|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
1.28e-150 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 427.73 E-value: 1.28e-150
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 1 MNPITLLLIMITIFAGTLLTMVSSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTILLNATY 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 81 SGQWNITNTHNQFTPITITIALSMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQIHPWMNLNILLLIALL 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSLTMLNLLIYLALTIVMFTTLNLNTSTTVLTLSNLWNKTPMI 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 241 TLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNSNIIMVMIMAIMALLNLYFYMRLIYNTFLTLFPTFNNMKMKWQFQTT 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
|
330 340
....*....|....*....|....*..
gi 294997826 321 NQTRLMPPLIILSTLSLPLAPTFSTLY 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-268 |
4.22e-20 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 88.91 E-value: 4.22e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 23 SSHWLLMWIGLEINMLAIIP-ILMKNYKPRSTEAATKYFLMQATASMLLMFTILLNATYSGQWNITNTHNQFTP------ 95
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGglnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 96 -----ITITIALSMKLGVTPFHFWVPEVTQGISLLAGMLLL-TWQKLAPISIMLQIHPWMNLNILLLIALLSILV----- 164
Cdd:pfam00361 81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIismll 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 165 GGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSLTMLNLLIYLALTIVMFTTLNLNTSTTVLT---------LSNLWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRrvhtrnirdYGGLAK 240
|
250 260 270
....*....|....*....|....*....|...
gi 294997826 236 KTPMITLTTMIALLSLGGLPPLTGFLPKWMIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
7-215 |
1.64e-14 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 74.21 E-value: 1.64e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 7 LLIMITIFAgtLLTMVSS-HWLLMWIGLEINMLAI-IPILMKNYKPRSTEAATKYFLMQATASMLLMFTILLNATYSGQW 84
Cdd:TIGR01770 106 ILLLFALLG--IFLLVSSnDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSL 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 85 NITNTHNQFTPITITI------------ALSMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQI------- 145
Cdd:TIGR01770 184 NFEDLLLFLSNGMLNIsllllgivlilvGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyilfg 263
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 294997826 146 -HPWmNLNILLLIALLSILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSLTMLNLLIYLALTIVM 215
Cdd:TIGR01770 264 fSEA-WQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALM 333
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
7-302 |
3.25e-14 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 73.23 E-value: 3.25e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 7 LLIMITIFAGTLLTMvSSHWLLMWIGLEINMLAI-IPILMKNYKPRSTEAATKYFLMQATASMLLMFTILLNATYSGQWN 85
Cdd:COG1007 106 ALLLFATLGMMLMAS-ANDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLN 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 86 ITN-----THNQFTPITITIALSM-------KLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQIHPWMNLNI 153
Cdd:COG1007 185 LAGiaaalAAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPGL 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 154 LLLIALLSI-------LVGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSL----TMLNLLIYLALTIVMFTTLNLN 222
Cdd:COG1007 265 AADWQLLLAvlavlsmTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVILLL 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 223 --TSTTVLTLSN---LWNKTPMITLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNSNIIMVMIMAIMALLNLYFYMRLI 297
Cdd:COG1007 345 srKGGEAEEIEDlagLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVV 424
|
....*
gi 294997826 298 YNTFL 302
Cdd:COG1007 425 KAMYF 429
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
1.28e-150 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 427.73 E-value: 1.28e-150
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 1 MNPITLLLIMITIFAGTLLTMVSSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTILLNATY 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 81 SGQWNITNTHNQFTPITITIALSMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQIHPWMNLNILLLIALL 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSLTMLNLLIYLALTIVMFTTLNLNTSTTVLTLSNLWNKTPMI 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 241 TLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNSNIIMVMIMAIMALLNLYFYMRLIYNTFLTLFPTFNNMKMKWQFQTT 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
|
330 340
....*....|....*....|....*..
