|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
1.23e-153 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 435.04 E-value: 1.23e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 1 MNPITLLLVMITIFTGTLLTMISSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATY 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 81 SGQWNITSTHNQFTPLTITIALSMKLGMTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQIHPWMNPNILLLIALL 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 161 SILAGGWGGLNQTQLRKILAYSSIAHMGWMMAVLMFCPSLTVLNLLIYLALTIVMFTILNLNMNTTMLTLSNLWNKTPMI 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 241 TLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNSNIIMVMTMTTMALLNLYFYMRLIYSTSLTLFPTFNNMKMKWQLQTM 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
|
330 340
....*....|....*....|....*..
gi 311088071 321 NQTRLMPSLIILSTLSLPLAPTFSTLY 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-284 |
1.14e-20 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 90.45 E-value: 1.14e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 23 SSHWLLMWIGLEINMLAIIP-ILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATYSGQWNITSTHNQFTP------ 95
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGglnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 96 -----LTITIALSMKLGMTPFHFWVPEVTQGISLLAGMLLL-TWQKLAPISIMLQIHPWMNP-----NILLLIALLSILA 164
Cdd:pfam00361 81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIRRSLLYLPSspfiqQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 165 GGWGGLNQTQLRKILAYSSIAHMGWMMAVLMFCPSLTVLNLLIYL-------ALTIVMFTILNLNMNTT--MLTLSNLWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLlthglfsAGLFLCAGSVIYRRVHTrnIRDYGGLAK 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 311088071 236 KTPMITLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNSNIIMVMTMTT 284
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVV 289
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
10-298 |
2.22e-18 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 85.94 E-value: 2.22e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 10 MITIFTGTLLTMISSHWLLMWIGLEINMLAI-IPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATYSGQWNITS 88
Cdd:COG1007 108 LLFATLGMMLMASANDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAG 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 89 -----THNQFTPLTITIALSM-------KLGMTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQIHPWMNPNILLL 156
Cdd:COG1007 188 iaaalAAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPGLAAD 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 157 IALLSI-------LAGGWGGLNQTQLRKILAYSSIAHMGWMMAVLMFCPSLTVLNLLIYLALTIVM----FTILNL---- 221
Cdd:COG1007 268 WQLLLAvlavlsmTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAYLFMnlgaFAVILLlsrk 347
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 311088071 222 -NMNTTMLTLSNLWNKTPMITLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNSNIIMVMTMTTMALLNLYFYMRLIY 298
Cdd:COG1007 348 gGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
7-297 |
3.96e-18 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 85.00 E-value: 3.96e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 7 LLVMITIFtGTLLTMISSHWLLMWIGLEINMLAI-IPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATYSGQWN 85
Cdd:TIGR01770 106 ILLLFALL-GIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLN 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 86 ITSTHNQFTPLTITI------------ALSMKLGMTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQI-------- 145
Cdd:TIGR01770 185 FEDLLLFLSNGMLNIsllllgivlilvGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyilfgf 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 146 -HPWMNpnILLLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMAVLMFCPSLTVLNLLIYLALTIVM----FTIL- 219
Cdd:TIGR01770 265 sEAWQI--FLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMslgaFGVLs 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 220 -----NLNMNTTMLTLSNLWNKTPMITLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNSNIIMVMTMTTMALLNLYFYM 294
Cdd:TIGR01770 343 llrsyKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYL 422
|
...
gi 311088071 295 RLI 297
Cdd:TIGR01770 423 RVV 425
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
1.23e-153 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 435.04 E-value: 1.23e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 1 MNPITLLLVMITIFTGTLLTMISSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATY 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 81 SGQWNITSTHNQFTPLTITIALSMKLGMTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQIHPWMNPNILLLIALL 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 161 SILAGGWGGLNQTQLRKILAYSSIAHMGWMMAVLMFCPSLTVLNLLIYLALTIVMFTILNLNMNTTMLTLSNLWNKTPMI 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 241 TLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNSNIIMVMTMTTMALLNLYFYMRLIYSTSLTLFPTFNNMKMKWQLQTM 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
|
330 340
....*....|....*....|....*..
