCAGALPSRNF----TELISQMLGIgkwIPLTMASFSIAGFPLLAGFVSKVL 354


                 ....*.
gi 257786446 266 IIQELV 271
Cdd:PRK07234 355 TLKNLL 360
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-268 1.99e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 43.16  E-value: 1.99e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  55 AATKYFLVQATASALVLF----------SSTINAHSTGQWDITQLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSL 124
Cdd:PRK07363 158 ASIKFLIYTAVSGLLVLAaflgivwlsgSTSFDYDAISTQNLSLNTQLILLTGLLLGFGIKIPLVPLHTWLPDAYTEASP 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 125 ITALLLSTMMKLPPTTILLITSHSLNPSLLTLMA-------VMSIAFGGWMGLNQTQIRKIMAFSSISHLGWMIIIIAYN 197
Cdd:PRK07363 238 AVAILLGGVLAKLGTYGLLRFGLQLFPQTWSLVApglaiigTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 198 PKLTLLAFYLYI----LMTASIFLTMNKI-------NVLKLPTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK07363 318 TQLSLLGAVAQMishgLILALLFHLVGIVerkvgtrDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVAEFIV 397


                 ..
gi 257786446 267 IQ 268
Cdd:PRK07363 398 FQ 399
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 34-291 2.15e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 43.18  E-value: 2.15e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  34 EINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAH-STGQWDITQLTHP-----LACLLLTSAIAIKLG 107
Cdd:PRK08667 141 EIMALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFiQTGSFELSPLGASagilsLVFLLLFLGFGIKAG 220

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 108 LTPFHFWFPEVLQGS-SLITALLLSTMMKLPPTTILLITSHSLNPS-----LLTLMAVMSIAFGGWMGLNQTQIRKIMAF 181
Cdd:PRK08667 221 IIPFHKWLPYAHPASpSNVSALMSGVMLKVAVYGLVRFLMDVLSPElwwgvLILLAGSISALLGVIYALKEHDLKGLLAY 300

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 182 SSISHLG--------WMIIIIAYNPKLTLLA-------------FYLYILMTA-SIFLTMNKINVLKLPTLMTSwtkTPM 239
Cdd:PRK08667 301 SSIENIGiilmgiglYVIFGVYGLDTLALLAlggalfhslnhalFKSLLFLTAgSVVHATGTRNIEKMGGLVKL---MPY 377

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 257786446 240 LNTTLMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTATTTI-ISMLSLLGLF 291
Cdd:PRK08667 378 TSALFLVGAVSIAALPPFNGFASELLLYESFFQSFSVADPLIkILLFSVLAIF 430
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 11-289 4.66e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 41.73  E-value: 4.66e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  11 MSILLGTTITITSNhWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVqATASALVLF--SSTINAHSTGQWD--- 85
Cdd:PRK06589 124 LTILIGVLIALSSD-LFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKI-LMISALLLFlpAVILIYTKTGNLDfvs 201

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  86 --ITQLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLITALLLSTMM----KLPPTTILLITSHSLNP-------S 152
Cdd:PRK06589 202 ggLFSKNQSIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALLHAVIVvktgLFCIYKILLYIFGLSYLqrifaefN 281

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 153 LLTLMAVMSIAFGGWMGLNQTQIRKIMAFSSISHLGWMIIIIAYNPKLTLLAFYLYIL----MTASIFLTMNKINVLK-- 226
Cdd:PRK06589 282 WLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLVshsfAKICLFYSMGSIYSLKke 361

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 257786446 227 --LPTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTaTTTIISMLSLLG 289
Cdd:PRK06589 362 dqVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQP-WLSIIVMLVVIA 425
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 80-213 5.36e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 41.86  E-value: 5.36e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  80 STGQWDITQLTH-------PLACLLLtsAIAIKLGLTPFHFWFPEVLQGSSLITALLLSTMMKLPPTTILLITSHSLNPS 152
Cdd:MTH00211 187 NLNSWEISQLFIlnldltlFLLGLLL--AAMGKSAQFGFHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRLSPLFQNN 264

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 257786446 153 LLTLMAVMSIA-----FGGWMGLNQTQIRKIMAFSSISHLGWMIIIIAYNPKltLLAFyLYILMTA 213
Cdd:MTH00211 265 QLILGAVLLLGaltmlFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNQP--QLAF-LHICTHA 327
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 13-296 6.59e-04

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 41.29  E-value: 6.59e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  13 ILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDITQLTH- 91
Cdd:PRK08377 117 LMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGTLNMAHIAQl 196

