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Conserved domains on  [gi|298161534|gb|ADI59088|]
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nonstructural protein 2, partial [Equine arteritis virus]

Protein Classification

Peptidase_C33 and Nsp2_AV domain-containing protein( domain architecture ID 11650303)

Peptidase_C33 and Nsp2_AV domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Nsp2_AV pfam14755
Nsp2, transmembrane domain; This domain is found in Nsp2 protein of the RNA-arteriviruses, ...
 101-253 1.07e-93

Nsp2, transmembrane domain; This domain is found in Nsp2 protein of the RNA-arteriviruses, such as porcine arterivirus PRRSV and equine arterivirus EAV, which is a tetraspanning transmembrane protein. This domain resides adjacent to the peptidase C33 catalytic domain of Nsp2.


:

Pssm-ID: 373271 [Multi-domain]  Cd Length: 148  Bit Score: 283.41  E-value: 1.07e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161534  101 GPPPAPVSASVLDHILEAATFGNVRVVATEEQQRPVPAPRARHSVSPPGDVKDTATVPPVPKPRTKLAKPSPVQAPTPAP 180
Cdd:pfam14755   1 GPPPAPVSASVLDHILEAATFGNVRVVATEEQQRPVPAPRTRPSASSSGDVKDPATVPPVPKPRTKLAKPSPTQAPTPAP 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 298161534  181 RTQPQDAvhsglPKPEPPTGTAAAPASAPRWRVAKTVYSSAERIRTELIHRAQSIGDSLVQALPLKAPAVQRY 253
Cdd:pfam14755  81 RTRLQDA-----SKQEPPVGTAAAPASAPKWRVAKTVYSSAERIRTELVQRARSIGDVLVQALPLKTPAVQRY 148
Peptidase_C33 super family cl05135
Equine arterivirus Nsp2-type cysteine proteinase; Corresponds to Merops family C33. These ...
 1-97 1.12e-13

Equine arterivirus Nsp2-type cysteine proteinase; Corresponds to Merops family C33. These peptidases are involved in viral polyprotein processing in replication.


The actual alignment was detected with superfamily member pfam05412:

Pssm-ID: 114153  Cd Length: 108  Bit Score: 67.25  E-value: 1.12e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161534    1 GYNPPGDGACGYRCLAFMNGATAVSAGCS--------SDLWCDDELAYRVFQLSpTFTVTIPGGRVCPNARYVMICDKQH 72
Cdd:pfam05412   1 GYSPPGDGACGWHCISAIANRMFNDKFTTtltecsrpSDDWASDQDLVQAIQTL-RLPATLDRNGACPSAKYKLKLVGQH 79

                          90       100
                  ....*....|....*....|....*.
gi 298161534   73 WRVKRAKGVGL-CLDEKCFRGTCDCQ 97
Cdd:pfam05412  80 WTVTVRKGMAPgLLSPECVRGVCGHE 105
 
Name Accession Description Interval E-value
Nsp2_AV pfam14755
Nsp2, transmembrane domain; This domain is found in Nsp2 protein of the RNA-arteriviruses, ...
 101-253 1.07e-93

Nsp2, transmembrane domain; This domain is found in Nsp2 protein of the RNA-arteriviruses, such as porcine arterivirus PRRSV and equine arterivirus EAV, which is a tetraspanning transmembrane protein. This domain resides adjacent to the peptidase C33 catalytic domain of Nsp2.


Pssm-ID: 373271 [Multi-domain]  Cd Length: 148  Bit Score: 283.41  E-value: 1.07e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161534  101 GPPPAPVSASVLDHILEAATFGNVRVVATEEQQRPVPAPRARHSVSPPGDVKDTATVPPVPKPRTKLAKPSPVQAPTPAP 180
Cdd:pfam14755   1 GPPPAPVSASVLDHILEAATFGNVRVVATEEQQRPVPAPRTRPSASSSGDVKDPATVPPVPKPRTKLAKPSPTQAPTPAP 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 298161534  181 RTQPQDAvhsglPKPEPPTGTAAAPASAPRWRVAKTVYSSAERIRTELIHRAQSIGDSLVQALPLKAPAVQRY 253
Cdd:pfam14755  81 RTRLQDA-----SKQEPPVGTAAAPASAPKWRVAKTVYSSAERIRTELVQRARSIGDVLVQALPLKTPAVQRY 148
Peptidase_C33 pfam05412
Equine arterivirus Nsp2-type cysteine proteinase; Corresponds to Merops family C33. These ...
 1-97 1.12e-13

Equine arterivirus Nsp2-type cysteine proteinase; Corresponds to Merops family C33. These peptidases are involved in viral polyprotein processing in replication.


