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Conserved domains on  [gi|306486871|gb|ADM93269|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Xanthonycticebus pygmaeus]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009567)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 7.55e-65

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 192.08  E-value: 7.55e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306486871   1 MNTLIMLITNTSLASALVLVAFWLPQLNVYTEKYSPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQ 80
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 306486871  81 THMLNLMLTVTFLLILILALGLAYEWIQKGLEWQE 115
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 7.55e-65

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 192.08  E-value: 7.55e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306486871   1 MNTLIMLITNTSLASALVLVAFWLPQLNVYTEKYSPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQ 80
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 306486871  81 THMLNLMLTVTFLLILILALGLAYEWIQKGLEWQE 115
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-112 4.32e-25

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 90.56  E-value: 4.32e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306486871   18 VLVAFWLPQLNVYTEKYSPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQTHMLNLM-LTVTFLLIL 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELGWFgFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 306486871   97 ILALGLAYEWIQKGLE 112
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 4-113 2.75e-20

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 79.01  E-value: 2.75e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306486871   4 LIMLITNTSLASALVLVAFWLPQLNVYTEKYSPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAI---Q 80
Cdd:COG0838    9 LIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVvfrE 86

                         90       100       110
                 ....*....|....*....|....*....|...
gi 306486871  81 THMLNLMLTVTFllILILALGLAYEWIQKGLEW 113
Cdd:COG0838   87 LGWFGLIEMLVF--IAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 7.55e-65

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 192.08  E-value: 7.55e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306486871   1 MNTLIMLITNTSLASALVLVAFWLPQLNVYTEKYSPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQ 80
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 306486871  81 THMLNLMLTVTFLLILILALGLAYEWIQKGLEWQE 115
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 3-115 1.34e-44

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 140.51  E-value: 1.34e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306486871   3 TLIMLITNTSLASALVLVAFWLPQLNVYTEKYSPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQTH 82
Cdd:MTH00069   2 IMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLN 81

                         90       100       110
                 ....*....|....*....|....*....|...
gi 306486871  83 MLNLMLTVTFLLILILALGLAYEWIQKGLEWQE 115
Cdd:MTH00069  82 TPTNTLFWSTLILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-115 3.76e-44

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 139.67  E-value: 3.76e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306486871   1 MN--TLIMLITnTSLASALVLVAFWLPQLNVYTEKYSPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWA 78
Cdd:MTH00136   1 MNliTTILTIT-IALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWG 79

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 306486871  79 IQTHMLNLMLTVTFLLILILALGLAYEWIQKGLEWQE 115
Cdd:MTH00136  80 DQLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-113 1.51e-40

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 130.39  E-value: 1.51e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306486871   1 MNTLIMLITNTSLASALVLVAFWLPQLNVYTEKYSPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQ 80
Cdd:MTH00113   1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 306486871  81 THMLNLMLTVTFLLILILALGLAYEWIQKGLEW 113
Cdd:MTH00113  81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEW 113
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-115 2.04e-33

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 112.38  E-value: 2.04e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306486871   1 MNTLIMLITNTSLASALVLVAFWLPQLNVYTEKYSPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQ 80
Cdd:MTH00042   2 TNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATL 81

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 306486871  81 THMLNLMLTVTFLLILILALGLAYEWIQKGLEWQE 115
Cdd:MTH00042  82 ITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-113 1.96e-30

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 104.59  E-value: 1.96e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306486871   1 MNTLIMLITNTSLASA-LVLVAFWLPQLNVYTEKYSPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAI 79
Cdd:MTH00203   1 MNLIMLFFLIALLLSLiLLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSN 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 306486871  80 QTHMLNLMLTVTFllILILALGLAYEWIQKGLEW 113
Cdd:MTH00203  81 QLSSLSLLLAFLF--LILLTLGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-112 4.32e-25

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 90.56  E-value: 4.32e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306486871   18 VLVAFWLPQLNVYTEKYSPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQTHMLNLM-LTVTFLLIL 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELGWFgFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 306486871   97 ILALGLAYEWIQKGLE 112
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-113 6.93e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 90.69  E-value: 6.93e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306486871   1 MNTLIMLITNTSLASALVLVAFWLPQLNVY-TEKYSPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAI 79
Cdd:MTH00148   2 LSILLSLLFALILSPVLLLLGLVLSKRSYSdREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSL 81

                         90       100       110
                 ....*....|....*....|....*....|....
gi 306486871  80 QTHMLNLMLTVTFLLILILALGLAYEWIQKGLEW 113
Cdd:MTH00148  82 GSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDW 115
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-113 1.78e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 87.36  E-value: 1.78e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306486871   1 MNTLIMLITNTSLASALVLVAFWLPQLNVYT-EKYSPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAI 79
Cdd:MTH00202   2 LLILFMSILSILISSLLFLVSWMLSFRSLMDrEKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVL 81

                         90       100       110
                 ....*....|....*....|....*....|....
gi 306486871  80 QTHMLNLMLTVTFLLILILALGLAYEWIQKGLEW 113
Cdd:MTH00202  82 KSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDW 115
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 32-113 1.67e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 84.44  E-value: 1.67e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306486871  32 EKYSPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQTHMLNLMLTVTFLLILILALGLAYEWIQKGL 111
Cdd:MTH00161  32 EKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSNMMSWLITSSFFILILLLGLYYEWNQGAL 111


                 ..
gi 306486871 112 EW 113
Cdd:MTH00161 112 EW 113
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 4-113 2.75e-20