gi 311088071 321 NQTRLMPSLIILSTLSLPLAPTFSTLY 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
2.88e-108 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 319.83 E-value: 2.88e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 1 MNPITLLLVMITIFTGTLLTMISSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATY 80
Cdd:MTH00135 1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 81 SGQWNITSTHNQFTPLTITIALSMKLGMTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQIHPwMNPNILLLIALL 160
Cdd:MTH00135 81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAP-TNPTLLITLGLT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 161 SILAGGWGGLNQTQLRKILAYSSIAHMGWMMAVLMFCPSLTVLNLLIYLALTIVMFTILNLNMNTTMLTLSNLWNKTPMI 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 241 TLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNSNIIMVMTMTTMALLNLYFYMRLIYSTSLTLFPTFNNMKMKWQLQTM 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319
|
330 340
....*....|....*....|....*.
gi 311088071 321 NQTRLMPSLIILSTLSLPLAPTFSTL 346
Cdd:MTH00135 320 QLTLPLAISTTATLMLLPLTPAILAL 345
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
3.59e-102 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 304.44 E-value: 3.59e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 1 MNPITLLLVMITIFTGTLLTMISSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATY 80
Cdd:MTH00112 1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 81 SGQWNITSTHNQFTPLTITIALSMKLGMTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQIHPWMNPNILLLIALL 160
Cdd:MTH00112 81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 161 SILAGGWGGLNQTQLRKILAYSSIAHMGWMMAVLMFCPSLTVLNLLIYLALTIVMFTILNLNMNTTMLTLSNLWNKTPMI 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 241 TLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNSNIIMVMTMTTMALLNLYFYMRLIYSTSLTLFPTFNNMKMKWQLqTM 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRT-KP 319
|
330 340
....*....|....*....|....*.
gi 311088071 321 NQTRLMPSLIILSTLSLPLAPTFSTL 346
Cdd:MTH00112 320 KKNTLTATLTTLSTLLLPLSPMILTI 345
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
3.78e-101 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 301.84 E-value: 3.78e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 1 MNPITLLLVMITIFTGTLLTMISSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATY 80
Cdd:MTH00070 1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 81 SGQWNITSTHNQFTPLTITIALSMKLGMTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQIHPWMNPNILLLIALL 160
Cdd:MTH00070 81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 161 SILAGGWGGLNQTQLRKILAYSSIAHMGWMMAVLMFCPSLTVLNLLIYLALTIVMFTILNLNMNTTMLTLSNLWNKTPMI 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 241 TLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNSNIIMVMTMTTMALLNLYFYMRLIYSTSLTLFPTFNNMKMKWQLQTm 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKN- 319
|
330 340
....*....|....*....|....*..
gi 311088071 321 NQTRLMPSLIILSTLSLPLAPTFSTLY 347
Cdd:MTH00070 320 KTNNLLSLTIILSLMLLPITPTILNLF 346
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
1-347 |
8.03e-76 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 237.14 E-value: 8.03e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 1 MNPITLLLVMITIFTGTLLTMISSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATY 80
Cdd:MTH00041 1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 81 SGQWNITSTHNQFTPLTITIALSMKLGMTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQIHPWMNPNILLLIALL 160
Cdd:MTH00041 81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 161 SILAGGWGGLNQTQLRKILAYSSIAHMGWMMAVLMFCPSLTVLNLLIYLALTIVMFTILNLNMNTTMLTLSNLWNKTPMI 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 241 TLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNSNIIMVMTMTTMALLNLYFYMRLIYSTSLTLFPTFNNMKMKWQLQTM 320
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320
|
330 340
....*....|....*....|....*....
gi 311088071 321 NQTR--LMPSLIILSTLSLPLAPTFSTLY 347
Cdd:MTH00041 321 ITVYgvILSILSSISILGLLLIPLFLSFL 349
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
1.26e-75 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 236.40 E-value: 1.26e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 1 MNPITLLLVMITIFTGTLLTMISSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATY 80
Cdd:MTH00200 1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 81 SGQWNITSTHNQFTPLTITIALSMKLGMTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQIHPWMNPNILLLIALL 160
Cdd:MTH00200 81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 161 SILAGGWGGLNQTQLRKILAYSSIAHMGWMMAVLMFCPSLTVLNLLIYLALTIVMFTILNLNMNTTMLTLSNLWNKTPMI 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 241 TLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNSNIIMVMTMTTMALLNLYFYMRLIYSTSLTLFPTFNNMKMKWQLQTm 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKS- 319
|
330 340
....*....|....*....|....*.