gi 294997826 321 NQTRLMPPLIILSTLSLPLAPTFSTLY 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
4.58e-104 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 309.43 E-value: 4.58e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 1 MNPITLLLIMITIFAGTLLTMVSSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTILLNATY 80
Cdd:MTH00135 1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 81 SGQWNITNTHNQFTPITITIALSMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQIHPwMNLNILLLIALL 160
Cdd:MTH00135 81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAP-TNPTLLITLGLT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSLTMLNLLIYLALTIVMFTTLNLNTSTTVLTLSNLWNKTPMI 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 241 TLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNSNIIMVMIMAIMALLNLYFYMRLIYNTFLTLFPTFNNMKMKWQFQTT 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319
|
330 340
....*....|....*....|....*.
gi 294997826 321 NQTRLMPPLIILSTLSLPLAPTFSTL 346
Cdd:MTH00135 320 QLTLPLAISTTATLMLLPLTPAILAL 345
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
1.78e-103 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 307.90 E-value: 1.78e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 1 MNPITLLLIMITIFAGTLLTMVSSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTILLNATY 80
Cdd:MTH00112 1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 81 SGQWNITNTHNQFTPITITIALSMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQIHPWMNLNILLLIALL 160
Cdd:MTH00112 81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSLTMLNLLIYLALTIVMFTTLNLNTSTTVLTLSNLWNKTPMI 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 241 TLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNSNIIMVMIMAIMALLNLYFYMRLIYNTFLTLFPTFNNMKMKWQFqTT 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRT-KP 319
|
330 340
....*....|....*....|....*.
gi 294997826 321 NQTRLMPPLIILSTLSLPLAPTFSTL 346
Cdd:MTH00112 320 KKNTLTATLTTLSTLLLPLSPMILTI 345
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
9.28e-103 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 306.08 E-value: 9.28e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 1 MNPITLLLIMITIFAGTLLTMVSSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTILLNATY 80
Cdd:MTH00070 1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 81 SGQWNITNTHNQFTPITITIALSMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQIHPWMNLNILLLIALL 160
Cdd:MTH00070 81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSLTMLNLLIYLALTIVMFTTLNLNTSTTVLTLSNLWNKTPMI 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 241 TLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNSNIIMVMIMAIMALLNLYFYMRLIYNTFLTLFPTFNNMKMKWQFQTT 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320
|
330 340
....*....|....*....|....*..
gi 294997826 321 NQTrLMPPLIILSTLSLPLAPTFSTLY 347
Cdd:MTH00070 321 TNN-LLSLTIILSLMLLPITPTILNLF 346
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
3.33e-74 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 232.94 E-value: 3.33e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 1 MNPITLLLIMITIFAGTLLTMVSSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTILLNATY 80
Cdd:MTH00200 1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 81 SGQWNITNTHNQFTPITITIALSMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQIHPWMNLNILLLIALL 160
Cdd:MTH00200 81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSLTMLNLLIYLALTIVMFTTLNLNTSTTVLTLSNLWNKTPMI 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 241 TLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNSNIIMVMIMAIMALLNLYFYMRLIYNTFLTLFPTFNNMKMKWQfQTT 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWR-TKS 319
|
330 340
....*....|....*....|....*.
gi 294997826 321 NQTRLMPPLIILSTLSLPLAPTFSTL 346
Cdd:MTH00200 320 NSNLLVGLLLLLSILGLPLTPQLLFL 345
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
1-339 |
3.56e-73 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 230.20 E-value: 3.56e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 1 MNPITLLLIMITIFAGTLLTMVSSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTILLNATY 80
Cdd:MTH00041 1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 81 SGQWNITNTHNQFTPITITIALSMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQIHPWMNLNILLLIALL 160
Cdd:MTH00041 81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSLTMLNLLIYLALTIVMFTTLNLNTSTTVLTLSNLWNKTPMI 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 241 TLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNSNIIMVMIMAIMALLNLYFYMRLIYNTFLTLFPT-----FNNMKMKW 315
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQhsislFSWRNSGN 320
|
330 340
....*....|....*....|....
