NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|311088135|gb|ADP68202|]
View 

NADH dehydrogenase subunit 4 (mitochondrion) [Lepilemur betsileo]

Protein Classification

NADH dehydrogenase subunit 4( domain architecture ID 11475903)

NADH dehydrogenase subunit 4 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
1-459 0e+00

NADH dehydrogenase subunit 4; Provisional


:

Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 729.77  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135   1 MLKIIVPTAMLLPVIWYSTNPMTWMNITLHSLTISLMSLFLFSQADTNSNNFSPTFFSDPLSSPLLVLTMWLLPLTVVAS 80
Cdd:MTH00110   1 MLKIIIPTIMLIPLTWLSKNNMIWINTTTYSLLISLISLLLLNQPNDNSLNFSLLFFSDSLSTPLLILTTWLLPLMLMAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  81 QYHLTKEPWERKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPL 160
Cdd:MTH00110  81 QHHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 161 LVALSYIQSSMGTLNLFMMTYWLQELPNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGG 240
Cdd:MTH00110 161 LVALLYIQNNLGSLNFLLLQLWAQPLPNSWSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 241 YGMMRITMILNPLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSLMGATTLMIAHG 320
Cdd:MTH00110 241 YGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 321 LTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGLNM 400
Cdd:MTH00110 321 LTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNM 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 311088135 401 LVTATYSLYMLTTTQRGKSPYHMQNFSPSLTRENTLMSMHILPLLLLTLNPKILMGPTY 459
Cdd:MTH00110 401 LITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGPTY 459
 
Name Accession Description Interval E-value
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
1-459 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 729.77  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135   1 MLKIIVPTAMLLPVIWYSTNPMTWMNITLHSLTISLMSLFLFSQADTNSNNFSPTFFSDPLSSPLLVLTMWLLPLTVVAS 80
Cdd:MTH00110   1 MLKIIIPTIMLIPLTWLSKNNMIWINTTTYSLLISLISLLLLNQPNDNSLNFSLLFFSDSLSTPLLILTTWLLPLMLMAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  81 QYHLTKEPWERKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPL 160
Cdd:MTH00110  81 QHHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 161 LVALSYIQSSMGTLNLFMMTYWLQELPNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGG 240
Cdd:MTH00110 161 LVALLYIQNNLGSLNFLLLQLWAQPLPNSWSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 241 YGMMRITMILNPLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSLMGATTLMIAHG 320
Cdd:MTH00110 241 YGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 321 LTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGLNM 400
Cdd:MTH00110 321 LTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNM 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 311088135 401 LVTATYSLYMLTTTQRGKSPYHMQNFSPSLTRENTLMSMHILPLLLLTLNPKILMGPTY 459
Cdd:MTH00110 401 LITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGPTY 459
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
59-411 9.68e-74

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 239.98  E-value: 9.68e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  59 DPLSSPLLVLTMWLLPLTVVASqyhlTKEPWERKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGN 138
Cdd:COG1008   81 DGISLPLVLLTALLTPLAILAS----WNEIKKRPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLIGIWGG 156
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 139 QtERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPNSWSnYLLWTACIMAFMIKMPLYGLHMWLPK 218
Cdd:COG1008  157 E-RRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAELAAAPLPLTAQ-LLLFLAFFIAFAVKVPMFPFHTWLPD 234
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 219 AHVEAPIAGSMILAAILLKLGGYGMMRITMILNPL-TKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALV 297
Cdd:COG1008  235 AHVEAPTAGSVLLAGVLLKMGGYGLLRFALPLFPEaSAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 298 IVAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLIG 377
Cdd:COG1008  315 LLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVG 394
                        330       340       350
                 ....*....|....*....|....*....|....
gi 311088135 378 ELLVTMAAFSWSNTTIILTGLNMLVTATYSLYML 411
Cdd:COG1008  395 EFLVLLGAFQVNPWLAILAALGLILTAAYLLWMY 428
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
59-459 8.87e-70