gi 311088071 321 NQTRLMPSLIILSTLSLPLAPTFSTL 346
Cdd:MTH00200 320 NSNLLVGLLLLLSILGLPLTPQLLFL 345
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
7-335 |
4.09e-46 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 159.67 E-value: 4.09e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 7 LLVMITIFTGTLLTMISSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATYSGQWNI 86
Cdd:MTH00144 7 LLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 87 TSThnqftpltITIALSMKLGMTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQIHPWMNPNILLLIA-LLSILAG 165
Cdd:MTH00144 87 MSL--------LLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVIsVLSALVG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 166 GWGGLNQTQLRKILAYSSIAHMGWMMAVLMFCPSLTVLNLLIYLALTIVMFTILNLNMNTTMLTLSNLwNKTPMITLTTM 245
Cdd:MTH00144 159 SIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSL-KPSYKTGLSII 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 246 IALLSLGGLPPLTGFLPKWMIIQELSKNSNIIMVMTMTTMALLNLYFYMRLIYSTSLTLFPTFNNMKMKWQLQTMNQTRL 325
Cdd:MTH00144 238 SLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNSSIISLNL 317
|
330
....*....|
gi 311088071 326 MPSLIILSTL 335
Cdd:MTH00144 318 LGGLLFLLLY 327
|
|
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-343 |
1.33e-43 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 153.06 E-value: 1.33e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 1 MNPITLLLVMITIFTGTLLTMISSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNAty 80
Cdd:MTH00160 2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNM-- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 81 sgqwNITSTHNQFTPLTITIALSMKLGMTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQIhpwMNPNILLLIALL 160
Cdd:MTH00160 80 ----LNLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 161 SILAGGWGGLNQTQLRKILAYSSIAHMGWMMAVLMFCPSLTVLNLLIYLALTIVMFTILNLNMNTTMLTLSNLWNKTPMI 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 241 TLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNSNIIMVMTMTTMALLNLYFYMRLIYStslTLFPTFNNMKMKWQLQTM 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYS---SLMLNYNKNKWNLKKKKN 309
|
330 340
....*....|....*....|...
gi 311088071 321 NQTRLMPSLIILSTLSLPLAPTF 343
Cdd:MTH00160 310 KFSLILNFLSFISLFGLILSSLL 332
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
5-312 |
7.84e-41 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 145.69 E-value: 7.84e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 5 TLLLVMITIFTGTLLTMISSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLnatysgQW 84
Cdd:MTH00011 7 TMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 85 NITSTHNQFTPLTITIALSMKLGMTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQIHPWMNPNILLLIALLSILA 164
Cdd:MTH00011 81 SFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 165 GGWGGLNQTQLRKILAYSSIAHMGWMMAVLMFCPSLTVLNLLIYLALTIVMFTILNLNMNTTMLTLSNLWNKTPMITLTT 244
Cdd:MTH00011 161 GGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSL 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 311088071 245 MIALLSLGGLPPLTGFLPKWMIIQELSKNSNIIMVMTMTTMALLNLYFYMRLIYStSLTLFPTFNNMK 312
Cdd:MTH00011 241 FIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN-FMYLSPTFSSLK 307
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
8-343 |
1.14e-32 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 124.01 E-value: 1.14e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 8 LVMITIFTGTLLTMISSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLnaTYSGQWNIT 87
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSL--SFSNLYLSL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 88 STHnqftpLTITIALSMKLGMTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQIHPwmNPNILLLIALLSILAGGW 167
Cdd:MTH00197 80 LSV-----VLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGI 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 168 GGLNQTQLRKILAYSSIAHMGWMMAVLMFCPSLTVLNLLIYLALTIVMFTILNLNMNTTMLTLSNLWNKTPMITLTTMIA 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 248 LLSLGGLPPLTGFLPKWMIIQELSKNSNIIMVMTMTTMALLNLYFYMRLIYSTSLtlfptfNNMKMKWQLQTMNQTRLMP 327
Cdd:MTH00197 233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI------LSNWMINFLMKINLLYSGL 306
|
330
....*....|....*.
