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Conserved domains on  [gi|257786484|gb|ACV66955|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Brotogeris sanctithomae]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-340 1.40e-148

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 421.92  E-value: 1.40e-148
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484   1 LISTMSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDI 80
Cdd:MTH00112   7 LIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDI 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  81 TQLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLPPTTILLITSHSLNPTFLTLMAIMSIAFGG 160
Cdd:MTH00112  87 TQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 161 WMGLNQTQTRKIMAFSSISHLGWMVIIIAYNPKLTLLTLYIYILMTTSIFLTMNKINALKLPTLLTSWTKTPTLNTTLML 240
Cdd:MTH00112 167 WGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLML 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 241 TLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLAYCSTITLPPSPPNKMKQWPPKTSTNTLIP 320
Cdd:MTH00112 247 TLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTA 326

                        330       340
                 ....*....|....*....|
gi 257786484 321 TFTSLSILLLPLAPLMPTIT 340
Cdd:MTH00112 327 TLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-340 1.40e-148

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 421.92  E-value: 1.40e-148
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484   1 LISTMSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDI 80
Cdd:MTH00112   7 LIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDI 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  81 TQLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLPPTTILLITSHSLNPTFLTLMAIMSIAFGG 160
Cdd:MTH00112  87 TQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 161 WMGLNQTQTRKIMAFSSISHLGWMVIIIAYNPKLTLLTLYIYILMTTSIFLTMNKINALKLPTLLTSWTKTPTLNTTLML 240
Cdd:MTH00112 167 WGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLML 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 241 TLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLAYCSTITLPPSPPNKMKQWPPKTSTNTLIP 320
Cdd:MTH00112 247 TLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTA 326

                        330       340
                 ....*....|....*....|
gi 257786484 321 TFTSLSILLLPLAPLMPTIT 340
Cdd:MTH00112 327 TLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 4-292 1.59e-29

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 117.52  E-value: 1.59e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484   4 TMSILLGTTITITSNHWMTAWAGLEINTLSILPLIS-KSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITQ 82
Cdd:COG1007  108 LLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAG 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  83 LTHPL------------ACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKL----PPTTILLITSHSLNPT 146
Cdd:COG1007  188 IAAALaagganspllllGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAD 267

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 147 F---LTLMAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMVI-IIAYNP---KLTLLTLYIYILMTTSIFLTMNKI-NA 218
Cdd:COG1007  268 WqllLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPlgvSAALFYLLAYLFMNLGAFAVILLLsRK 347

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 257786484 219 LKLPTLLTSW----TKTPTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLAY 292
Cdd:COG1007  348 GGEAEEIEDLaglaRRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 17-262 1.12e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 101.24  E-value: 1.12e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484   17 SNHWMTAWAGLEINTLSILPLI-SKSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITQL-----------T 84
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484   85 HPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLT-TALLLSTVMKLPPttILLITSHSLNPT-------FLTLMAIMSI 156
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGG--YGLIRRSLLYLPsspfiqqILLILAIISM 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  157 AFGGWMGLNQTQTRKIMAFSSISHLGWMVIIIA----YNPKLTLLTLYIYILMTTSIFLTMNKINALKLPTLLTS----- 227
Cdd:pfam00361 159 LLGSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRdyggl 238

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 257786484  228 WTKTPTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQ 262
Cdd:pfam00361 239 AKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 7-291 3.55e-24

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 102.72  E-value: 3.55e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484    7 ILLGTTITITSNHWMTAWAGLEINTLSILPLIS-KSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITQLTH 85
Cdd:TIGR01770 111 ALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLL 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484   86 PL------------ACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLPPTTILL-------ITSHSLNPT 146
Cdd:TIGR01770 191 FLsngmlnisllllGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQI 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  147 FLTLMAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMVIIIAYNPKL----TLLTLYIYILMTTSIF---LTMNKINAL 219
Cdd:TIGR01770 271 FLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFgvlSLLRSYKDE 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 257786484  220 KLPTLLT----SWTKTPTLNTTLMLTLLSlAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLA 291
Cdd:TIGR01770 351 WIEYISDfaglFKTNPILAILILIFMFSL-AGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-340 1.40e-148

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 421.92  E-value: 1.40e-148
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484   1 LISTMSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDI 80
Cdd:MTH00112   7 LIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDI 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  81 TQLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLPPTTILLITSHSLNPTFLTLMAIMSIAFGG 160
Cdd:MTH00112  87 TQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 161 WMGLNQTQTRKIMAFSSISHLGWMVIIIAYNPKLTLLTLYIYILMTTSIFLTMNKINALKLPTLLTSWTKTPTLNTTLML 240
Cdd:MTH00112 167 WGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLML 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 241 TLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLAYCSTITLPPSPPNKMKQWPPKTSTNTLIP 320
Cdd:MTH00112 247 TLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTA 326

                        330       340
                 ....*....|....*....|
gi 257786484 321 TFTSLSILLLPLAPLMPTIT 340
Cdd:MTH00112 327 TLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 5-318 1.81e-123

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 358.35  E-value: 1.81e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484   5 MSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITQLT 84
Cdd:MTH00135  11 FSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMS 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  85 HPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLPPTtILLITSHSLNPTFLTLMAIMSIAFGGWMGL 164
Cdd:MTH00135  91 HPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPF-ALILQIAPTNPTLLITLGLTSTLVGGWGGL 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 165 NQTQTRKIMAFSSISHLGWMVIIIAYNPKLTLLTLYIYILMTTSIFLTMNKINALKLPTLLTSWTKTPTLNTTLMLTLLS 244
Cdd:MTH00135 170 NQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLS 249