Pssm-ID: 114153  Cd Length: 108  Bit Score: 67.25  E-value: 1.12e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161534    1 GYNPPGDGACGYRCLAFMNGATAVSAGCS--------SDLWCDDELAYRVFQLSpTFTVTIPGGRVCPNARYVMICDKQH 72
Cdd:pfam05412   1 GYSPPGDGACGWHCISAIANRMFNDKFTTtltecsrpSDDWASDQDLVQAIQTL-RLPATLDRNGACPSAKYKLKLVGQH 79

                          90       100
                  ....*....|....*....|....*.
gi 298161534   73 WRVKRAKGVGL-CLDEKCFRGTCDCQ 97
Cdd:pfam05412  80 WTVTVRKGMAPgLLSPECVRGVCGHE 105
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 98-209 4.07e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.52  E-value: 4.07e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161534  98 RRSGPPPAPVSASvldhilEAATFGNVRVVATEEQQRPVPAPRARHSvsPPGDVKDTATVPPVPKPRTKLAKPSPVQAPT 177
Cdd:PRK07764 400 SAAAAAPAAAPAP------AAAAPAAAAAPAPAAAPQPAPAPAPAPA--PPSPAGNAPAGGAPSPPPAAAPSAQPAPAPA 471

                         90       100       110
                 ....*....|....*....|....*....|..
gi 298161534 178 PAPRTQPQDAVhSGLPKPEPPTGTAAAPASAP 209
Cdd:PRK07764 472 AAPEPTAAPAP-APPAAPAPAAAPAAPAAPAA 502
half-pint TIGR01645
poly-U binding splicing factor, half-pint family; The proteins represented by this model ...
 106-216 4.38e-04

poly-U binding splicing factor, half-pint family; The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.


Pssm-ID: 130706 [Multi-domain]  Cd Length: 612  Bit Score: 43.14  E-value: 4.38e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161534  106 PVSASVldhileAATFGNVRVVATEE-QQRPVPAPRARHSVSPPGDVKDTATVPPVPKPRTKLAKPSPVQAPTpAPRTQP 184
Cdd:TIGR01645 298 PAAAAV------AAAAATAKIMAAEAvAGAAVLGPRAQSPATPSSSLPTDIGNKAVVSSAKKEAEEVPPLPQA-APAVVK 370

                          90       100       110
                  ....*....|....*....|....*....|..
gi 298161534  185 qDAVHSGlPKPEPPTGTAAAPASAPRWRVAKT 216
Cdd:TIGR01645 371 -PGPMEI-PTPVPPPGLAIPSLVAPPGLVAPT 400
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 127-226 4.04e-03

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 39.83  E-value: 4.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161534 127 VATEEQQRPVPAPRARHSVSPPGDVKDTATVPPVPKPRTKLAKPSPVQAPTPAPrTQPQDAVHSGLPKPEPPTGTAAAPA 206
Cdd:COG3266  271 SLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAAAAAPAEAAAPQPTA-AKPVVTETAAPAAPAPEAAAAAAAP 349

                         90       100
                 ....*....|....*....|
gi 298161534 207 SAPrwRVAKTVYSSAERIRT 226
Cdd:COG3266  350 AAP--AVAKKLAADEQWLAS 367
 
Name Accession Description Interval E-value
Nsp2_AV pfam14755
Nsp2, transmembrane domain; This domain is found in Nsp2 protein of the RNA-arteriviruses, ...
 101-253 1.07e-93

Nsp2, transmembrane domain; This domain is found in Nsp2 protein of the RNA-arteriviruses, such as porcine arterivirus PRRSV and equine arterivirus EAV, which is a tetraspanning transmembrane protein. This domain resides adjacent to the peptidase C33 catalytic domain of Nsp2.