gi 311088071 328 SLIILSTLSLPLAPTF 343
Cdd:MTH00197 307 FILLMMMLPLLMIFTM 322
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
7-267 |
5.35e-22 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 96.24 E-value: 5.35e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 7 LLVMITIFtGTLLTMISSHWLLMWIGLEINMLAI-IPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATYSGQWN 85
Cdd:MTH00199 101 ILILIVAL-GSLLLVSSINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETS 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 86 ITSTHNQFT----PLTITIALSMKLGMTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQIHPWMNpnILLLIALLS 161
Cdd:MTH00199 180 IQGINSILTgdvgKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLS 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 162 ILAGGWGGLNQTQLRKILAYSSIAHMG---WMMAVLMFCP-SLTVLNLLIYLALTIVMFTI-LNLNMNTTMLT-LSNLWN 235
Cdd:MTH00199 258 IIYGAIGALNQTKIKRLLAYSGIGHMGfilFGVAIGSFESiQASLIYMIIYVIMSICSFSIiLSLKLTKGLIVeVSGLSR 337
|
250 260 270
....*....|....*....|....*....|..
gi 311088071 236 KTPMITLTTMIALLSLGGLPPLTGFLPKWMII 267
Cdd:MTH00199 338 KNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-284 |
1.14e-20 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 90.45 E-value: 1.14e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 23 SSHWLLMWIGLEINMLAIIP-ILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATYSGQWNITSTHNQFTP------ 95
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGglnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 96 -----LTITIALSMKLGMTPFHFWVPEVTQGISLLAGMLLL-TWQKLAPISIMLQIHPWMNP-----NILLLIALLSILA 164
Cdd:pfam00361 81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIRRSLLYLPSspfiqQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 165 GGWGGLNQTQLRKILAYSSIAHMGWMMAVLMFCPSLTVLNLLIYL-------ALTIVMFTILNLNMNTT--MLTLSNLWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLlthglfsAGLFLCAGSVIYRRVHTrnIRDYGGLAK 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 311088071 236 KTPMITLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNSNIIMVMTMTT 284
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVV 289
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
16-297 |
3.63e-20 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 90.09 E-value: 3.63e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 16 GTLLTMISSHWLLMWIGLEINMLAI-IPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVL-------------NATYS 81
Cdd:MTH00196 5 GILCLISSSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALlcgttgglhlsyiNLVLN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 82 GQWNITSTHNQFTPLTITIALSMKLGMTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQIHPwmNPNILLLIALLS 161
Cdd:MTH00196 85 SGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGL--NVNILLIGGLFS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 162 ILAGGWGGLNQTQLRKILAYSSIAHMGWMMAVLMFCPSLTVLNLLIYLALTIVM-----FTILNLNMNTTMLT-LSNLWN 235
Cdd:MTH00196 163 LFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFESIQASLVYLFIYIIMsicvfSIILALNVYKNLIIeFSGLSR 242
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 311088071 236 KTPMITLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNSNIIMVMTMTTMALLNLYFYMRLI 297
Cdd:MTH00196 243 RLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRIV 304
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
10-298 |
2.22e-18 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 85.94 E-value: 2.22e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 10 MITIFTGTLLTMISSHWLLMWIGLEINMLAI-IPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATYSGQWNITS 88
Cdd:COG1007 108 LLFATLGMMLMASANDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAG 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 89 -----THNQFTPLTITIALSM-------KLGMTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQIHPWMNPNILLL 156
Cdd:COG1007 188 iaaalAAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPGLAAD 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 157 IALLSI-------LAGGWGGLNQTQLRKILAYSSIAHMGWMMAVLMFCPSLTVLNLLIYLALTIVM----FTILNL---- 221
Cdd:COG1007 268 WQLLLAvlavlsmTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAYLFMnlgaFAVILLlsrk 347
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 311088071 222 -NMNTTMLTLSNLWNKTPMITLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNSNIIMVMTMTTMALLNLYFYMRLIY 298
Cdd:COG1007 348 gGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
7-297 |
3.96e-18 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 85.00 E-value: 3.96e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 7 LLVMITIFtGTLLTMISSHWLLMWIGLEINMLAI-IPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATYSGQWN 85
Cdd:TIGR01770 106 ILLLFALL-GIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLN 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 86 ITSTHNQFTPLTITI------------ALSMKLGMTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQI-------- 145
Cdd:TIGR01770 185 FEDLLLFLSNGMLNIsllllgivlilvGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyilfgf 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 146 -HPWMNpnILLLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMAVLMFCPSLTVLNLLIYLALTIVM----FTIL- 219
Cdd:TIGR01770 265 sEAWQI--FLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMslgaFGVLs 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 220 -----NLNMNTTMLTLSNLWNKTPMITLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNSNIIMVMTMTTMALLNLYFYM 294
Cdd:TIGR01770 343 llrsyKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYL 422
|
...
