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Conserved domains on  [gi|290874176|gb|ADD65205|]
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nucleocapsid, partial [Tehran virus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Tenui_N super family cl05345
Tenuivirus/Phlebovirus nucleocapsid protein; This family consists of several Tenuivirus and ...
 1-130 1.69e-65

Tenuivirus/Phlebovirus nucleocapsid protein; This family consists of several Tenuivirus and Phlebovirus nucleocapsid proteins. These are ssRNA viruses. In crystal structures the nucleocapsid protein from the Rift Valley fever virus (RVFV) displays a ring-shaped oligomeric assembly. Electron microscopy (EM) also demonstrates that, in complex with RNA, the RVFV nucleocapsid protein forms rings in solution.


The actual alignment was detected with superfamily member pfam05733:

Pssm-ID: 368585  Cd Length: 224  Bit Score: 197.95  E-value: 1.69e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290874176    1 GAATVAQLVSVYQLKE--GNPGRDTITLSRVSAAFVPWTVQALKVLSESLPVTGTTMDTVaGVTYPRAMMHPSFAGIIDL 78
Cdd:pfam05733  78 GAEEVAELITRYGLVEsvGNNARDAITLSRVAAAFAGWTCQALKQVSAKLAVTGSTMDSS-GPDYPRWMMHPQFAGLIDE 156

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 290874176   79 ELPGRAGEAIADAHGLFMLEFSKTINPSLRTKQPNEIAATFEKPNMAAMTGR 130
Cdd:pfam05733 157 TLPKNSNNALFDAHLLYLLQFSKTINPSLRKKEKNEIVKYFTQPLVAACNSS 208
 
Name Accession Description Interval E-value
Tenui_N pfam05733
Tenuivirus/Phlebovirus nucleocapsid protein; This family consists of several Tenuivirus and ...
 1-130 1.69e-65

Tenuivirus/Phlebovirus nucleocapsid protein; This family consists of several Tenuivirus and Phlebovirus nucleocapsid proteins. These are ssRNA viruses. In crystal structures the nucleocapsid protein from the Rift Valley fever virus (RVFV) displays a ring-shaped oligomeric assembly. Electron microscopy (EM) also demonstrates that, in complex with RNA, the RVFV nucleocapsid protein forms rings in solution.


Pssm-ID: 368585  Cd Length: 224  Bit Score: 197.95  E-value: 1.69e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290874176    1 GAATVAQLVSVYQLKE--GNPGRDTITLSRVSAAFVPWTVQALKVLSESLPVTGTTMDTVaGVTYPRAMMHPSFAGIIDL 78
Cdd:pfam05733  78 GAEEVAELITRYGLVEsvGNNARDAITLSRVAAAFAGWTCQALKQVSAKLAVTGSTMDSS-GPDYPRWMMHPQFAGLIDE 156

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 290874176   79 ELPGRAGEAIADAHGLFMLEFSKTINPSLRTKQPNEIAATFEKPNMAAMTGR 130
Cdd:pfam05733 157 TLPKNSNNALFDAHLLYLLQFSKTINPSLRKKEKNEIVKYFTQPLVAACNSS 208
 
Name Accession Description Interval E-value
Tenui_N pfam05733
Tenuivirus/Phlebovirus nucleocapsid protein; This family consists of several Tenuivirus and ...
 1-130 1.69e-65

Tenuivirus/Phlebovirus nucleocapsid protein; This family consists of several Tenuivirus and Phlebovirus nucleocapsid proteins. These are ssRNA viruses. In crystal structures the nucleocapsid protein from the Rift Valley fever virus (RVFV) displays a ring-shaped oligomeric assembly. Electron microscopy (EM) also demonstrates that, in complex with RNA, the RVFV nucleocapsid protein forms rings in solution.


Pssm-ID: 368585  Cd Length: 224  Bit Score: 197.95  E-value: 1.69e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290874176    1 GAATVAQLVSVYQLKE--GNPGRDTITLSRVSAAFVPWTVQALKVLSESLPVTGTTMDTVaGVTYPRAMMHPSFAGIIDL 78
Cdd:pfam05733  78 GAEEVAELITRYGLVEsvGNNARDAITLSRVAAAFAGWTCQALKQVSAKLAVTGSTMDSS-GPDYPRWMMHPQFAGLIDE 156

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 290874176   79 ELPGRAGEAIADAHGLFMLEFSKTINPSLRTKQPNEIAATFEKPNMAAMTGR 130
Cdd:pfam05733 157 TLPKNSNNALFDAHLLYLLQFSKTINPSLRKKEKNEIVKYFTQPLVAACNSS 208
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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