Pssm-ID: 373271 [Multi-domain]  Cd Length: 148  Bit Score: 283.41  E-value: 1.07e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161534  101 GPPPAPVSASVLDHILEAATFGNVRVVATEEQQRPVPAPRARHSVSPPGDVKDTATVPPVPKPRTKLAKPSPVQAPTPAP 180
Cdd:pfam14755   1 GPPPAPVSASVLDHILEAATFGNVRVVATEEQQRPVPAPRTRPSASSSGDVKDPATVPPVPKPRTKLAKPSPTQAPTPAP 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 298161534  181 RTQPQDAvhsglPKPEPPTGTAAAPASAPRWRVAKTVYSSAERIRTELIHRAQSIGDSLVQALPLKAPAVQRY 253
Cdd:pfam14755  81 RTRLQDA-----SKQEPPVGTAAAPASAPKWRVAKTVYSSAERIRTELVQRARSIGDVLVQALPLKTPAVQRY 148
Peptidase_C33 pfam05412
Equine arterivirus Nsp2-type cysteine proteinase; Corresponds to Merops family C33. These ...
 1-97 1.12e-13

Equine arterivirus Nsp2-type cysteine proteinase; Corresponds to Merops family C33. These peptidases are involved in viral polyprotein processing in replication.


Pssm-ID: 114153  Cd Length: 108  Bit Score: 67.25  E-value: 1.12e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161534    1 GYNPPGDGACGYRCLAFMNGATAVSAGCS--------SDLWCDDELAYRVFQLSpTFTVTIPGGRVCPNARYVMICDKQH 72
Cdd:pfam05412   1 GYSPPGDGACGWHCISAIANRMFNDKFTTtltecsrpSDDWASDQDLVQAIQTL-RLPATLDRNGACPSAKYKLKLVGQH 79

                          90       100
                  ....*....|....*....|....*.
gi 298161534   73 WRVKRAKGVGL-CLDEKCFRGTCDCQ 97
Cdd:pfam05412  80 WTVTVRKGMAPgLLSPECVRGVCGHE 105
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 98-209 4.07e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.52  E-value: 4.07e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161534  98 RRSGPPPAPVSASvldhilEAATFGNVRVVATEEQQRPVPAPRARHSvsPPGDVKDTATVPPVPKPRTKLAKPSPVQAPT 177
Cdd:PRK07764 400 SAAAAAPAAAPAP------AAAAPAAAAAPAPAAAPQPAPAPAPAPA--PPSPAGNAPAGGAPSPPPAAAPSAQPAPAPA 471

                         90       100       110
                 ....*....|....*....|....*....|..
gi 298161534 178 PAPRTQPQDAVhSGLPKPEPPTGTAAAPASAP 209
Cdd:PRK07764 472 AAPEPTAAPAP-APPAAPAPAAAPAAPAAPAA 502
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 102-212 9.20e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 45.12  E-value: 9.20e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161534 102 PPPAPVSASV--LDHILEAATFGNVRVVATEEQQRPVPAPRARhsvsppgdvkdTATVPPVPKPRTKLAKPSPVQAPTPA 179
Cdd:PRK14965 362 APGAPVSELLdrLEALERGAPAPPSAAWGAPTPAAPAAPPPAA-----------APPVPPAAPARPAAARPAPAPAPPAA 430

                         90       100       110
                 ....*....|....*....|....*....|...
gi 298161534 180 PrtqpqdavhsglPKPEPPTGTAAAPASAPRWR 212
Cdd:PRK14965 431 A------------APPARSADPAAAASAGDRWR 451
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 106-251 1.35e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 44.71  E-value: 1.35e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161534 106 PVSASVLDHILEAATfgnvrvVATEEQQRPVPAPRARHSVS------PPGDVKDTATVP----PVPKPRTKLAKPSPVQA 175
Cdd:PRK14951 366 PAAAAEAAAPAEKKT------PARPEAAAPAAAPVAQAAAApapaaaPAAAASAPAAPPaaapPAPVAAPAAAAPAAAPA 439

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 298161534 176 PTPAPRTQPQDAVHSGLPKPE-PPTGTAAAPASAPRWRVAKTVYSSAERIRTELIHRAQSIGDSLVQALPLKAPAVQ 251
Cdd:PRK14951 440 AAPAAVALAPAPPAQAAPETVaIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGDVWHATVQQLAAAEAITALARE 516
PRK11633 PRK11633
cell division protein DedD; Provisional
 128-209 2.04e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 43.07  E-value: 2.04e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161534 128 ATEEQQRPVPAPRARHSVSPPGDVKDTATVPPVPKPrtklaKPSPVQAPTPAPRTQPQDAVHsglPKPEPPTGTAAAPAS 207
Cdd:PRK11633  72 AEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPP-----KPKPVEKPKPKPKPQQKVEAP---PAPKPEPKPVVEEKA 143


                 ..
gi 298161534 208 AP 209
Cdd:PRK11633 144 AP 145
PHA03378 PHA03378
EBNA-3B; Provisional
 98-209 2.04e-04