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 229.44  E-value: 8.87e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135   59 DPLSSPLLVLTMWLLPLTVVASQYHLTKepweRKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGN 138
Cdd:TIGR01972  76 DGISLLLVLLTALLTLLAILASWESIQK----RVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGG 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  139 QTeRLNAGLYFLFYTLTGSLPLLVALSYIQSSMGtlNLFMMTYWLQELPNSWSNYLLWTACIMAFMIKMPLYGLHMWLPK 218
Cdd:TIGR01972 152 PN-RIYAAMKFFLYTLAGSLLMLLAILGLYFLGG--GTFDLLELLNLPLPFGVQTWLFLAFFIAFAVKVPLFPLHTWLPD 228
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  219 AHVEAPIAGSMILAAILLKLGGYGMMRITMILNP-LTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALV 297
Cdd:TIGR01972 229 AHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFV 308
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  298 IVAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLIG 377
Cdd:TIGR01972 309 LLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVG 388
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  378 ELLVTMAAFSWSNTTIILTGLNMLVTATYSLYMLTTTQRG-KSPYHMQNFSPSLTRENTLMSMHILPLLLLTLNPKILMG 456
Cdd:TIGR01972 389 EFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLYKRVFFGeLSNPEVAEFPDLNGREIAVLAPLVVLILFLGLYPNPLLD 468

                  ...
gi 311088135  457 PTY 459
Cdd:TIGR01972 469 LTE 471
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
113-398 2.20e-66

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 214.48  E-value: 2.20e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  113 TELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPNSWSN 192
Cdd:pfam00361   2 NDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNSSGL 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  193 YLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKSMAYPFLMLCLWGMIMT 272
Cdd:pfam00361  82 LLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLG 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  273 SLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSLMGATTLMIAHGLTSSVLFCLANS-NYERVHSRTMLLARGLQAL 351
Cdd:pfam00361 162 SLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSvIYRRVHTRNIRDYGGLAKT 241
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 311088135  352 LPLMSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGL 398
Cdd:pfam00361 242 MPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGV 288
 
Name Accession Description Interval E-value
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
1-459 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 729.77  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135   1 MLKIIVPTAMLLPVIWYSTNPMTWMNITLHSLTISLMSLFLFSQADTNSNNFSPTFFSDPLSSPLLVLTMWLLPLTVVAS 80
Cdd:MTH00110   1 MLKIIIPTIMLIPLTWLSKNNMIWINTTTYSLLISLISLLLLNQPNDNSLNFSLLFFSDSLSTPLLILTTWLLPLMLMAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  81 QYHLTKEPWERKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPL 160
Cdd:MTH00110  81 QHHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 161 LVALSYIQSSMGTLNLFMMTYWLQELPNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGG 240
Cdd:MTH00110 161 LVALLYIQNNLGSLNFLLLQLWAQPLPNSWSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 241 YGMMRITMILNPLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSLMGATTLMIAHG 320
Cdd:MTH00110 241 YGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 321 LTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGLNM 400
Cdd:MTH00110 321 LTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNM 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 311088135 401 LVTATYSLYMLTTTQRGKSPYHMQNFSPSLTRENTLMSMHILPLLLLTLNPKILMGPTY 459
Cdd:MTH00110 401 LITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGPTY 459
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
1-457 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 605.27  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135   1 MLKIIVPTAMLLPVIWYSTNPMTWMNITLHSLTISLMSLFLFSQADTNSNNFSPTFFSDPLSSPLLVLTMWLLPLTVVAS 80
Cdd:MTH00124   1 MLKIILPTIMLIPTTLLSKPKFLWTNTTTYSLLIALLSLQWLKPPYYPTKNLTQWLGIDQISAPLLVLSCWLLPLMILAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  81 QYHLTKEPWERKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPL 160
Cdd:MTH00124  81 QNHLQHEPLQRKRTFLTTLILLQTFLILAFSATELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLISSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 161 LVALSYIQSSMGTLNLFMMTYWLQELPNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGG 240
Cdd:MTH00124 161 LIAILYLHNQTGTLSLPMLQLTHPTLTNSWTNLLLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 241 YGMMRITMILNPLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSLMGATTLMIAHG 320
Cdd:MTH00124 241 YGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 321 LTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGLNM 400
Cdd:MTH00124 321 LTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLAT 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 311088135 401 LVTATYSLYMLTTTQRGKSPYHMQNFSPSLTRENTLMSMHILPLLLLTLNPKILMGP 457
Cdd:MTH00124 401 LITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
1-456 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 568.78  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135   1 MLKIIVPTAMLLPVIWYSTNPMTWMNITLHSLTISLMSLFLFSQADTNSNNFSPTFFSDPLSSPLLVLTMWLLPLTVVAS 80
Cdd:MTH00068   1 MLKIIIPTLMLLPTTWLSPKKWLWTLTTTNSLIIAFLSLMWFNLPSETMNFTNKYFGIDQISSPLLILTCWLLPLMILAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  81 QYHLTKEPWERKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPL 160
Cdd:MTH00068  81 QNHLKNEPINRQRTYISMLIILQLTLILAFSATELILFYIFFEATLIPTLIIITRWGNQEERLNAGTYFLFYTLAGSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 161 LVALSYIQSSMGTLNLFMMTYWLQELPNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGG 240
Cdd:MTH00068 161 LIALLILQNSLGSLSLILLELMSPMQLMTYTNKIWWLACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 241 YGMMRITMILNPLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSLMGATTLMIAHG 320
Cdd:MTH00068 241 YGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 321 LTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGLNM 400
Cdd:MTH00068 321 LTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGLGT 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 311088135 401 LVTATYSLYMLTTTQRGKSPYHMQNFSPSLTRENTLMSMHILPLLLLTLNPKILMG 456
Cdd:MTH00068 401 LITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILKPELISG 456
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
1-458 2.98e-169