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 257786484 245 LAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLAYCSTITLPPSPPNKMKQWPPKTSTNTL 318
Cdd:MTH00135 250 LGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQLTL 323
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 6-323 3.00e-121

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 352.69  E-value: 3.00e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484   6 SILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITQLTH 85
Cdd:MTH00070  12 SLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQT 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  86 PLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLPPTTILLITSHSLNPTFLTLMAIMSIAFGGWMGLN 165
Cdd:MTH00070  92 PLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLN 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 166 QTQTRKIMAFSSISHLGWMVIIIAYNPKLTLLTLYIYILMTTSIFLTMNKINALKLPTLLTSWTKTPTLNTTLMLTLLSL 245
Cdd:MTH00070 172 QTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSL 251

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 257786484 246 AGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLAYCSTITLPPSPPNKMKQWPPKTSTNTLIPTFT 323
Cdd:MTH00070 252 GGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNLLSLTI 329
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-323 1.13e-110

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 325.65  E-value: 1.13e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484   1 LISTMSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDI 80
Cdd:MTH00105   7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTI 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  81 TQLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLPPTTILLITSHSLNPTFLTLMAIMSIAFGG 160
Cdd:MTH00105  87 TKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 161 WMGLNQTQTRKIMAFSSISHLGWMVIIIAYNPKLTLLTLYIYILMTTSIFLTMNKINALKLPTLLTSWTKTPTLNTTLML 240
Cdd:MTH00105 167 WGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILL 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 241 TLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLAYCSTITLPPSPPN-KMKQWPPKTSTNTLI 319
Cdd:MTH00105 247 TLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNmKMKWQFENTKPMTLL 326


                 ....
gi 257786484 320 PTFT 323
Cdd:MTH00105 327 PTLI 330
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 5-323 1.56e-90

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 274.54  E-value: 1.56e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484   5 MSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITQLT 84
Cdd:MTH00200  11 LSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEML 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  85 HPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLPPTTILLITSHSLNPTFLTLMAIMSIAFGGWMGL 164
Cdd:MTH00200  91 GPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGGL 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 165 NQTQTRKIMAFSSISHLGWMVIIIAYNPKLTLLTLYIYILMTTSIFLTMNKINALKLPTLLTSWTKTPTLNTTLMLTLLS 244
Cdd:MTH00200 171 NQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLS 250

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 257786484 245 LAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLAYCSTITLPPSPPNKMKQWPPKTSTNTLIPTFT 323
Cdd:MTH00200 251 LGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLVGLLL 329
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 6-300 5.86e-82

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 252.54  E-value: 5.86e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484   6 SILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITQLTH 85
Cdd:MTH00041  12 SIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLN 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  86 PLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLPPTTILLITSHSLNPTFLTLMAIMSIAFGGWMGLN 165
Cdd:MTH00041  92 TLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLN 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 166 QTQTRKIMAFSSISHLGWMVIIIAYNPKLTLLTLYIYILMTTSIFLTMNKINALKLPTLLTSWTKTPTLNTTLMLTLLSL 245
Cdd:MTH00041 172 QTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSL 251

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 257786484 246 AGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLAYCSTITLPP 300
Cdd:MTH00041 252 GGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFP 306
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-322 5.31e-58

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 190.42  E-value: 5.31e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484   1 LISTMSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGqwdi 80
Cdd:MTH00160   8 LLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLM---- 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  81 tqLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLPPTTILlitSHSLNPTFLTLMAIMSIAFGG 160
Cdd:MTH00160  84 --LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIILSAIIGA 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 161 WMGLNQTQTRKIMAFSSISHLGWMVIIIAYNPKLTLLTLYIYILMTTSIFLTMNKINALKLPTLLTSWTKTPTLNTTLML 240
Cdd:MTH00160 159 IGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFL 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 241 TLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLAYCSTITLPPSPPNKMKQWPPKTSTNTLIP 320
Cdd:MTH00160 239 NLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILNFL 318


                 ..
gi 257786484 321 TF 322
Cdd:MTH00160 319 SF 320
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 7-296 9.22e-49

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 166.21  E-value: 9.22e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484   7 ILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITqlthp 86
Cdd:MTH00144  13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM----- 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  87 lacLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLPPT-TILLITSHSLNPTFLTLMAIMSIAFGGWMGLN 165
Cdd:MTH00144  88 ---SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLfLLSNFLDLYWLAYLLCVISVLSALVGSIGGLN 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 166 QTQTRKIMAFSSISHLGWMVIIIAYNPKLTLLTLYIYILMTTSIFLTMNKINaLKLPTLLTSWTKTPTLNTTLMLTLLSL 245
Cdd:MTH00144 165 QTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGD-SGSMKDLGSLKPSYKTGLSIISLLLSL 243

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 257786484 246 AGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLAYCSTI 296
Cdd:MTH00144 244 GGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 6-323 6.40e-48

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 164.18  E-value: 6.40e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484   6 SILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSctinahSTGQWDITQLTH 85
Cdd:MTH00011  14 TMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLG------MTMMWSFPSLLK 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  86 PLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLPPTTILLITSHSLNPTFLTLMAIMSIAFGGWMGLN 165
Cdd:MTH00011  88 NITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMN 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 166 QTQTRKIMAFSSISHLGWMVIIIAYNPKLTLLTLYIYILMTTSIFLTMNKINALKLPTLLTSWTKTPTLNTTLMLTLLSL 245
Cdd:MTH00011 168 QTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSL 247