gi 311088071 295 RLI 297
Cdd:TIGR01770 423 RVV 425
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
7-221 |
7.30e-15 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 75.24 E-value: 7.30e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 7 LLVMITIFtGTLLTMISSHWLLMWIGLEINMLAI-IPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATYSGQWN 85
Cdd:PRK05777 107 LLVLFALL-GMMVMVSANDLLTLFLGLELLSLPLyALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLS 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 86 ITSTHNQFTPLT------------ITIALSMKLGMTPFHFWVPEVTQGISLLAGMLLLTWQKLAPISIMLQI-------H 146
Cdd:PRK05777 186 FAGIAKALADGSgnsllllfglvfLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLlvvafggL 265
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 311088071 147 PWMNPNILLLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMAVLMFCPSLTVLNLLIYLALTIVM----FTILNL 221
Cdd:PRK05777 266 SEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFMtlgaFGVISL 344
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
5-301 |
4.24e-11 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 63.63 E-value: 4.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 5 TLLLVMITiftGTLLTMISSHWLLMWIGLEINMLAIIPILMKNYKPRSTEAATKYFLMQATASMLLMFTIVLNATYSGQW 84
Cdd:COG0651 111 PLFLLLLA---GMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTL 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 85 NITSTHNQFTPLT----------ITIALSMKLGMTPFHFWVPE-----------VTQGISLLAGM--LLLTWQKLAPISI 141
Cdd:COG0651 188 NMADLAARLAELDpglllaafalLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADP 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 142 MLQIHPWMnpnilLLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMAVLMFCPSLTVLNLLIYLALTIVMFTILNL 221
Cdd:COG0651 268 ALFLGTLL-----LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLNHALAKALLFL 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 222 NM--------NTTMLTLSNLWNKTPMITLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNSNIIMVMTMTTMALLNLYFY 293
Cdd:COG0651 343 AAgaieratgTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYF 422
|
....*...
gi 311088071 294 MRLIYSTS 301
Cdd:COG0651 423 VRIFGRAQ 430
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
6-191 |
2.04e-09 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 58.72 E-value: 2.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 6 LLLVMItIFTGTLLTMISSHWLLMWIGLEINMLAIIPILMKNYKPRST---------EAATKYFLMQATASMLLMFTIVL 76
Cdd:MTH00198 191 FALVLI-VGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCAL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 77 NATYSGQ--------------WNITSTHNQFTPLTITIALSMKLGMTPFHFWVPEVTQGISLLAGMLLLTWQKLapISIM 142
Cdd:MTH00198 270 YFGFTGNegmlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYI 347
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 311088071 143 LQIHPWMNPNILLLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMM 191
Cdd:MTH00198 348 LLTSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIL 396
|
|
| NADH_dehy_S2_C |
pfam06444 |
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ... |
291-341 |
1.22e-07 |
|
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.