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 79.01  E-value: 2.75e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306486871   4 LIMLITNTSLASALVLVAFWLPQLNVYTEKYSPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAI---Q 80
Cdd:COG0838    9 LIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVvfrE 86

                         90       100       110
                 ....*....|....*....|....*....|...
gi 306486871  81 THMLNLMLTVTFllILILALGLAYEWIQKGLEW 113
Cdd:COG0838   87 LGWFGLIEMLVF--IAILLVGLIYAWKKGALEW 117
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 31-114 8.05e-19

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 75.52  E-value: 8.05e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306486871  31 TEKYSPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQTHMLNLMLT-VTFLLILILALGLAYEWIQK 109
Cdd:MTH00055  36 SEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFL--FPWCVVYNQIGLFGFwVMYLFLIILTIGLIYEWVKG 113


                 ....*
gi 306486871 110 GLEWQ 114
Cdd:MTH00055 114 GLEWE 118
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 32-113 2.69e-18

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 74.12  E-value: 2.69e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306486871  32 EKYSPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQTHMLNLMLTVTFLLILILALGLAYEWIQKGL 111
Cdd:MTH00012  34 EKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTILMTSTSKTVVYTSILFLLILVIGLIHEWREGSL 113


                 ..
gi 306486871 112 EW 113
Cdd:MTH00012 114 DW 115
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 4-114 1.38e-17

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 72.20  E-value: 1.38e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306486871   4 LIMLITNTSLASALVLVAFWLPQLNVYTEKYSPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQTHM 83
Cdd:PRK06602  12 LIFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWAVSFRE 89

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 306486871  84 LN-----------LMLTVTFllililalglAYEWIQKGLEWQ 114
Cdd:PRK06602  90 IGwlgfveamifiLVLLVGL----------VYLWRKGALDWE 121
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 1-114 3.18e-17

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 71.25  E-value: 3.18e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306486871   1 MNTLIMLITNTSLASALVLVAFWLPQLNVYTEKYSPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQ 80
Cdd:MTH00018   1 YGLFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFL--FPWCVL 78

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 306486871  81 THMLNLM-LTVTFLLILILALGLAYEWIQKGLEWQ 114
Cdd:MTH00018  79 YNQIAPFgFWTMVGFLFILTLGLIYEWIKGGLEWE 113
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 31-113 8.07e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 68.04  E-value: 8.07e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306486871  31 TEKYSPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQTHMLNLM-LTVTFLLILILALGLAYEWIQK 109
Cdd:MTH00030  41 SEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFL--FPWSIVFNQLNLFsFWIVYTFLIVLAIGLAYEWIKG 118


                 ....
gi 306486871 110 GLEW 113
Cdd:MTH00030 119 GLEW 122
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 33-113 2.41e-09

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 50.83  E-value: 2.41e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306486871  33 KYSPYECGFDPTGSARLP--FSMKFFLVAITFLLFDLEIALLLPlpWAIQ---------THMLNLMLTVTfllililaLG 101
Cdd:PRK07928  37 KLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYP--WAVSfdalgvfglVEMALFMLTVF--------VA 106

                         90
                 ....*....|..
gi 306486871 102 LAYEWIQKGLEW 113
Cdd:PRK07928 107 YAYVWRRGGLEW 118
ndhC CHL00022
NADH dehydrogenase subunit 3
 13-113 3.38e-07

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 45.36  E-value: 3.38e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306486871  13 LASALVLVAFWLPQL----NVYTEKYSPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQTHMLNLML 88
Cdd:CHL00022  16 ISSLIPILAFLISGLlapiSKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVSA 93

                         90       100
                 ....*....|....*....|....*.
gi 306486871  89 TV-TFLLILILALGLAYEWIQKGLEW 113
Cdd:CHL00022  94 FIeALIFVLILIVGLVYAWRKGALEW 119
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
32-113 1.75e-05

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 40.88  E-value: 1.75e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306486871  32 EKYSPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLLPlpWAIQTHMLNLMLTV-TFLLILILALGLAYEWIQKG 110
Cdd:PRK07756  41 AKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYP--WAVAYDKLGLFALIeMLIFVVMLLVGLAYAWKKKV 118


                 ...
gi 306486871 111 LEW 113
Cdd:PRK07756 119 LQW 121
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
33-114 3.32e-05

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 40.42  E-value: 3.32e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306486871  33 KYSPYECGFDPTGSARlPFSMKFFLVAITFLLFDLEIALLlpLPWAIQTHMLNLM-LTVTFLLILILALGLAYEWIQKGL 111
Cdd:PRK08489  47 KLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFM--FPWAVDFKLLGLFgLIEMLLFIVLLTIGFIYAWKKGAL 123


                 ...
gi 306486871 112 EWQ 114
Cdd:PRK08489 124 EWQ 126
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 17-73 3.73e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 39.88  E-value: 3.73e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 306486871  17 LVLVAFWLPQLNVYTEKYSPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLL 73
Cdd:MTH00092  18 LYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFL 74
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 34-76 4.82e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 39.50  E-value: 4.82e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 306486871  34 YSPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLLPLP 76
Cdd:MTH00060  38 VSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80
PRK06073 PRK06073
NADH dehydrogenase subunit A; Validated
 33-92 3.14e-03

NADH dehydrogenase subunit A; Validated


Pssm-ID: 235690  Cd Length: 124  Bit Score: 34.97  E-value: 3.14e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 306486871  33 KYSPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQTHMLNLMLTVTF 92
Cdd:PRK06073  40 KVSRYEAGNPPTGPAKLWLPMQYYGYLLLFLTLEPIVVLLLLIAFAPYYTFRDLLLLIVV 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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