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 483.69  E-value: 2.98e-169
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135   1 MLKIIVPTAMLLPVIWYSTNPMTWMNITLHSLTISLMSLF-LFSQADTNSNNFSPTFFSDPLSSPLLVLTMWLLPLTVVA 79
Cdd:MTH00127   1 MLKILIPTLMLIPTTWLTPAKWLWTTTLAHSLLIALASLTwLKNLSETGWSSLNLYMATDPLSTPLLVLTCWLLPLMILA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  80 SQYHLTKEPWERKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLP 159
Cdd:MTH00127  81 SQNHTAPEPINRQRMYITLLTSLQIFLILAFGATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLP 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 160 LLVALSYIQSSMGTLNLFMMTYWLQELPNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLG 239
Cdd:MTH00127 161 LLVALLLLQNSTGTLSMLTLQYSQPLQLSSWADKLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 240 GYGMMRITMILNPLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSLMGATTLMIAH 319
Cdd:MTH00127 241 GYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAH 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 320 GLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGLN 399
Cdd:MTH00127 321 GLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGLG 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 311088135 400 MLVTATYSLYMLTTTQRGKSPYHMQNFSPSLTRENTLMSMHILPLLLLTLNPKILMGPT 458
Cdd:MTH00127 401 TLITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPLLLLILKPELIWGWT 459
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
3-454 1.06e-157

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 454.01  E-value: 1.06e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135   3 KIIVPTAMLLPVIWYSTNPMTWMNITLHSLTISLMSLFLFSQADTNSNNFSPTFFS-DPLSSPLLVLTMWLLPLTVVASQ 81
Cdd:MTH00206   1 KILIPLIMLLLMTILSKKKWLWRSTTFFSFLIALLFLLWFKWSSEVGWSFSNLYLSyDPLSSPLVILSCWLLPLMFLASQ 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  82 YHLTKEPWERKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLL 161
Cdd:MTH00206  81 NHMKNEPINRQRIYITLLIVLQLFLILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 162 VALSYIQSSMGTLNLFMMTYwlqELPNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGY 241
Cdd:MTH00206 161 IALLFLQNSLGSLSLYILYF---SKLTTWNNNLWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGY 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 242 GMMRITMILNPLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSLMGATTLMIAHGL 321
Cdd:MTH00206 238 GMMRIILILGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGL 317
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 322 TSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGLNML 401
Cdd:MTH00206 318 VSSALFCLANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFL 397
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|...
gi 311088135 402 VTATYSLYMLTTTQRGKSPYHMQNFSPSLTRENTLMSMHILPLLLLTLNPKIL 454
Cdd:MTH00206 398 FTAIYSLYMFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPVILLILNPNLI 450
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
1-455 4.94e-142