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 257786484 246 AGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLAYCSTITLPPSPPNKMKQWPPKTSTNTLIPTFT 323
Cdd:MTH00011 248 GGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPTFSSLKSAPYEPKTKILISMCTLS 325
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 6-296 9.13e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 155.60  E-value: 9.13e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484   6 SILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSCtinahSTGQWDItqLTH 85
Cdd:MTH00197   6 IIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGG-----SLSFSNL--YLS 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  86 PLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLPPTTILLITSHslNPTFLTLMAIMSIAFGGWMGLN 165
Cdd:MTH00197  79 LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGGMN 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 166 QTQTRKIMAFSSISHLGWMVIIIAYNPKLTLLTLYIYILMTTSIFLTMNKINALKLPTLLTSWTKTPTLNTTLMLTLLSL 245
Cdd:MTH00197 157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSL 236

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 257786484 246 AGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLAYCSTI 296
Cdd:MTH00197 237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI 287
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 7-290 6.04e-32

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 122.83  E-value: 6.04e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484   7 ILLGTTITITSNHWMTAWAGLEINTLSILPLI-SKSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDI----- 80
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyinl 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  81 --------TQLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLPPTTILLitSHSLNPTFLTLMA 152
Cdd:MTH00196  82 vlnsgqsfSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 153 IMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMVIIIAYNP----KLTLLTLYIYILMTTSIFLTMNKINALKlpTLLTSW 228
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILALNVYK--NLIIEF 237

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 257786484 229 T----KTPTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRL 290
Cdd:MTH00196 238 SglsrRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 4-292 1.59e-29

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 117.52  E-value: 1.59e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484   4 TMSILLGTTITITSNHWMTAWAGLEINTLSILPLIS-KSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITQ 82
Cdd:COG1007  108 LLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAG 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  83 LTHPL------------ACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKL----PPTTILLITSHSLNPT 146
Cdd:COG1007  188 IAAALaagganspllllGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAD 267

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 147 F---LTLMAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMVI-IIAYNP---KLTLLTLYIYILMTTSIFLTMNKI-NA 218
Cdd:COG1007  268 WqllLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPlgvSAALFYLLAYLFMNLGAFAVILLLsRK 347

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 257786484 219 LKLPTLLTSW----TKTPTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLAY 292
Cdd:COG1007  348 GGEAEEIEDLaglaRRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
8-290 7.86e-26

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 107.21  E-value: 7.86e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484   8 LLGTTITITSNHWMTAWAGLEINTLSILPLIS-KSHHPRAVEAATKYFLVQATASALVLFSC--------TIN----AHS 74
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMsllygatgSLSfagiAKA 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  75 TGQWDITQLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKL----PPTTILLITSHSLNPT---F 147
Cdd:PRK05777 193 LADGSGNSLLLLFGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqV 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 148 LTLMAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMVIIIAYNPKL----TLLTLYIYILMTTSIFLTmnkINALKLP- 222
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEgysaVLFYLLAYLFMTLGAFGV---ISLLRRKg 349

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 257786484 223 ---TLLTSWT----KTPTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRL 290
Cdd:PRK05777 350 geaESISDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 17-262 1.12e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 101.24  E-value: 1.12e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484   17 SNHWMTAWAGLEINTLSILPLI-SKSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITQL-----------T 84
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484   85 HPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLT-TALLLSTVMKLPPttILLITSHSLNPT-------FLTLMAIMSI 156
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGG--YGLIRRSLLYLPsspfiqqILLILAIISM 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  157 AFGGWMGLNQTQTRKIMAFSSISHLGWMVIIIA----YNPKLTLLTLYIYILMTTSIFLTMNKINALKLPTLLTS----- 227
Cdd:pfam00361 159 LLGSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRdyggl 238

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 257786484  228 WTKTPTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQ 262
Cdd:pfam00361 239 AKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 7-290 1.92e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 103.17  E-value: 1.92e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484   7 ILLGTTITITSNHWMTAWAGLEINTLSILPLIS-KSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDI----T 81
Cdd:MTH00199 106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginS 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  82 QLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLPPTTILLITSHSLNptFLTLMAIMSIAFGGW 161
Cdd:MTH00199 186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSIIYGAI 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 162 MGLNQTQTRKIMAFSSISHLGWMVIIIAYNP----KLTLLTLYIYILMTT---SIFLTMNKINALKLPTLLTSwTKTPTL 234
Cdd:MTH00199 264 GALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSIcsfSIILSLKLTKGLIVEVSGLS-RKNPVI 342

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 257786484 235 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRL 290
Cdd:MTH00199 343 ALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 7-291 3.55e-24

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 102.72  E-value: 3.55e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484    7 ILLGTTITITSNHWMTAWAGLEINTLSILPLIS-KSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITQLTH 85
Cdd:TIGR01770 111 ALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLL 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484   86 PL------------ACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLPPTTILL-------ITSHSLNPT 146
Cdd:TIGR01770 191 FLsngmlnisllllGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQI 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  147 FLTLMAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMVIIIAYNPKL----TLLTLYIYILMTTSIF---LTMNKINAL 219
Cdd:TIGR01770 271 FLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFgvlSLLRSYKDE 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 257786484  220 KLPTLLT----SWTKTPTLNTTLMLTLLSlAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLA 291
Cdd:TIGR01770 351 WIEYISDfaglFKTNPILAILILIFMFSL-AGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 8-290 4.69e-19