gi 294997826 316 QFQTTNQTRLMPPLIILSTLSLPL 339
Cdd:MTH00041 321 ITVYGVILSILSSISILGLLLIPL 344
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
1-315 |
2.39e-45 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 157.74 E-value: 2.39e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 1 MNPITLLLIMITIFaGTLLTMVSSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTILLNATY 80
Cdd:MTH00144 2 SSPSNLLFLFLMVM-GTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 81 SGQWnitnthnqFTPITITIALSMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQIHPWMNLNILLLIA-L 159
Cdd:MTH00144 81 SFSW--------FSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVIsV 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 160 LSILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSLTMLNLLIYLALTIVMFTTLNLNTSTTVLTLSNLwNKTPM 239
Cdd:MTH00144 153 LSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSL-KPSYK 231
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 294997826 240 ITLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNSNIIMVMIMAIMALLNLYFYMRLIYNTFLTLFPTFNNMKMKW 315
Cdd:MTH00144 232 TGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKV 307
|
|
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-343 |
4.46e-45 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 156.91 E-value: 4.46e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 1 MNPITLLLIMITIFAGTLLTMVSSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTILLNAty 80
Cdd:MTH00160 2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNM-- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 81 sgqwNITNTHNQFTPITITIALSMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQIhpwMNLNILLLIALL 160
Cdd:MTH00160 80 ----LNLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSLTMLNLLIYLALTIVMFTTLNLNTSTTVLTLSNLWNKTPMI 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 241 TLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNSNIIMVMIMAIMALLNLYFYMRLIYNTFLTlfpTFNNMKMKWQFQTT 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLML---NYNKNKWNLKKKKN 309
|
330 340
....*....|....*....|...
gi 294997826 321 NQTRLMPPLIILSTLSLPLAPTF 343
Cdd:MTH00160 310 KFSLILNFLSFISLFGLILSSLL 332
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
5-312 |
1.20e-41 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 148.00 E-value: 1.20e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 5 TLLLIMITIFAGTLLTMVSSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTILLNATYSGQW 84
Cdd:MTH00011 7 TMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSLL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 85 NItnthnqFTPITITIALSMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQIHPWMNLNILLLIALLSILV 164
Cdd:MTH00011 87 KN------ITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 165 GGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSLTMLNLLIYLALTIVMFTTLNLNTSTTVLTLSNLWNKTPMITLTT 244
Cdd:MTH00011 161 GGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSL 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 294997826 245 MIALLSLGGLPPLTGFLPKWMIIQELSKNSNIIMVMIMAIMALLNLYFYMRLIYNtFLTLFPTFNNMK 312
Cdd:MTH00011 241 FIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN-FMYLSPTFSSLK 307
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
8-302 |
7.17e-33 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 124.40 E-value: 7.17e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 8 LIMITIFAGTLLTMVSSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTILLnaTYSGQWNIT 87
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSL--SFSNLYLSL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 88 NTHnqftpITITIALSMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQIHPwmNLNILLLIALLSILVGGW 167
Cdd:MTH00197 80 LSV-----VLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGI 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 168 GGLNQTQLRKILAYSSIAHMGWMMAILMFCPSLTMLNLLIYLALTIVMFTTLNLNTSTTVLTLSNLWNKTPMITLTTMIA 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 294997826 248 LLSLGGLPPLTGFLPKWMIIQELSKNSNIIMVMIMAIMALLNLYFYMRLIYNTFL 302
Cdd:MTH00197 233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI 287
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
7-267 |
2.86e-21 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 94.31 E-value: 2.86e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 7 LLIMITIFaGTLLTMVSSHWLLMWIGLEINMLAI-IPILMKNYKPRSTEAATKYFLMQATASMLLMFTILLNATYSGQWN 85
Cdd:MTH00199 101 ILILIVAL-GSLLLVSSINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETS 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 86 I----TNTHNQFTPITITIALSMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQIHPWMNLNILLLIALLS 161
Cdd:MTH00199 180 IqginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLSII 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 162 ilVGGWGGLNQTQLRKILAYSSIAHMG---WMMAILMFCP-SLTMLNLLIYLALTIVMFTTLNLNTST--TVLTLSNLWN 235
Cdd:MTH00199 260 --YGAIGALNQTKIKRLLAYSGIGHMGfilFGVAIGSFESiQASLIYMIIYVIMSICSFSIILSLKLTkgLIVEVSGLSR 337
|
250 260 270
....*....|....*....|....*....|..