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 44.29  E-value: 2.04e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161534  98 RRSGPPPAPVSASVLDHILEAATFGNVRVVATEEQ-QRPVPAP-RARHSVSPPGDVKDTATVP-PVPKPRTKLAKPSPVQ 174
Cdd:PHA03378 699 RAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRaRPPAAAPgRARPPAAAPGRARPPAAAPgRARPPAAAPGAPTPQP 778

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 298161534 175 APT--PAPRTQPQDAVHSGLPKPEPPTGTAAAPASAP 209
Cdd:PHA03378 779 PPQapPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAP 815
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
102-211 2.31e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 44.10  E-value: 2.31e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161534 102 PPPAPVSASVLDHILEAATfgnvrvvATEEQQRPVPAPRARHSVSPPGDVKDTATVPPVPKPrtklAKPSPVQAPTPAPR 181
Cdd:PRK12323 406 PAAAPAAAAAARAVAAAPA-------RRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAA----AARPAAAGPRPVAA 474

                         90       100       110
                 ....*....|....*....|....*....|
gi 298161534 182 TQPQDAvhsglPKPEPPTGTAAAPASAPRW 211
Cdd:PRK12323 475 AAAAAP-----ARAAPAAAPAPADDDPPPW 499
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 102-222 3.41e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 43.70  E-value: 3.41e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161534 102 PPPAPVSASVLDHILEAATFGNVRVVATEEQQRPVPAPrARHSVSPPGDVKDTATVPPVPKPRTKLAKPSPVQAPTPAPR 181
Cdd:PRK07994 374 SAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAP-AVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPV 452

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 298161534 182 TQPQDAVHSGLPKPEPPTgTAAAPASAPRWRVAKTVYSSAE 222
Cdd:PRK07994 453 NSALERLASVRPAPSALE-KAPAKKEAYRWKATNPVEVKKE 492
PHA03247 PHA03247
large tegument protein UL36; Provisional
 119-214 3.56e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.77  E-value: 3.56e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161534  119 ATFGNVRVVATEEQQRPVPAPRARHSVS----PPGDVKDTATVPPVPKprTKLAKPSPVQAPTPA-PRTQPQDAVHSGLP 193
Cdd:PHA03247 2690 PTVGSLTSLADPPPPPPTPEPAPHALVSatplPPGPAAARQASPALPA--APAPPAVPAGPATPGgPARPARPPTTAGPP 2767

                          90       100
                  ....*....|....*....|..
gi 298161534  194 KPEPPTGTAAAPA-SAPRWRVA 214
Cdd:PHA03247 2768 APAPPAAPAAGPPrRLTRPAVA 2789
half-pint TIGR01645
poly-U binding splicing factor, half-pint family; The proteins represented by this model ...
 106-216 4.38e-04

poly-U binding splicing factor, half-pint family; The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.


Pssm-ID: 130706 [Multi-domain]  Cd Length: 612  Bit Score: 43.14  E-value: 4.38e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161534  106 PVSASVldhileAATFGNVRVVATEE-QQRPVPAPRARHSVSPPGDVKDTATVPPVPKPRTKLAKPSPVQAPTpAPRTQP 184
Cdd:TIGR01645 298 PAAAAV------AAAAATAKIMAAEAvAGAAVLGPRAQSPATPSSSLPTDIGNKAVVSSAKKEAEEVPPLPQA-APAVVK 370

                          90       100       110
                  ....*....|....*....|....*....|..
gi 298161534  185 qDAVHSGlPKPEPPTGTAAAPASAPRWRVAKT 216
Cdd:TIGR01645 371 -PGPMEI-PTPVPPPGLAIPSLVAPPGLVAPT 400
PHA03247 PHA03247
large tegument protein UL36; Provisional
 102-209 7.92e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.62  E-value: 7.92e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161534  102 PPPAPVSASVLDHILEAATFGNVRVVATEEQQRPVPA----PRARHSVSP-----------PGDVKDTATVPPVPKPRTK 166
Cdd:PHA03247 2840 PPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAaparPPVRRLARPavsrstesfalPPDQPERPPQPQAPPPPQP 2919