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 87.51  E-value: 4.69e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484   8 LLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITQLTH-- 85
Cdd:COG0651  117 LAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAArl 196

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  86 --------PLACLLLTSAIAIKLGLTPFHFWFPEVL-QGSSLTTALLLSTVMKLPP-------TTILLITSHSLNPTFLT 149
Cdd:COG0651  197 aeldpgllLAAFALLLVGFGIKAALFPLHFWLPDAYpAAPSPVSALLSGLLTKVGVyailrvlTLLFGADPALFLGTLLL 276

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 150 LMAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMVIIIAYNPKLTLLTLYIYI----LMTTSIFLT------------M 213
Cdd:COG0651  277 VLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLFLAagaieratgtrdL 356

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 257786484 214 NKINAL--KLPTLLTSWTktptlnttlmLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRL 290
Cdd:COG0651  357 DKLGGLgkRMPLTAAAFL----------IGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 9-290 8.82e-18

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 84.14  E-value: 8.82e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484   9 LGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAV---------EAATKYFLVQATASALVLFSCTINAHSTGQ-- 77
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  78 ------------WDITQLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLppTTILLITSHSLNP 145
Cdd:MTH00198 279 mlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 146 TFLTLMAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMVIIIAYNPKLTLLTLYIYI---LMTTSIFLTM--------- 213
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAvtyLVSALASFTVictleefgt 436

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 214 ---------------NKINALKLPTLLTSwtKTPTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISM 278
Cdd:MTH00198 437 rtptsrqrdgsfgnyNLVRRLVDLTILSR--GQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIYYL 514

                        330
                 ....*....|....*....
gi 257786484 279 LSLLGL-------FFYLRL 290
Cdd:MTH00198 515 VALFAIictcisaFYYIRI 533
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 27-292 7.86e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 69.14  E-value: 7.86e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  27 LEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITQLTHPL--------ACLLLTSAIAI 98
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGALaenptvvtAFGFVLLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  99 KLGLTPFHFWFPEVLQG-SSLTTALLLSTVMKLPPTTILLITSHSLNPTF---------LTLMAIMSIAFGGWMGLNQTQ 168
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTVFGGDFrfalglgwlLAVLALLSMLVGSLAALGQDD 294

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 169 TRKIMAFSSISHLGWMVIIIAYNPKLTLLTLYIYI----LMTTSIFLT---------MNKINAL-----KLPTLLTSWTk 230
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhaLMKGALFLAagaievtygTRRLSELsglgrRMPLTAAAFA- 373

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 257786484 231 tptlnttlmLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLAY 292
Cdd:PRK08375 374 ---------VASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 43-189 1.89e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 61.64  E-value: 1.89e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  43 HPRAVEAATKYFLVQATASALVLFSCTINAHSTGQW--DITQLTH--------PLACLLLTSAIAIKLGLTPFHFWFPEV 112
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplpltaqLLLFLAFFIAFAVKVPMFPFHTWLPDA 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 113 LQGSSLTTALLLSTVMK-----------LPpttILLITSHSLNPTFLTLmAIMSIAFGGWMGLNQTQTRKIMAFSSISHL 181
Cdd:COG1008  236 HVEAPTAGSVLLAGVLLkmggygllrfaLP---LFPEASAYFAPLLAAL-GVIGIIYGALVALAQTDLKRLIAYSSVSHM 311


                 ....*...
gi 257786484 182 GWMVIIIA 189
Cdd:COG1008  312 GFVLLGIF 319
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 27-313 1.28e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 59.34  E-value: 1.28e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  27 LEINTLSILPLIS-KSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITQLTHPL----------ACLLLTSA 95
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMAYLAVKMsenptvvakiALALFIAG 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  96 IAIKLGLTPFHFWFPEVLQG--SSLTTALLLSTVMKLPPTTILLIT--SHSLNPTFL----TLMAIMSIAFGGWMGLNQT 167
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALARVLFSiyGPAINLATVgwviIILGCLTMFVGVAMAVVQK 309

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 168 QTRKIMAFSSISHLGWMVI-----IIAYNPklTLLTLYIYILMTTSIFLTMNKInALKLPTLLTSWT------------- 229
Cdd:PRK08376 310 DVKRLLAYHSVSQIGYMLLglgvgLAALGD--PAMASYGEIALAGGIYHIVNHA-LYKALLFLTAGAviyetgtrnlnel 386

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 230 -----KTPTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQE--LIKQEMTATTTIISMLSLLGlffYLRLAYcSTITLPPSP 302
Cdd:PRK08376 387 gglarTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESsaLFNPILGVIAMIGSVLTLAS---FVKVFH-TAFFGPPSE 462

                        330
                 ....*....|.
gi 257786484 303 PNKMKQWPPKT 313
Cdd:PRK08376 463 KVMNVKEPPKP 473
ndhB CHL00049
NADH dehydrogenase subunit 2
 45-257 1.64e-09

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 58.86  E-value: 1.64e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  45 RAVEAATKYFLVQATASALVLFSCT-INAHSTGQWDI---------TQLTHPLACLL----LTSAIAIKLGLTPFHFWFP 110
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVYGFSwLYGLSGGEIELqeivnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTP 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 111 EVLQGSSLTTALLLSTVMKLP----PTTILLITSHSLNP---TFLTLMAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGW 183
Cdd:CHL00049 239 DVYEGSPTPVVAFLSVTSKVAasalATRIFDIPFYFSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 184 MVI-IIAYNPKLTLLTLYIYILmttsIFLTMNkINALKLPTLLTS-------------WTKTPTLNTTLMLTLLSLAGLP 249
Cdd:CHL00049 319 VIIgIIVGDSNDGYASMITYML----FYIFMN-LGTFACIVLFGLrtgtdnirdyaglYTKDPFLALSLALCLLSLGGIP 393