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  92 ---------PLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSL-ITALLLSTMMK---LPPTTILLITSHSLNPS----LL 154
Cdd:PRK08377 197 agtidptvaQVGLALLIFGLAVEAELFPLNAWAPDAYQAAPHpITVMFSAFVVKaglYAMARILYLMQNANGWSsvlkLV 276

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 155 TLMAVMSIAFGGWMGLNQTQIRKIMAFSSISHLGWMIIIIAYNPKLTLLAFYLYIL----MTASIFLTMNKINVLKLPTL 230
Cdd:PRK08377 277 IIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMInhaiVKALLFLAVGYVGITLGGTE 356

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 231 MTSWT----KTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTATTTIISMLSLLGLFFYLRL 296
Cdd:PRK08377 357 IEKFEglgkRMPLTALALTIGALSTVGIPLFNVFWSKFRIILAGLSAGYTWPVALVLGASVVEAVYYFRL 426
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
 7-270 7.99e-04

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 41.31  E-value: 7.99e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446   7 LISTMSI-LLGTTITITSNHWMTAWAGLEINTLS---ILPLISKSHHPRAVEAATKYFlvqatASALVLFSSTINAHSTG 82
Cdd:PRK06459  74 LSSLYILtILGMAIVLTSDNYLLFLAGWEIMTIPsyvAIALTKKNKRPAFVFMAFGEL-----STVLILAGFAWAFIISG 148

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  83 QWDITQLTHPLACLLLTSAIAIKLGLTPFHF--WFPEVL-QGSSLITALLLSTMMKLPPTTILLITSHSLNPS------L 153
Cdd:PRK06459 149 TTNFSYLPSPVPLILASFGFIIKMGMMPFLVseWLPIAHgNAPSNFSAILSATMTLMGVYGILKMTILTQTIPigyfglT 228

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 154 LTLMAVMSIAFGGWMGLNQTQIRKIMAFSSISHLGWMII-----IIAYNPKLTLLAFYLYILMTASIFLTMNKINVLKLP 228
Cdd:PRK06459 229 ILAIGAFSILFGALYAYVSENVKGLLAFSTIENNGAILValglyMVTKQLITSIEHFSLITVILYSFAHSVAKTGLFLSS 308

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 257786446 229 TLMTSWTKT-------PMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:PRK06459 309 GLQEKQSITyskkirnRWIELGLTLLASSLSGLLPNIGGVASWLLLESL 357
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-194 1.13e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 40.68  E-value: 1.13e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 101 AIAIKLGLTPFHFWFPEV-----LQGSSLITALLLST----MMKLpPTTILLITSHSLNPSLLTlMAVMSIAFGGWMGLN 171
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILLKLggygLVRL-SWPILPLGAQNLAPAVIA-MGIVGIVYGSFATCR 316

                         90       100
                 ....*....|....*....|...
gi 257786446 172 QTQIRKIMAFSSISHLGWMIIII 194
Cdd:MTH00226 317 QIDVKRLVAYSSVAHMGLVSITL 339
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 33-267 1.46e-03

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 40.34  E-value: 1.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  33 LEINTLSILPLISKSHHPRAVEAATKYFLVQATAS------ALVLFSSTINAHSTGQWDITQLTHPLACLLLTSAIAIKL 106
Cdd:PRK06525 142 FEITGLCSWALISYYQSPKALRSALKALLITHIGSlglylaAATLFLQTGTFALSALSGLHGSLKYLVFLGILFAAWGKS 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 107 GLTPFHFWFPEVLQGSSLITALLLSTMMKLPPTTILLITSHSLNPS------LLTLMAVMSIAFGGWMGLNQTQIRKIMA 180
Cdd:PRK06525 222 AQLPFYSWLPDAMEAPTPASAYLHAASMVKVGVYIFARAIQSMGPIphvigyVGAVMAIVTLLYGFLMYLPQQDMKRLLA 301

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 181 FSSISHLGWMIIIIAY---NPKLTLLAFYLYILMTASI----FLTMNKIN----VLKLPTLMTSWTKTPMLNTTLMLTLL 249
Cdd:PRK06525 302 YSTITQLGYMFFGLSLailGSRLALEGSIAYIFNHAFAkslfFLVAGALSyscgTRLLPRLRGVLKKLPLVGVGFCVAAL 381

                        250
                 ....*....|....*...
gi 257786446 250 SLAGLPPLTGFLPKWLII 267
Cdd:PRK06525 382 AITGVPPFNGFFSKFPIF 399
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 107-272 2.18e-03