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 414.37  E-value: 4.94e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135   1 MLKIIVPTAMLLPVIWYSTNPMTWMNITLHSLTISLMSLFLFS-QADTNSNNFSPTFFSDPLSSPLLVLTMWLLPLTVVA 79
Cdd:MTH00044   1 MITLILLSLGIAITSWIVPKNKLWPISISQSSLISLLSLFLLNnHWSSSWHNLSLSLATDSLSSPLIILSCWLAPLSLLA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  80 SQYHLTKEPWERKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLP 159
Cdd:MTH00044  81 SINHLSNNSPNNQRTFISLIIIILTALIITFSSLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLP 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 160 LLVALSYIQSSMGTLNLFMMTYWLQELPNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLG 239
Cdd:MTH00044 161 LLISLIAIYSSSSSLSIPLSELNWLTSLSSNSSSIWWIFCILAFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 240 GYGMMRITMILN-PLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSLMGATTLMIA 318
Cdd:MTH00044 241 GYGLIRLINLFSlPSANNISFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIA 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 319 HGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGL 398
Cdd:MTH00044 321 HGLVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIGL 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 311088135 399 NMLVTATYSLYMLTTTQRGKSPYHMQNFSPSLTRENTLMSMHILPLLLLTLNPKILM 455
Cdd:MTH00044 401 ATVFGAIYSLLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPLILIIINPNIIL 457
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
37-441 1.08e-115

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 345.67  E-value: 1.08e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  37 MSLFLFSQADTNSNNFSPTFFSDPLSSPLLVLTMWLLPLTVVASQYHLTKEPWERKkhFLSTLISLQLLLVMTFATTELI 116
Cdd:MTH00150   1 LSLLLLYSSFSSYESLSELFSVDSMSSLLISLSLWISGLMMLASQKSVKLRNKSSS--FSLLVLLLCLILVLAFSVSSLL 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 117 MFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPNSWsnyLLW 196
Cdd:MTH00150  79 MFYFFFEASLIPTLLLILGWGYQPERLQAGMYMMLYTVGASLPLLLVILWMSSSYGSSFMLLISSLRKLLSSMG---LWG 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 197 TACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKSMAYPFLMLCLWGMIMTSLIC 276
Cdd:MTH00150 156 LLVFLAFLVKLPMYPFHLWLPKAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLIC 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 277 LRQTDLKSLIAYSSVSHMALVIVAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMS 356
Cdd:MTH00150 236 LRQSDVKSLIAYSSVGHMSLVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLS 315
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 357 TWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGLNMLVTATYSLYMLTTTQRGKSPYHMQNFSPSLTRENTL 436
Cdd:MTH00150 316 LWWFLFCIINMAAPPSLNLLSEIMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLL 395

                 ....*
gi 311088135 437 MSMHI 441
Cdd:MTH00150 396 LLLHW 400
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
1-441 1.96e-115

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 345.99  E-value: 1.96e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135   1 MLKIIVPTAMLLPVIWYSTNpmtWMNITLHSLTISLMSLFLFSQaDTNSNNFSPTFFSDPLSSPLLVLTMWLLPLTVVAS 80
Cdd:MTH00163   1 MLKFLFMLLFLIPLCFLKNS---WWLVQSLLFLLSFLFMLLFSL-SFYFSNISYFFGLDLLSFGLILLSFWICMLMILSS 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  81 QYHLTKEPWerKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPL 160
Cdd:MTH00163  77 ESVYKKNNY--SNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPL 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 161 LVALSYIQSSMGTLNLFMMTYwlqelpNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGG 240
Cdd:MTH00163 155 LVGIFYLYNNSGSLSFFLLNF------FGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGG 228
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 241 YGMMRITMILNPLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSLMGATTLMIAHG 320
Cdd:MTH00163 229 YGLLRVMSFFSKLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHG 308
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 321 LTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGLNM 400
Cdd:MTH00163 309 LCSSGLFCLANIIYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLS 388
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|.
gi 311088135 401 LVTATYSLYMLTTTQRGKSPYHMQNFSPSLTRENTLMSMHI 441
Cdd:MTH00163 389 FFSAAYSLYLYSYSQHGKYYSGLYSCSSGKVREYLLLFLHW 429
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
22-455 2.36e-105