                 ....*...
gi 257786484 250 PLTGFLPK 257
Cdd:CHL00049 394 PLAGFFGK 401
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 7-204 6.42e-08

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 53.99  E-value: 6.42e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484   7 ILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATA------SALVLFSCTINAHSTGQWDI 80
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  81 TQLTHP----------LACLLLTSAIAIKLGLTPFHFWFPEV-LQGSSLTTALLLSTVMKLPPTTILLITS----HSLNP 145
Cdd:PRK08676 191 TELAAHasllspsvlgASFLFIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqSGAAE 270

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 257786484 146 TF---LTLMAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMVIIIAYNPKLTLLTLYIYIL 204
Cdd:PRK08676 271 QFsnvLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHML 332
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
44-257 1.73e-07

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 52.75  E-value: 1.73e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  44 PRAVEAATKYFLVQATASALVLF-----------SCTINAHSTGQWDITQLTHPLACLLLTSAIAIKLGLTPFHFWFPEV 112
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgssllyglsggSTQLSAIALALITSPSLGLALALVFVIAGIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 113 LQGSSLTTALLLSTVMKLPPTTI---LLITSHSLNPT----FLTLMAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMV 185
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAGFALairLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 186 IIIAYNPKLTLLTLYIYILmttsIFLTMN--KINALKLPTLLTS----------WTKTPTLNTTLMLTLLSLAGLPPLTG 253
Cdd:PRK02504 317 IGLVAGTEAGYASMVFYLL----AYLFMNlgAFACVILFSLRTGtdqisdyaglYQKDPLLTLGLSLCLLSLGGIPPLAG 392


                 ....
gi 257786484 254 FLPK 257
Cdd:PRK02504 393 FFGK 396
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 44-189 1.86e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 52.25  E-value: 1.86e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484   44 PRAVEAATKYFLVQATASALVLFSCTI----NAHSTGQWDITQLTHPLAC-----LLLTSAIAIKLGLTPFHFWFPEV-L 113
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGlyflGGGTFDLLELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  114 QGSSLTTALLLSTVMKLPPTTILLI-------TSHSLNPtFLTLMAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMVI 186
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFnlplfpdASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310


                  ...
gi 257786484  187 IIA 189
Cdd:TIGR01972 311 GIF 313
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 27-290 3.94e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 51.27  E-value: 3.94e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  27 LEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQW---DITQLTHPL--------ACLLLTSA 95
Cdd:PRK12662 139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLnmgDMFLIIQDLptnraiqiGVLFIMVG 218

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  96 IAIKLGLTPFHFWFPEVLQGS-SLTTALLLSTVMKLPPTTI-----------LLITSHSLNPTFLTLmAIMSIAFGGWMG 163
Cdd:PRK12662 219 LFIKAALFPFHKWLIQAYSEApSFISVFFSGTSTKVMIYLIirivydvfkanFVFTTLPFNNVFMIL-AALAIVFGSVLA 297

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 164 LNQTQTRKIMAFSSISHLGWMVIIIAYNPKLTLLTLYIYI----LMTTSIFLTMNKI----NALKLPTLLTSWTKTPTLN 235
Cdd:PRK12662 298 ILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsIVKSALFMVSGSIsyhfGTTKLEDCLNLWKSMPKIT 377

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 257786484 236 TTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRL 290
Cdd:PRK12662 378 LAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKI 432
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 17-292 4.08e-07

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 51.54  E-value: 4.08e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  17 SNHWMTAWAGLEINTLSILPLISKSHHpRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDIT-------QLTHP--- 86
Cdd:PRK08668 117 ANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFAdisqgliNDTSTgfa 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  87 -LACLLLTSAIAIKLGLTPFHFWFPE-----------VLQGS-SLTTALLLSTVMKLPPTTILLIT-----SHSLNPTFL 148
Cdd:PRK08668 196 lIVFLFLLAFGVAKAGIFPLHVWAPDayseapqsfsaVLSGQlSKLGAYGFLLVLYVLPGTKLFSEfgtyrGVPLFNYIL 275

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 149 TLMAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMVIIIAYNPKLT----LLTLYIYILMTTSIFLTmnkINALKLPTL 224
Cdd:PRK08668 276 AWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGfaggLFHVFNHALFKGLFFLI---FAAVIYRTG 352

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 257786484 225 LTSWT-------KTPTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLAY 292
Cdd:PRK08668 353 TTKISemgglieKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLA 427
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 44-189 1.01e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 47.12  E-value: 1.01e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  44 PRAVEAATKYFLVQATASALVLFSC----TINAHSTGQWDITQLTHP-----------LACLLltsAIAIKLGLTPFHFW 108
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIiylvVVYYNATGTFDIADLLNLplppgvqywlfLAFFI---AFAVKMPMFPLHTW 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 109 FPEVLQ-----GSSLTTALLLST--------VMKLPPTTillitSHSLNPTFLTLmAIMSIAFGGWMGLNQTQTRKIMAF 175
Cdd:PRK05846 234 LPDAHVqaptaGSVLLAGILLKMgaygllrfSLPLFPDA-----SHEFAPIIITL-GVIAIIYGALVALAQTDIKKLIAY 307

                        170
                 ....*....|....
gi 257786484 176 SSISHLGWMVIIIA 189
Cdd:PRK05846 308 SSISHMGFVTLGIF 321
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
28-302 1.05e-05