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 298161534  167 LAKPSPVQAPTPAPRTQPQDAvhsglPKPEPPTGTAAAPASAP 209
Cdd:PHA03247 2920 QPQPPPPPQPQPPPPPPPRPQ-----PPLAPTTDPAGAGEPSG 2957
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 133-214 9.16e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 42.16  E-value: 9.16e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161534 133 QRPVPAPRARHSVSPPGDVKDTATVP--PVPKPRTKLAKPSPVQAPTPAPRTQPQDAV---------------HSGLPKP 195
Cdd:PRK07994 362 AAPLPEPEVPPQSAAPAASAQATAAPtaAVAPPQAPAVPPPPASAPQQAPAVPLPETTsqllaarqqlqraqgATKAKKS 441

                         90
                 ....*....|....*....
gi 298161534 196 EPPTGTAAAPASAPRWRVA 214
Cdd:PRK07994 442 EPAAASRARPVNSALERLA 460
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 128-223 9.46e-04

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 42.02  E-value: 9.46e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161534 128 ATEEQQRPVPAPRARHSVSPpgdvkDTATVPPVPKPRtklaKPSPVQAPTPAPRTQPQDAVHS---GLPKPEPPTGTAAA 204
Cdd:PHA03269  35 AATQKPDPAPAPHQAASRAP-----DPAVAPTSAASR----KPDLAQAPTPAASEKFDPAPAPhqaASRAPDPAVAPQLA 105

                         90
                 ....*....|....*....
gi 298161534 205 PASAPRWRVAKTvySSAER 223
Cdd:PHA03269 106 AAPKPDAAEAFT--SAAQA 122
PHA03378 PHA03378
EBNA-3B; Provisional
 135-210 1.55e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 41.59  E-value: 1.55e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161534 135 PVPA--PRARHSVSPPGDVKDTATVPPVPKP---RTKLAKPSPVQAPTPAPRTQPQDAVHSGLPKPEPPTGTAAAPASAP 209
Cdd:PHA03378 711 PGRAqrPAAATGRARPPAAAPGRARPPAAAPgraRPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRP 790


                 .
gi 298161534 210 R 210
Cdd:PHA03378 791 R 791
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 110-251 1.60e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 41.33  E-value: 1.60e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161534 110 SVLDHILEAATFGN----VRVVATEEQQRPVPAPRARHSVSPPGDVKDTATVPPVPKPRTKLAKPSPVQAPTPAPRTQPQ 185
Cdd:PRK14950 335 SQLDFQLRTTSYGQlpleLAVIEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPP 414

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 298161534 186 DAVHSGLP--KPEPPTGT-AAAPASAPRWRVAKTVYSSAERIRTE---LIHRAQSIGDSLVQALPLKAPAVQ 251
Cdd:PRK14950 415 RPVAPPVPhtPESAPKLTrAAIPVDEKPKYTPPAPPKEEEKALIAdgdVLEQLEAIWKQILRDVPPRSPAVQ 486
PRK14963 PRK14963
DNA polymerase III subunits gamma and tau; Provisional
 112-212 1.87e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184927 [Multi-domain]  Cd Length: 504  Bit Score: 40.98  E-value: 1.87e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161534 112 LDHILEAATFGNVRVVATEEQQRPVPAPRAR--HSVSPPGDVKDTATVPPVPkprtklAKPSPVQAPTPAPRTQPQDAVH 189
Cdd:PRK14963 335 LLHALLALGGAPSEGVAAVAPPAPAPADLTQrlNRLEKEVRSLRSAPTAAAT------AAGAPLPDFDPRPRGPPAPEPA 408

                         90       100
                 ....*....|....*....|...
gi 298161534 190 SGLPKPEPPTGTAAAPASAPRWR 212
Cdd:PRK14963 409 RSAEAPPLVAPAAAPAGLALRWR 431
PRK11901 PRK11901
hypothetical protein; Reviewed
 129-221 1.89e-03

hypothetical protein; Reviewed


Pssm-ID: 237015 [Multi-domain]  Cd Length: 327  Bit Score: 40.82  E-value: 1.89e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161534 129 TEEQQRPVPAPRARHSVSPPGDVKDT--------------------------ATVPPVPKPRTKLAKPSPVQAPTPAPRT 182
Cdd:PRK11901 127 TPTQAAPPQTPNGQQRIELPGNISDAlsqqqgqvnaasqnaqgntstlptapATVAPSKGAKVPATAETHPTPPQKPATK 206