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 320.39  E-value: 2.36e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  22 MTWMNITLHSLTISLMSLFLFSQADTNSNNFSPTFFSDPLSSPLLVLTMWLLPLTVVASQYHLTKEpwERKKHFLSTLIS 101
Cdd:MTH00205  19 KDWSFFSNLLLIGLFFSSFFFSNSFLMTSFISSSFSFDSLSLPLIMLSFWISLLMVLASYKVFKSN--KNSKLFTVSVIM 96
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 102 LQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTY 181
Cdd:MTH00205  97 LLLILILSFSVDNLLLFYITFEASLIPTLILILGWGYQPERLQASMYMMMYTLCASLPLLIGLFFLNSLNFSLSMFFNFP 176
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 182 WLQelpNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKSMAYPF 261
Cdd:MTH00205 177 LNF---SDFYLFLYWIFLMLAFLVKLPMYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLIRITSMLYKLNSNFSELF 253
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 262 LMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRT 341
Cdd:MTH00205 254 FSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSSGMFALANVNYERTNSRS 333
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 342 MLLARGLQALLPLMSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGLNMLVTATYSLYMLTTTQRGKSPY 421
Cdd:MTH00205 334 MLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISFLSGAYSLYLYSQSQHGKVSS 413
                        410       420       430
                 ....*....|....*....|....*....|....
gi 311088135 422 HMQNFSPSLTRENTLMSMHILPLLLLTLNPKILM 455
Cdd:MTH00205 414 QISSFLAISEREYYILILHWFPLNILILKLKIFI 447
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
1-454 1.92e-102

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 313.22  E-value: 1.92e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135   1 MLKIIVPTAMLLPvIWYSTNPMTWMNITLHSLTISLMSLFLFSQADTNSNNFSPTFFSDPLSSPLLVLTMWLLPLTVVAS 80
Cdd:MTH00014   1 MLKLIMPLISLLL-LPLIKYPWSWALTFSTLLLLSLFTLLNLYPMSAPYSMFTESLSSDMLSAPLITLTLWITALMILAS 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  81 Q--YHLTKEPwerkKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSL 158
Cdd:MTH00014  80 FkiFQNNKAP----KTFMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASL 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 159 PLLVALSYIQSSMGTLNLFMMTYWLqelPNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKL 238
Cdd:MTH00014 156 PLLMSILLIFYTNNSLSMLMSSMEP---PSIYLMNLWWLITILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKL 232
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 239 GGYGMMRITMILNPLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSLMGATTLMIA 318
Cdd:MTH00014 233 GGYGLLRMSSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIA 312
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 319 HGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGL 398
Cdd:MTH00014 313 HGLCSSALFALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLAI 392
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 311088135 399 NMLVTATYSLYMLTTTQRGKSPYHMQNFSPSLTRENTLMSMHILPLLLLTLNPKIL 454
Cdd:MTH00014 393 TSFLAAAYSLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILKPDLI 448
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
59-411 9.68e-74