Pssm-ID: 461914 [Multi-domain] Cd Length: 51 Bit Score: 47.64 E-value: 1.22e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 311088071 291 YFYMRLIYSTSLTLFPTFNNMKMKWQLQTMNQTRLMPSLIILSTLSLPLAP 341
Cdd:pfam06444 1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
49-292 |
2.16e-06 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 49.17 E-value: 2.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 49 KPRSTEAATKYFLMQATASMLLMFTIVLNATYSG---------QWNITSTHNQFTPLTITIALSMKLGMTPFHFWVPEV- 118
Cdd:TIGR01972 151 GPNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGgtfdllellNLPLPFGVQTWLFLAFFIAFAVKVPLFPLHTWLPDAh 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 119 ----TQGISLLAGMLLltwqKLAPISIM---LQIHP----WMNPnILLLIALLSILAGGWGGLNQTQLRKILAYSSIAHM 187
Cdd:TIGR01972 231 veapTAGSVILAGVLL----KMGTYGFLrfnLPLFPdaslYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHM 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 188 GWmmaVLMFCPSLTVLNLL----------IYLALTIVMFTILNLNMNTTMLT-LSNLWNKTPMITLTTMIALLSLGGLPP 256
Cdd:TIGR01972 306 GF---VLLGIFSFNELGISgavfqmishgLITAALFLLVGVLYERAHTRDIAkYGGLANKMPVLAAFFMLFAMASLGLPG 382
|
250 260 270
....*....|....*....|....*....|....*.
gi 311088071 257 LTGFLPKWMIIQELSKNSNIIMVMTMTTMALLNLYF 292
Cdd:TIGR01972 383 TSGFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYM 418
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
9-242 |
3.58e-06 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 48.51 E-value: 3.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 9 VMITIFTGTLLTMISSHWLLMWIGLEinMLAIIPILMKNY---KPRSTEAATKYFLMQATASMLLMFTIVLNATYS-GQW 84
Cdd:PRK02504 115 ILLTATLGGMFLSGATELVMIFISLE--TLSIASYLLTGYmkrDPRSNEAALKYLLIGAASSAIFLYGSSLLYGLSgGST 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 85 NITSTHNQFT---PLTITIAL-------SMKLGMTPFHFWVPEVTQGISLLAGMLLLTWQKLA----PISIMLQIHPWMN 150
Cdd:PRK02504 193 QLSAIALALItspSLGLALALvfviagiAFKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFD 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 151 PN---ILLLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMAVLMFCP----SLTVLNLLIYLALTIVMFT---ILN 220
Cdd:PRK02504 273 EQwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMIGLVAGTeagyASMVFYLLAYLFMNLGAFAcviLFS 352
|
250 260
....*....|....*....|...
gi 311088071 221 LNMNTTMLT-LSNLWNKTPMITL 242
Cdd:PRK02504 353 LRTGTDQISdYAGLYQKDPLLTL 375
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
55-192 |
2.55e-05 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 45.84 E-value: 2.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 55 AATKYFLMQATASMLLMFTIVLNATYSGQW--NITSTHNQFTPLT--------ITIALSMKLGMTPFHFWVPEV-----T 119
Cdd:COG1008 162 AAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAAPLPLTaqlllflaFFIAFAVKVPMFPFHTWLPDAhveapT 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 120 QGISLLAGMLL----------------LTWQKLAPISIMLQIhpwmnpnilllialLSILAGGWGGLNQTQLRKILAYSS 183
Cdd:COG1008 242 AGSVLLAGVLLkmggygllrfalplfpEASAYFAPLLAALGV--------------IGIIYGALVALAQTDLKRLIAYSS 307
|
....*....