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 298161534 183 QPQDAVHSGLPKPEPPTGTAAAPASAPrwrvAKTVYSSA 221
Cdd:PRK11901 207 KPAVNHHKTATVAVPPATSGKPKSGAA----SARALSSA 241
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
98-216 2.72e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 40.63  E-value: 2.72e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161534  98 RRSGPPPAPVSASvldhiLEAATFGNVRVVATEEQQRPVPAPRARHSVSPPGDVKDTATVPPVPKPRTKLAKPSPVQAPT 177
Cdd:PRK12323 424 ARRSPAPEALAAA-----RQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPP 498

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 298161534 178 --------PAPRTQPQDAVHSGLPK-PEPPTGTAAAPASAPRWRVAKT 216
Cdd:PRK12323 499 weelppefASPAPAQPDAAPAGWVAeSIPDPATADPDDAFETLAPAPA 546
PHA03201 PHA03201
uracil DNA glycosylase; Provisional
 134-209 3.34e-03

uracil DNA glycosylase; Provisional


Pssm-ID: 165468  Cd Length: 318  Bit Score: 39.88  E-value: 3.34e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 298161534 134 RPVPAPRARHSVSPPGDVKDTATVPPVPKPRTKLAKPSPVQAPTPAPRTQPQDAVHSGLPKPEPPTGTAAAPASAP 209
Cdd:PHA03201  13 RRPSPPRPTPPRSPDASPEETPPSPPGPGAEPPPGRAAGPAAPRRRPRGCPAGVTFSSSAPPRPPLGLDDAPAATP 88
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 132-211 3.45e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.35  E-value: 3.45e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161534 132 QQRPVPAPRARHSVSPPGDVKDTATVPPVPKPRTKLA-KPSPVQAPTPAPRTQPQDAVHSGLPKPEPPTGTAAAPASAPR 210
Cdd:PRK07764 396 AAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPApAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPE 475


                 .
gi 298161534 211 W 211
Cdd:PRK07764 476 P 476
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 127-226 4.04e-03

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 39.83  E-value: 4.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161534 127 VATEEQQRPVPAPRARHSVSPPGDVKDTATVPPVPKPRTKLAKPSPVQAPTPAPrTQPQDAVHSGLPKPEPPTGTAAAPA 206
Cdd:COG3266  271 SLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAAAAAPAEAAAPQPTA-AKPVVTETAAPAAPAPEAAAAAAAP 349

                         90       100
                 ....*....|....*....|
gi 298161534 207 SAPrwRVAKTVYSSAERIRT 226
Cdd:COG3266  350 AAP--AVAKKLAADEQWLAS 367
PHA03247 PHA03247
large tegument protein UL36; Provisional
 103-209 4.12e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.31  E-value: 4.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161534  103 PPAPVSASVLDhileAATFGNVRVVATEEQQRPVPaPRARHSVSPPgdvkdTATVPPV----------PKPRTKLAKPSP 172
Cdd:PHA03247 2741 PPAVPAGPATP----GGPARPARPPTTAGPPAPAP-PAAPAAGPPR-----RLTRPAVaslsesreslPSPWDPADPPAA 2810

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 298161534  173 VQAPTPAPRTQPQDAvhSGLPKPEPPTGTAAAPASAP 209
Cdd:PHA03247 2811 VLAPAAALPPAASPA--GPLPPPTSAQPTAPPPPPGP 2845
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
132-209 6.40e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 39.45  E-value: 6.40e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161534 132 QQRPVPAPRAR-------HSVSPPGDVKDTATVPPVPKPRTKLAKPSPVQAPTPAPRTQPQDAVHSGLPKPEPPTGTAAA 204
Cdd:PRK07003 376 VAGAVPAPGARaaaavgaSAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANA 455


                 ....*
gi 298161534 205 PASAP 209
Cdd:PRK07003 456 RASAD 460
DUF6264 pfam19779
Family of unknown function (DUF6264); This family of putative integral membrane proteins is ...
 128-214 9.45e-03

Family of unknown function (DUF6264); This family of putative integral membrane proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 179 and 218 amino acids in length.


Pssm-ID: 466182  Cd Length: 182  Bit Score: 37.63  E-value: 9.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161534  128 ATEEQQRPVPAPRARHSVSPPgdvkdtaTVPPVPKPrtklakPSPVQAPTPAPRTQPqdavhsglPKPEPPTGTAAAPAS 207
Cdd:pfam19779   8 APPGWQRAPIGDPAAAAAAAP-------PAAPAPAA------PAPPAAPAAPPAAPP--------PPGAPAPGAPAAARR 66


                  ....*...
gi 298161534  208 APRW-RVA 214
Cdd:pfam19779  67 ARRWdRIA 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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