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 46.95  E-value: 1.05e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  28 EINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITQLTHPL-----------ACLLLTSAI 96
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDIHNALlvnptspviygGLLLLIFGL 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  97 AIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLPPTTILLIT-----SHSLNPTFLTLMAIMSIA---FGGWMGLNQTQ 168
Cdd:PRK06277 210 LYGSGLPPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLVIfklfgGLSYFPSAQGVLIALSVLamvFGVVMALLQTD 289

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 169 TRKIMAFSSISHLGWMVIIIAYNPKLT----LLTLYIYILMTTSIFL------TMNKINAL-KLPTLLTSwtkTPTLNTT 237
Cdd:PRK06277 290 YKRLLAYHAISQGGYVAAGLALGTPLGivagIFHAINHVIYKSALFLgagivsYRTKTSNLrKLGGLLPV---MPVVAFM 366

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 257786484 238 LMLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLAYcsTITLPPSP 302
Cdd:PRK06277 367 VLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFY--LIYLKPKP 429
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 14-186 3.24e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 45.31  E-value: 3.24e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  14 TITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFScTI----NAHstgqwdiTQLTHPLAC 89
Cdd:PRK06458 124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFG-TIlvyaNAA-------TVMGDGEMA 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  90 LLLTSAIAI----------------------KLGLTPFHFWFPE-----------VLQGSSLTTAL---------LLSTV 127
Cdd:PRK06458 196 ILWTELLKHaslldptlmklafvflligfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALyavlryyilIDAAI 275

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 257786484 128 MKLPPTTILLItshslnptfltlMAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMVI 186
Cdd:PRK06458 276 GSDFPGRLLLI------------FGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 49-189 4.93e-05

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 45.02  E-value: 4.93e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  49 AATKYFLVQATASALVLFSCTINAHSTGQ--WDITQLTH---PLACLLLTS-----AIAIKLGLTPFHFWFPEVLQGSSL 118
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLYagfliAFGVKLPIFPLHTWLPDAHGEASA 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 257786484 119 TTALLLSTVM-KLPPTTI------LLITSHSLNPTFLTLMAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMVIIIA 189
Cdd:PRK12561 218 PVSMILAGVLlKMGGYALirfnvqMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGIA 295
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 27-186 8.14e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 44.17  E-value: 8.14e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  27 LEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITQLTH--PLACLLLTSAIAIKLGLTP 104
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 105 FHFWFPEVLQGSSLTTALLLS-TVMK---LPPTTILLITSHSLNPtfLTLMAIMSIAFGGWMGLNQTQTRKIMAFSSISH 180
Cdd:PRK07234 203 SGLWLPLTHSEAEPPVSALLSgVVVKagvFPLVRCALDVPGLDLI--VRIFGVGTALLGVLFALLEKDLKRMLAFSTISQ 280


                 ....*.
gi 257786484 181 LGWMVI 186
Cdd:PRK07234 281 LGFILA 286
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
49-197 1.08e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 43.92  E-value: 1.08e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  49 AATKYFLVQATASALVL--FSCTINAHSTGQWDITQL---THPLAC-LLLTSAI----AIKLGLTPFHFWFPEVLQGSSL 118
Cdd:PRK06473 158 AATKFLLYTAISGILILvsFLGLVWLSGASSFDYEPLrshTLPLSTqLLLLAPIlvgfGIKIPLVPFHTWLPDAHVEAST 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 119 TTALLLSTVMKLPPTTILLITSHSLNPT-------FLTLMAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMVIIIAYN 191
Cdd:PRK06473 238 PVSVLLAGVLLKLGTYGLLRFGVGLFPEawvylapWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAA 317


                 ....*.
gi 257786484 192 PKLTLL 197
Cdd:PRK06473 318 TPLSIL 323
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
4-189 2.04e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 43.15  E-value: 2.04e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484   4 TMSILLGTTITITSNHW---MTAWA--GLEINTLsilpLISKSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQW 78
Cdd:PRK08168 106 LAGVLAAVHLLVLSDHLlvlIAAWAaiSLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSL 181

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  79 DITQL---------THPL--ACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTV-----MKLPPTTILLITSHS 142
Cdd:PRK08168 182 SLSALwahlaaqgaSPSLqaAALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAGVvnlggFVLIRFAPLLEQAPP 261

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 257786484 143 LNpTFLTLMAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMVIIIA 189
Cdd:PRK08168 262 AR-WLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLLECG 307
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 42-186 3.76e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 42.06  E-value: 3.76e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  42 HHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITQLTH-----------PLACLLLTSAIAIKLGLTPFHFWFP 110
Cdd:COG1009  156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAaaptilsspllTLILLLLLLGAFGKSAQFPLHFWLP 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 111 EVLQGSSLTTALLLSTVMKlpptTI---LLITSH---SLNPTFLTLMAIMSIA---FGGWMGLNQTQTRKIMAFSSISHL 181
Cdd:COG1009  236 DAMEGPTPVSALLHAATMV----KAgvyLLARLSplfALSPVWLTVVAIIGAItalFAALIALAQTDIKRVLAYSTVSQL 311


                 ....*
gi 257786484 182 GWMVI 186
Cdd:COG1009  312 GYMFL 316
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 87-301 5.10e-04

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 41.99  E-value: 5.10e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  87 LACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMkLPPTTILLITSHSL---NPTFLTLMAI---MSIAFGG 160
Cdd:MTH00020 211 LICLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATM-VTAGVFLLIRSSPLfeqAPLALIIVTIvgsLTVFFAA 289