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 239.98  E-value: 9.68e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  59 DPLSSPLLVLTMWLLPLTVVASqyhlTKEPWERKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGN 138
Cdd:COG1008   81 DGISLPLVLLTALLTPLAILAS----WNEIKKRPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLIGIWGG 156
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 139 QtERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPNSWSnYLLWTACIMAFMIKMPLYGLHMWLPK 218
Cdd:COG1008  157 E-RRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAELAAAPLPLTAQ-LLLFLAFFIAFAVKVPMFPFHTWLPD 234
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 219 AHVEAPIAGSMILAAILLKLGGYGMMRITMILNPL-TKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALV 297
Cdd:COG1008  235 AHVEAPTAGSVLLAGVLLKMGGYGLLRFALPLFPEaSAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 298 IVAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLIG 377
Cdd:COG1008  315 LLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVG 394
                        330       340       350
                 ....*....|....*....|....*....|....
gi 311088135 378 ELLVTMAAFSWSNTTIILTGLNMLVTATYSLYML 411
Cdd:COG1008  395 EFLVLLGAFQVNPWLAILAALGLILTAAYLLWMY 428
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
52-410 3.18e-70

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 230.71  E-value: 3.18e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  52 FSPTFFS-DPLSSPLLVLTMWLLPLTVVASqyhltkepWERK----KHFLSTLISLQLLLVMTFATTELIMFYILFESTL 126
Cdd:MTH00217  71 FGPVVFAvDGISIFFLILTALLTPICILIS--------WNSIkfliKEFLLCLLVIEILLMGVFTILDLVGFYILFEGIL 142
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 127 IPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNlfMMTYWLQELPNSWsNYLLWTACIMAFMIK 206
Cdd:MTH00217 143 IPMFLIIGIWGSREEKVQASYYFFFYTFIGSVFMLLGIFTLYSYAGTTD--YQALCCLKIEKEL-QYFIFLGFFLSLAIK 219
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 207 MPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKSMAYPFLM-LCLWGMIMTSLICLRQTDLKSL 285
Cdd:MTH00217 220 IPKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFSWPLLPEASEYFSPLIQtLSLLAIIYGSLTTCRQVDLKRI 299
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 286 IAYSSVSHMALVIVAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLS 365
Cdd:MTH00217 300 IAYSSVAHMGLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILMLLLVLA 379
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 311088135 366 NLALPPSINLIGELLVTMAAFSWSNTTIILTGLNMLVTATYSLYM 410
Cdd:MTH00217 380 NASIPLSCNFVGEFLSLLAAFEYSYIVGVLASLGMVLSAGYSIYL 424
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
59-459 8.87e-70

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 229.44  E-value: 8.87e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135   59 DPLSSPLLVLTMWLLPLTVVASQYHLTKepweRKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGN 138
Cdd:TIGR01972  76 DGISLLLVLLTALLTLLAILASWESIQK----RVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGG 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  139 QTeRLNAGLYFLFYTLTGSLPLLVALSYIQSSMGtlNLFMMTYWLQELPNSWSNYLLWTACIMAFMIKMPLYGLHMWLPK 218
Cdd:TIGR01972 152 PN-RIYAAMKFFLYTLAGSLLMLLAILGLYFLGG--GTFDLLELLNLPLPFGVQTWLFLAFFIAFAVKVPLFPLHTWLPD 228
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  219 AHVEAPIAGSMILAAILLKLGGYGMMRITMILNP-LTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALV 297
Cdd:TIGR01972 229 AHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFV 308
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  298 IVAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLIG 377
Cdd:TIGR01972 309 LLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVG 388
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  378 ELLVTMAAFSWSNTTIILTGLNMLVTATYSLYMLTTTQRG-KSPYHMQNFSPSLTRENTLMSMHILPLLLLTLNPKILMG 456
Cdd:TIGR01972 389 EFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLYKRVFFGeLSNPEVAEFPDLNGREIAVLAPLVVLILFLGLYPNPLLD 468

                  ...
gi 311088135  457 PTY 459
Cdd:TIGR01972 469 LTE 471
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
59-410 5.57e-69