gi 311088071 184 IAHMGWMMA 192
Cdd:COG1008 308 VSHMGFVLL 316
|
|
| PRK12561 |
PRK12561 |
NAD(P)H-quinone oxidoreductase subunit 4; Provisional |
55-191 |
6.17e-05 |
|
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Pssm-ID: 237137 [Multi-domain] Cd Length: 504 Bit Score: 44.64 E-value: 6.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 55 AATKYFLMQATASMLLMFTIVLNATYSGQ--WNITSTHNQFTPLTIT--------IALSMKLGMTPFHFWVP----EVTQ 120
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAKSYPLALElllyagflIAFGVKLPIFPLHTWLPdahgEASA 217
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 311088071 121 GISLLAGMLLLTWQKLAPISIMLQihpwMNPNILLLIALLSILAGG----WGGLN---QTQLRKILAYSSIAHMGWMM 191
Cdd:PRK12561 218 PVSMILAGVLLKMGGYALIRFNVQ----MLPDAHVYFAPALAILGVvniiYGALNafaQDNVKRRLAYSSVSHMGFVL 291
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
5-299 |
1.48e-03 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 40.47 E-value: 1.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 5 TLLLVMITiftGTLLTMISSHWLLMWIGLEINMLAIIPIL-MKNYKPRSTEAATKYFLMQATASMLLMFTIVLnatYSGQ 83
Cdd:PRK08376 125 TLILLLEL---GMLGMAITGDLFNFFVFLEIMSIASYALVaFRNDTWEAIEAGIKYMFVGSLASSMVLLGIAL---LYGQ 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 84 WN-----ITSTHNQFTPLTITI--------ALSMKLGMTPFHFWVPEV-TQGISLLAGMLLLTWQ----KLAPISIML-- 143
Cdd:PRK08376 199 YGtlnmaYLAVKMSENPTVVAKialalfiaGLAMKSGAVPVHMWLPDAyPAAPSSISAMLLVIKQaglyALARVLFSIyg 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 144 -QIHPWMNPNILLLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMavLMFCPSLTVLNLLIY-----LALTIVMFT 217
Cdd:PRK08376 279 pAINLATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYML--LGLGVGLAALGDPAMasygeIALAGGIYH 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 218 ILNLNMNTTML-----------------TLSNLWNKTPMITLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNSNIIMVM 280
Cdd:PRK08376 357 IVNHALYKALLfltagaviyetgtrnlnELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSALFNPILGVI 436
|
330
....*....|....*....
gi 311088071 281 TMTTMAlLNLYFYMRLIYS 299
Cdd:PRK08376 437 AMIGSV-LTLASFVKVFHT 454
|
|
| PRK05846 |
PRK05846 |
NADH:ubiquinone oxidoreductase subunit M; Reviewed |
55-191 |
3.82e-03 |
|
NADH:ubiquinone oxidoreductase subunit M; Reviewed
Pssm-ID: 235622 [Multi-domain] Cd Length: 497 Bit Score: 39.03 E-value: 3.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 55 AATKYFLMQATASMLLMFTI----VLNATYSGQWNITSTHN-QFTP-------LTITIALSMKLGMTPFHFWVPEV---- 118
Cdd:PRK05846 162 AATKFFLYTLLGSLLMLVAIiylvVVYYNATGTFDIADLLNlPLPPgvqywlfLAFFIAFAVKMPMFPLHTWLPDAhvqa 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 119 -TQGISLLAGMLLltwqKLAP---ISIMLQIHP----WMNPnILLLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWM 190
Cdd:PRK05846 242 pTAGSVLLAGILL----KMGAyglLRFSLPLFPdashEFAP-IIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFV 316
|
.
gi 311088071 191 M 191
Cdd:PRK05846 317 T 317
|
|
| NuoL |
COG1009 |
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ... |
49-300 |
5.16e-03 |
|
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440633 [Multi-domain] Cd Length: 608 Bit Score: 38.59 E-value: 5.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 49 KPRSTEAATKYFLMQATASMLLMFTIVLNATYSGQWNIT----STHNQFTPLTITIALSM-------KLGMTPFHFWVPE 117
Cdd:COG1009 157 KPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSellaAAPTILSSPLLTLILLLlllgafgKSAQFPLHFWLPD 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 118 -----------------VTQGISLLAgmllltwqKLAPIsiMLQIHPWMNpnILLLIALLSILAGGWGGLNQTQLRKILA 180
Cdd:COG1009 237 amegptpvsallhaatmVKAGVYLLA--------RLSPL--FALSPVWLT--VVAIIGAITALFAALIALAQTDIKRVLA 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088071 181 YSSIAHMGWMMAVLMFCpsltvlnlliylALTIVMFTILN----------------LNMNTT-MLTLSNLWNKTPMITLT 243
Cdd:COG1009 305 YSTVSQLGYMFLALGVG------------AYVAALFHLLThaffkallflgagsviHATGTRdIRKMGGLRKKMPITAIT 372
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 311088071 244 TMIALLSLGGLPPLTGFLPKWMIIQEL--SKNSNIIMVMTMTTMALLNLYFYMRLIYST 300
Cdd:COG1009 373 FLIGALSLAGIPPFAGFFSKEAILEAAleAGGLGPLLLAVALLGAFLTAFYSFRLFFLV 431
|
|
| |