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 161 WMGLNQTQTRKIMAFSSISHLGWMVIIIA-YNPKLTLLTLYIYILMTTSIFLT-------------MNKINALKLPTLLT 226
Cdd:MTH00020 290 TVGLVQNDLKKVIAYSTCSQLGYMVVACGlSHYSISLFHLMNHAFFKALLFLSagsvihalsdeqdMRKMGGLISFLPLT 369

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 257786484 227 swtktptlNTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLS-LLGLFFYLRLAYCSTITLPPS 301
Cdd:MTH00020 370 --------YIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSaLLTAFYSIRLIYLTFLSNTNL 437
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 86-262 5.41e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 41.87  E-value: 5.41e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  86 PLACLLLTSAI--AIKLGLtpfHFWFPEVLQGSSLTTALLLSTVMkLPPTTILLITSHSL------NPTFLTLMAIMSIA 157
Cdd:MTH00032 226 IIGILLLIGCIgkSAQLGL---HTWLPDAMEGPTPVSALIHAATM-VTAGVFLMIRSFPLfekaplTLLIITIFGALTAF 301

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 158 FGGWMGLNQTQTRKIMAFSSISHLGWMVIIIAY--NPKLTLLTLYIYILMTTSIFL---------TMNKINALKLPTLLT 226
Cdd:MTH00032 302 FAATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLsagsvihstTVDEQDMRKMGGLIH 381

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 257786484 227 SwtkTPTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQ 262
Cdd:MTH00032 382 S---IPFTYTMMLIGSFSIMGLPYLTGFYSKDLILE 414
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 44-211 8.45e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 41.11  E-value: 8.45e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  44 PRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITQL----------THPLACLLLTSAIAIKLGLTPFHFWFPEVL 113
Cdd:PRK12665 157 AARVRAGVTYVMVSMVSSLLFLIGIALVYAATGTLNMADLavrldelpsgTRTALFAVLLVAFGIKAAVFPLSFWLPDSY 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 114 -QGSSLTTAL---LLSTV--MKLPPTTILLITSHSLNpTFLTLMAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMVII 187
Cdd:PRK12665 237 pTAPAPVTAVfagLLTKVgvYAIIRTHTLLFPGGGLD-TLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFG 315

                        170       180
                 ....*....|....*....|....*...
gi 257786484 188 IAYNPKLTLLTLYIY----ILMTTSIFL 211
Cdd:PRK12665 316 IALSTVAGLSGAIYYvahhITVQTTLFL 343
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
28-309 9.59e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 40.70  E-value: 9.59e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  28 EINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSC--------TIN-AHSTGQWDITQLTHPLACL--LLTSAI 96
Cdd:PRK12663 138 EVMLIASFVLITLGQEREQLRGAIKYVVLNLIGSWLFLLGIgllygtfgTLNmAHIAMRLNDMGDTATLTTIalLFLLAF 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  97 AIKLGLTPFhFWFPEVLQGSSLTTALLLSTVMK-------LPPTTILLITSHSLNPTFLTLMAIMSIAFGGWMGLNQTQT 169
Cdd:PRK12663 218 GMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVIGALGALAYKDI 296

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 170 RKIMAFSSISHLGWMVIIIAYNPKLTLLTLYIY----ILMTTSIFLTMNKINAL----KLPTLLTSWTKTPTLNTTLMLT 241
Cdd:PRK12663 297 RRIAGYQVISSIGFILLGLALGTPAGINGAIFYlvhdMVVKTALFLIAGSLVRLtgyrSLQYLGGLYRKEPLFGALFLIL 376

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 257786484 242 LLSLAGLPPLTGFLPKWLIIQELIKQE---MTATTTIISMLSLLGLFFYLRLAYCSTITLPPSPPNKMKQW 309
Cdd:PRK12663 377 IFAIGGLPPFSGFWGKVLLVQGALDNGayiLLALMLITSLITMYSLFRIFFLAYWGDKDGEEVNFKPIPLY 447
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 42-190 1.30e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 40.58  E-value: 1.30e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  42 HHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITQLTHPLAC--------LLLTSAIAIKLGLT------PFHF 107
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghpLFLITLILIFIGAAaksaqgPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 108 WFPEVLQGSSLTTALLLSTVMkLPPTTILLITSH---SLNPTFLTLMA---IMSIAFGGWMGLNQTQTRKIMAFSSISHL 181
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATM-VKAGVYLVARIHpifSGTEAWFILVSgtgMITMVLAGFLAFRQTDIKAILAYSTISQL 314


                 ....*....
gi 257786484 182 GWMVIIIAY 190
Cdd:PRK12649 315 AYLMTMYGY 323
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
44-185 1.42e-03

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 40.26  E-value: 1.42e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  44 PRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITQL--THPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTA 121
Cdd:PRK12668 139 KAAVRAGFRYLLVHVLGGVLLLAGILLHYAETGSFAFGAIagLGGTAAWLILIGFGVNAAFPPLHAWLPDAYPEATVTGS 218

