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Conserved domains on  [gi|269791614|gb|ACZ43754|]
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hypothetical protein Tter_2872 [Thermobaculum terrenum ATCC BAA-798]

Protein Classification

helix-turn-helix domain-containing protein( domain architecture ID 10617438)

helix-turn-helix (HTH) domain-containing protein binds DNA and may function as a transcriptional regulator

Gene Ontology:  GO:0003677
PubMed:  15808743

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HTH_36 pfam13730
Helix-turn-helix domain;
29-68 2.67e-12

Helix-turn-helix domain;


:

Pssm-ID: 463970 [Multi-domain]  Cd Length: 55  Bit Score: 60.58  E-value: 2.67e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 269791614   29 DYANDHGECWPSVRTLAARMGLCERTIYKLISRAVRAGYI 68
Cdd:pfam13730  16 SYANKDGGCFPSVETLAKRLGLSRRTIQRAIKELEELGYL 55
 
Name Accession Description Interval E-value
HTH_36 pfam13730
Helix-turn-helix domain;
29-68 2.67e-12

Helix-turn-helix domain;


Pssm-ID: 463970 [Multi-domain]  Cd Length: 55  Bit Score: 60.58  E-value: 2.67e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 269791614   29 DYANDHGECWPSVRTLAARMGLCERTIYKLISRAVRAGYI 68
Cdd:pfam13730  16 SYANKDGGCFPSVETLAKRLGLSRRTIQRAIKELEELGYL 55
 
Name Accession Description Interval E-value
HTH_36 pfam13730
Helix-turn-helix domain;
29-68 2.67e-12

Helix-turn-helix domain;


Pssm-ID: 463970 [Multi-domain]  Cd Length: 55  Bit Score: 60.58  E-value: 2.67e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 269791614   29 DYANDHGECWPSVRTLAARMGLCERTIYKLISRAVRAGYI 68
Cdd:pfam13730  16 SYANKDGGCFPSVETLAKRLGLSRRTIQRAIKELEELGYL 55
HTH_29 pfam13551
Winged helix-turn helix; This helix-turn-helix domain is often found in transferases and is ...
 34-90 8.86e-03

Winged helix-turn helix; This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.


Pssm-ID: 433301 [Multi-domain]  Cd Length: 64  Bit Score: 34.26  E-value: 8.86e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 269791614   34 HGECWPSVRTLAARMGLCERTIYKLISRAVRAGYITVVSGGGKGRSNRYRLMLEVIA 90
Cdd:pfam13551   8 LAEGVSTVSQAARLLGLSRRTVYRWLKRFNEGGLAALLDRPRSGRPRNNRLDEEQEA 64
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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