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 39.81  E-value: 2.18e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 107 GLTPFHFWFPEVLQGSSLITALLLSTM-MKLPPTTILLITSHSLNPSL----LTLMAVMSIAF-GGWMGLNQTQIRKIMA 180
Cdd:PRK08042 195 GIIPLHGWVPQAHANASAPAAALFSTVvMKIGLLGILTLSLLGGNAPLwwgvALLVLGMITAFvGGLYALMEHNIQRLLA 274

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 181 FSSISHLGWMII--------IIAYNPKLTLLAFY--LYILMTASIFLTM---------NKINVLKLPTLMTSWTKTPMLN 241
Cdd:PRK08042 275 YHTLENIGIILLglgagvtgIALEQPALIALGLVggLYHLLNHSLFKSVlflgagsvwFRTGHRDIEKLGGIGKKMPVIS 354

                        170       180       190
                 ....*....|....*....|....*....|.
gi 257786446 242 TTLMLTLLSLAGLPPLTGFLPKWLIIQELVK 272
Cdd:PRK08042 355 IAMLVGLMAMAALPPLNGFAGEWVIYQSFFK 385
PRK12646 PRK12646
DUF4040 family protein;
110-220 3.20e-03

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 39.35  E-value: 3.20e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 110 PFHFWFPEVLQGSSLITALLLSTMMKLPPTTILLITSHSLNPS-----LLTLMAVMSIAFGGWMGLNQTQIRKIMAFSSI 184
Cdd:PRK12646 228 PFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFRFTPLLGLSnmyiyIVTFVGLITMLFGSITALKQWDLKGILAYSTI 307

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 257786446 185 SHLGWMIIII------AYNPKLTLLAFYLYILMtASIFLTMN 220
Cdd:PRK12646 308 SQLGMIMAMVgigggyAQHQQDAIASIYVFVLF-AALFHLMN 348
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 152-300 3.25e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 39.24  E-value: 3.25e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 152 SLLTLMAVMSiafggwmGLNQTQIRKIMAFSSISHLGWMIIIIAYN-PKLTLLAFYLYILMTASIFLTMNKI-----NVL 225
Cdd:MTH00209 247 SLTTLMASMS-------ANVESDLKKIIALSTLSQLGLMMCSLGLNqPELAFFHLITHALFKALLFICAGNIihshgHSQ 319

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 257786446 226 KLPTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTATTTIISMLSL-LGLFFYLRLAYCS 300
Cdd:MTH00209 320 DIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTsLTAAYSMRLSYFS 395
ndhD CHL00011
NADH dehydrogenase subunit 4
 101-194 3.25e-03

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 39.16  E-value: 3.25e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 101 AIAIKLGLTPFHFWFP----EVLQGSSLITALLLSTMMKLPPTTI---LLITSHSLNPSLLTLMAVMSIAFGGWMGLNQT 173
Cdd:CHL00011 220 AYAVKLPIIPLHTWLPdthgEAHYSTCMLLAGILLKMGAYGLIRInmeLLPHAHSIFSPWLVIVGAIQIIYAASTSLGQR 299

                         90       100
                 ....*....|....*....|.
gi 257786446 174 QIRKIMAFSSISHLGWMIIII 194
Cdd:CHL00011 300 NLKKRIAYSSVSHMGFIIIGI 320
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
50-191 4.64e-03

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 38.72  E-value: 4.64e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  50 PRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDITQL--THPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLITA 127
Cdd:PRK12668 139 KAAVRAGFRYLLVHVLGGVLLLAGILLHYAETGSFAFGAIagLGGTAAWLILIGFGVNAAFPPLHAWLPDAYPEATVTGS 218

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 257786446 128 LLLS---------TMMKLPPTTILLITshslnpsLLTLMAVmsiaFGGWMGLNQTQIRKIMAFSSISHLGWMI 191
Cdd:PRK12668 219 VFLSafttktavyALARAFPGTELLIY-------IGAAMAV----YGVFFALLENDLRRLLSYHIVSQVGYMV 280
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-195 8.56e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 37.76  E-value: 8.56e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446  55 AATKYFLVQATASALVLFSSTINAHSTG--QWDITQLTHP----------LACLLLtsAIAIKLGLTPFHFWFPEVL-QG 121
Cdd:PRK02546 166 AATKFILYTAGSSLFILLAALAMAFYGDtpTFDMTALAAKdfglgfqllcYAGLLI--AYGVKLPIVPLHTWLPDAHgEA 243

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786446 122 SSLITALLLSTMMKLPPTTIL------LITSHSLNPSLLTLMAVMSIAFGGWMGLNQTQIRKIMAFSSISHLGWMIIIIA 195
Cdd:PRK02546 244 TAPVHMLLAGILLKMGGYALLrmnagmLPDAHAQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGIG 323
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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