gi 294997826 236 KTPMITLTTMIALLSLGGLPPLTGFLPKWMII 267
Cdd:MTH00199 338 KNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-268 |
4.22e-20 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 88.91 E-value: 4.22e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 23 SSHWLLMWIGLEINMLAIIP-ILMKNYKPRSTEAATKYFLMQATASMLLMFTILLNATYSGQWNITNTHNQFTP------ 95
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGglnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 96 -----ITITIALSMKLGVTPFHFWVPEVTQGISLLAGMLLL-TWQKLAPISIMLQIHPWMNLNILLLIALLSILV----- 164
Cdd:pfam00361 81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIismll 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 165 GGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSLTMLNLLIYLALTIVMFTTLNLNTSTTVLT---------LSNLWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRrvhtrnirdYGGLAK 240
|
250 260 270
....*....|....*....|....*....|...
gi 294997826 236 KTPMITLTTMIALLSLGGLPPLTGFLPKWMIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
16-267 |
4.63e-18 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 83.93 E-value: 4.63e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 16 GTLLTMVSSHWLLMWIGLEINMLAI-IPILMKNYKPRSTEAATKYFLMQATASMLLMFTILLNATYSGQWNITNTHNQFT 94
Cdd:MTH00196 5 GILCLISSSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLSYINLVLN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 95 P-------------ITITIALSMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQIHPwmNLNILLLIALLS 161
Cdd:MTH00196 85 SgqsfssvsvpigyLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGL--NVNILLIGGLFS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 162 ILVGGWGGLNQTQLRKILAYSSIAHMG---WMMAILMFC---PSLTMLNLLIYLALTIVMFTTLNLNTSTTVLTLSNLWN 235
Cdd:MTH00196 163 LFVGAIGALNQTKIKRLLAYSGIGHMGfvlWGIEIGSFEsiqASLVYLFIYIIMSICVFSIILALNVYKNLIIEFSGLSR 242
|
250 260 270
....*....|....*....|....*....|..
gi 294997826 236 KTPMITLTTMIALLSLGGLPPLTGFLPKWMII 267
Cdd:MTH00196 243 RLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
5-215 |
4.74e-15 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 75.63 E-value: 4.74e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 5 TLLLIMItifAGTLLTMVSSHWLLMWIGLEINMLAI-IPILMKNYKPRSTEAATKYFLMQATASMLLMFTILLNATYSGQ 83
Cdd:PRK05777 107 LLVLFAL---LGMMVMVSANDLLTLFLGLELLSLPLyALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGS 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 84 WNITNTHNQFTPIT------------ITIALSMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQI------ 145
Cdd:PRK05777 184 LSFAGIAKALADGSgnsllllfglvfLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLlvvafg 263
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 294997826 146 -HPWMNLNILLLIALLSILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSLTMLNLLIYLALTIVM 215
Cdd:PRK05777 264 gLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFM 334
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
7-215 |
1.64e-14 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 74.21 E-value: 1.64e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 7 LLIMITIFAgtLLTMVSS-HWLLMWIGLEINMLAI-IPILMKNYKPRSTEAATKYFLMQATASMLLMFTILLNATYSGQW 84
Cdd:TIGR01770 106 ILLLFALLG--IFLLVSSnDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSL 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 85 NITNTHNQFTPITITI------------ALSMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQI------- 145
Cdd:TIGR01770 184 NFEDLLLFLSNGMLNIsllllgivlilvGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyilfg 263
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 294997826 146 -HPWmNLNILLLIALLSILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSLTMLNLLIYLALTIVM 215
Cdd:TIGR01770 264 fSEA-WQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALM 333
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
7-302 |
3.25e-14 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 73.23 E-value: 3.25e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 7 LLIMITIFAGTLLTMvSSHWLLMWIGLEINMLAI-IPILMKNYKPRSTEAATKYFLMQATASMLLMFTILLNATYSGQWN 85