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 257786484 122 LLLS------TVMKLP---PTTILLItshslnptflTLMAIMSIaFGGWMGLNQTQTRKIMAFSSISHLGWMV 185
Cdd:PRK12668 219 VFLSafttktAVYALArafPGTELLI----------YIGAAMAV-YGVFFALLENDLRRLLSYHIVSQVGYMV 280
PRK12650 PRK12650
DUF4040 family protein;
73-257 1.59e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 40.41  E-value: 1.59e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  73 HSTGQWDITQLTHPLACLLLTSAIAiKLGLTPFHFWFPEVLQGSSLTTALL---------------LSTVMKLPPT-TIL 136
Cdd:PRK12650 196 HSDVWAEKPGLTTVVAVLIAVAAFT-KSAQFPFHFWLPEAMAAITPVSAFLhaaavvkagiylllrFSPVFHDVAVwNWL 274

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 137 LITSHslnptflTLMAIMSIAFGgwmgLNQTQTRKIMAFSSISHLGWMVIIIAYNPKLTLLTLYIYI----LMTTSIFLT 212
Cdd:PRK12650 275 LIIVG-------MITALMGAVFA----VQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTlahaLFKSSLFML 343

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 257786484 213 MNKIN----ALKLPTLLTSWTKTPTLNTTLMLTLLSLAGLPPLTGFLPK 257
Cdd:PRK12650 344 IGVVDhqagTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSK 392
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 95-209 2.58e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 39.52  E-value: 2.58e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  95 AIAIKLGLTPFHFWFPEV-LQGSSLTTALLLSTVMKLP-------PTTILLITSHSLNPTFLTlMAIMSIAFGGWMGLNQ 166
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAhVEAPVAGSVLLAGILLKLGgyglvrlSWPILPLGAQNLAPAVIA-MGIVGIVYGSFATCRQ 317

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 257786484 167 TQTRKIMAFSSISHLGwMVIIIAYNPKLTLLTLYIYILMTTSI 209
Cdd:MTH00226 318 IDVKRLVAYSSVAHMG-LVSITLVTHDIIGLTGSIFIMLAHGI 359
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 73-257 2.90e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 39.52  E-value: 2.90e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  73 HSTGQWDITQL-THPLACLLLTSAIAI-------KLGLTPFHFWFPEVLQGSSLTTALLLSTVM---------KLPPTti 135
Cdd:PRK12644 182 QAAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG-- 259

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 136 lLITSHSLNPTFLTLmAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMVIIIAYNPKLTLLT----LYIYILMTTSIFL 211
Cdd:PRK12644 260 -FADVPVWRPTVLVL-GLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAglamLLAHALFKAALFL 337

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 257786484 212 TMNKINAL-------KLPTLltsWTKTPTLNTTLMLTLLSLAGLPPLTGFLPK 257
Cdd:PRK12644 338 VVGIIDHStgtrdirKLSGL---GRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 5-283 4.81e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 38.64  E-value: 4.81e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484   5 MSILLGTTITITSNhWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVqATASALVLF--SCTINAHSTGQWD--- 79
Cdd:PRK06589 124 LTILIGVLIALSSD-LFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKI-LMISALLLFlpAVILIYTKTGNLDfvs 201

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  80 --ITQLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVM----KLPPTTILLITSHSLNPT------- 146
Cdd:PRK06589 202 ggLFSKNQSIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALLHAVIVvktgLFCIYKILLYIFGLSYLQrifaefn 281

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 147 FLTLMAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMV----IIIAYNPKLTLLTLYIYILMTTSIFLTMNKINALK-- 220
Cdd:PRK06589 282 WLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALlsafILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKke 361

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 257786484 221 --LPTLLTSWTKTPTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTaTTTIISMLSLLG 283
Cdd:PRK06589 362 dqVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQP-WLSIIVMLVVIA 425
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
98-197 6.91e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 38.15  E-value: 6.91e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  98 IKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLPPTTILLI--------TSHSLNPTFLTLMAImSIAFGGWMGLNQTQT 169
Cdd:PRK07363 217 IKIPLVPLHTWLPDAYTEASPAVAILLGGVLAKLGTYGLLRfglqlfpqTWSLVAPGLAIIGTI-SVIYGALSAIAQKDI 295

                         90       100
                 ....*....|....*....|....*...
gi 257786484 170 RKIMAFSSISHLGWMVIIIAYNPKLTLL 197
Cdd:PRK07363 296 KRMVAYSSIGHMGYILVAAAAGTQLSLL 323
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
 1-267 7.04e-03

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 38.23  E-value: 7.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484   1 LISTMSI-LLGTTITITSNHWMTAWAGLEINTLS---ILPLISKSHHPRAVeaatkyFLVQATASALVLFSCTINAHS-T 75
Cdd:PRK06459  74 LSSLYILtILGMAIVLTSDNYLLFLAGWEIMTIPsyvAIALTKKNKRPAFV------FMAFGELSTVLILAGFAWAFIiS 147

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484  76 GQWDITQLTHPLACLLLTSAIAIKLGLTPFHF--WFPEVLQGSSLTTALLLSTVMKLPP-----TTILLITSHSLNPTFL 148
Cdd:PRK06459 148 GTTNFSYLPSPVPLILASFGFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTLMGvygilKMTILTQTIPIGYFGL 227

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786484 149 TLMAI--MSIAFGGWMGLNQTQTRKIMAFSSISHLGWMVI-----IIAYNPKLT-----LLTLYIYI----LMTTSIFLT 212
Cdd:PRK06459 228 TILAIgaFSILFGALYAYVSENVKGLLAFSTIENNGAILValglyMVTKQLITSiehfsLITVILYSfahsVAKTGLFLS 307

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 257786484 213 MNKINALKLPTLltSWTKTPTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQ 267
Cdd:PRK06459 308 SGLQEKQSITYS--KKIRNRWIELGLTLLASSLSGLLPNIGGVASWLLLESLFMF 360
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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