Cdd:COG1007 106 ALLLFATLGMMLMAS-ANDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLN 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 86 ITN-----THNQFTPITITIALSM-------KLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQIHPWMNLNI 153
Cdd:COG1007 185 LAGiaaalAAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPGL 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 154 LLLIALLSI-------LVGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSL----TMLNLLIYLALTIVMFTTLNLN 222
Cdd:COG1007 265 AADWQLLLAvlavlsmTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVILLL 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 223 --TSTTVLTLSN---LWNKTPMITLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNSNIIMVMIMAIMALLNLYFYMRLI 297
Cdd:COG1007 345 srKGGEAEEIEDlagLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVV 424
|
....*
gi 294997826 298 YNTFL 302
Cdd:COG1007 425 KAMYF 429
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
3-191 |
1.71e-09 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 59.10 E-value: 1.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 3 PITLLLIMITIFAGTLLTMVSSHWLLMWIGLEINMLAIIPILMKNYKPRST---------EAATKYFLMQATASMLLMFT 73
Cdd:MTH00198 187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 74 ILLNATYSGQ--------------WNITNTHNQFTPITITIALSMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLapI 139
Cdd:MTH00198 267 CALYFGFTGNegmlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--T 344
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 294997826 140 SIMLQIHPWMNLNILLLIALLSILVGGWGGLNQTQLRKILAYSSIAHMGWMM 191
Cdd:MTH00198 345 VYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIL 396
|
|
| NADH_dehy_S2_C |
pfam06444 |
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ... |
291-341 |
2.28e-09 |
|
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.
Pssm-ID: 461914 [Multi-domain] Cd Length: 51 Bit Score: 52.65 E-value: 2.28e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 294997826 291 YFYMRLIYNTFLTLFPTFNNMKMKWQFQTTNQTRLMPPLIILSTLSLPLAP 341
Cdd:pfam06444 1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
5-300 |
4.56e-09 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 57.46 E-value: 4.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 5 TLLLIMItifAGTLLTMVSSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTILLNATYSGQW 84
Cdd:COG0651 111 PLFLLLL---AGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTL 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 85 NITNTHNQFTPIT----------ITIALSMKLGVTPFHFWVPE-----------VTQGISLLAGM--LLLTWQKLAPISI 141
Cdd:COG0651 188 NMADLAARLAELDpglllaafalLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADP 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 142 MLQIHPWMnlnilLLIALLSILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSLTMLNLLIYLA----LTIVMF- 216
Cdd:COG0651 268 ALFLGTLL-----LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLnhalAKALLFl 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 217 ---TTLNLNTSTTVLTLSNLWNKTPMITLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNSNIIMVMIMAIMALLNLYFY 293
Cdd:COG0651 343 aagAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYF 422
|
....*..
gi 294997826 294 MRLIYNT 300
Cdd:COG0651 423 VRIFGRA 429
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
9-242 |
1.66e-05 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 46.58 E-value: 1.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 9 IMITIFAGTLLTMVSSHWLLMWIGLEinMLAIIPILMKNY---KPRSTEAATKYFLMQATASMLLMFTI-LLNATYSGQW 84
Cdd:PRK02504 115 ILLTATLGGMFLSGATELVMIFISLE--TLSIASYLLTGYmkrDPRSNEAALKYLLIGAASSAIFLYGSsLLYGLSGGST 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 85 NITNTHNQFT---PITITIAL-------SMKLGVTPFHFWVPEVTQGISLLAGMLLLTWQKLA----PISIMLQIHPWMN 150
Cdd:PRK02504 193 QLSAIALALItspSLGLALALvfviagiAFKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFD 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 151 ---LNILLLIALLSILVGGWGGLNQTQLRKILAYSSIAHMGWMMaILMFCP-----SLTMLNLLIYLALTIVMFTTLNLN 222
Cdd:PRK02504 273 eqwKLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM-IGLVAGteagyASMVFYLLAYLFMNLGAFACVILF 351
|
250 260
....*....|....*....|....
gi 294997826 223 TSTT----VLTLSNLWNKTPMITL 242
Cdd:PRK02504 352 SLRTgtdqISDYAGLYQKDPLLTL 375
|
|
| PRK12561 |
PRK12561 |
NAD(P)H-quinone oxidoreductase subunit 4; Provisional |
55-191 |
4.66e-05 |
|
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Pssm-ID: 237137 [Multi-domain] Cd Length: 504 Bit Score: 45.02 E-value: 4.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 55 AATKYFLMQATASMLLMFTILLNATYSGQ--WNITNTHNQFTPITIT--------IALSMKLGVTPFHFWVP----EVTQ 120
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAKSYPLALElllyagflIAFGVKLPIFPLHTWLPdahgEASA 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 121 GIS-LLAGMLLL----------------TWQKLAPISIMLQIhpwMNLNillliallsilvggWGGLN---QTQLRKILA 180
Cdd:PRK12561 218 PVSmILAGVLLKmggyalirfnvqmlpdAHVYFAPALAILGV---VNII--------------YGALNafaQDNVKRRLA 280
|
170
....*....|.
gi 294997826 181 YSSIAHMGWMM 191
Cdd:PRK12561 281 YSSVSHMGFVL 291
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
49-191 |
6.33e-05 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 44.55 E-value: 6.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 49 KPRSTEAATKYFLMQATASMLLMFTILLNATYSG---------QWNITNTHNQFTPITITIALSMKLGVTPFHFWVPEV- 118
Cdd:TIGR01972 151 GPNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGgtfdllellNLPLPFGVQTWLFLAFFIAFAVKVPLFPLHTWLPDAh 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 119 ----TQGISLLAGMLLltwqKLAPISIM---LQIHP--WMNLNILLLIALLSILV-GGWGGLNQTQLRKILAYSSIAHMG 188
Cdd:TIGR01972 231 veapTAGSVILAGVLL----KMGTYGFLrfnLPLFPdaSLYFAPVLAALGVIAIIyGALIALAQTDIKRLIAYSSISHMG 306
|
...
gi 294997826 189 WMM 191
Cdd:TIGR01972 307 FVL 309
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
55-192 |
6.38e-05 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 44.69 E-value: 6.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 55 AATKYFLMQATASMLLMFTILLNATYSGQW--NITNTHNQFTPIT--------ITIALSMKLGVTPFHFWVPEV-----T 119
Cdd:COG1008 162 AAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAAPLPLTaqlllflaFFIAFAVKVPMFPFHTWLPDAhveapT 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 120 QGISLLAGMLL----------------LTWQKLAPISIMLQIhpwmnlnilllialLSILVGGWGGLNQTQLRKILAYSS 183
Cdd:COG1008 242 AGSVLLAGVLLkmggygllrfalplfpEASAYFAPLLAALGV--------------IGIIYGALVALAQTDLKRLIAYSS 307
|
....*....
gi 294997826 184 IAHMGWMMA 192
Cdd:COG1008 308 VSHMGFVLL 316
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
5-191 |
3.54e-04 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 42.39 E-value: 3.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 5 TLLLIMItifAGTLLTMVSSHWLLMWIGLEINMLAIIPIL-MKNYKPRSTEAATKYFLMQATASMLLMFTIllnATYSGQ 83
Cdd:PRK08376 125 TLILLLE---LGMLGMAITGDLFNFFVFLEIMSIASYALVaFRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQ 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294997826 84 WNITN-----THNQFTPITITI--------ALSMKLGVTPFHFWVPEV-TQGISLLAGMLLLTWQ----KLAPISIML-- 143
Cdd:PRK08376 199 YGTLNmaylaVKMSENPTVVAKialalfiaGLAMKSGAVPVHMWLPDAyPAAPSSISAMLLVIKQaglyALARVLFSIyg 278
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 294997826 144 -QIHPWMNLNILLLIALLSILVGGWGGLNQTQLRKILAYSSIAHMGWMM 191
Cdd:PRK08376 279 pAINLATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYML 327
|
|
| |