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 227.78  E-value: 5.57e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  59 DPLSSPLLVLTMWLLPLTVVASqyhlTKEPWERKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGn 138
Cdd:PRK05846  81 DGISLLLVVLTALLTPLAVLAS----WEEIKKRVKFYMAALLWLEGGVIGVFAALDLLLFYVFFEAMLIPMYFLIGVWG- 155
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 139 QTERLNAGLYFLFYTLTGSLPLLVALSYI----QSSMGTLNLfmmTYWLQ-ELPNSWSnYLLWTACIMAFMIKMPLYGLH 213
Cdd:PRK05846 156 GKNRIYAATKFFLYTLLGSLLMLVAIIYLvvvyYNATGTFDI---ADLLNlPLPPGVQ-YWLFLAFFIAFAVKMPMFPLH 231
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 214 MWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKSMAYPFLM-LCLWGMIMTSLICLRQTDLKSLIAYSSVS 292
Cdd:PRK05846 232 TWLPDAHVQAPTAGSVLLAGILLKMGAYGLLRFSLPLFPDASHEFAPIIItLGVIAIIYGALVALAQTDIKKLIAYSSIS 311
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 293 HMALVIVAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPS 372
Cdd:PRK05846 312 HMGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGT 391
                        330       340       350
                 ....*....|....*....|....*....|....*...
gi 311088135 373 INLIGELLVTMAAFSWSNTTIILTGLNMLVTATYSLYM 410
Cdd:PRK05846 392 SGFVGEFLILLGSFQVNPVIAFIATTGLILAAVYSLWL 429
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
51-410 2.26e-68

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 225.71  E-value: 2.26e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  51 NFSPTFFS-DPLSSPLLVLTMWLLPLTVVASQ---YHLTKEpwerkkhFLSTLISLQLLLVMTFATTELIMFYILFESTL 126
Cdd:MTH00204  73 QWGPLVFAvDGVSLFFILLTTLLIPICILISWksiKFLFKE-------FLLCLLFLEVLLIGVFSVLDLLLFYILFEGIL 145
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 127 IPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTywLQELPNSWSNYLLwTACIMAFMIK 206
Cdd:MTH00204 146 IPMFLLIGIWGSREEKVRASYYFFFYTFAGSVFMLLGIFQLYSITGTTDYQILL--NIKLPLSIQKWLL-VGFFLSLAVK 222
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 207 MPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKSMAYPF-LMLCLWGMIMTSLICLRQTDLKSL 285
Cdd:MTH00204 223 IPQIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGFLRFSWPLFPAASEYFAPLiVMLSVIAVIYGSLTTCRQVDFKRL 302
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 286 IAYSSVSHMALVIVAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLS 365
Cdd:MTH00204 303 IAYSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIMLVLSLA 382
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 311088135 366 NLALPPSINLIGELLVTMAAFSWSNTTIILTGLNMLVTATYSLYM 410
Cdd:MTH00204 383 NMGFPLSCNFVGEFFSLLAAFEYSLGLGVLVTSGMVWSAAYSLYL 427
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
113-398 2.20e-66

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 214.48  E-value: 2.20e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  113 TELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPNSWSN 192
Cdd:pfam00361   2 NDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNSSGL 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  193 YLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKSMAYPFLMLCLWGMIMT 272
Cdd:pfam00361  82 LLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLG 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  273 SLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSLMGATTLMIAHGLTSSVLFCLANS-NYERVHSRTMLLARGLQAL 351
Cdd:pfam00361 162 SLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSvIYRRVHTRNIRDYGGLAKT 241
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 311088135  352 LPLMSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGL 398
Cdd:pfam00361 242 MPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGV 288
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
56-409 2.53e-58

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 199.76  E-value: 2.53e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  56 FFSDPLSSPLLVLTMWLLPLTVVASqYHLTKEpweRKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITR 135
Cdd:MTH00226  98 FAVDGISIYFIILTGFIVPCSILIS-WHSVKY---LTKSFLICMLILEFLLYAVFSVLDIFMFYILFEGVLIPMYLILGI 173
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 136 WGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPNSWSNYLlWTACIMAFMIKMPLYGLHMW 215
Cdd:MTH00226 174 WGSREEKMQAAYYFFFYTLIGSVLMLLCLFSLYNIHGTTDYLTLASCSHVVSEQTQKWI-FLGIFLAMAVKIPIFPFHIW 252
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 216 LPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPL-TKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHM 294
Cdd:MTH00226 253 LPKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLgAQNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHM 332
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 295 ALVIVAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSIN 374
Cdd:MTH00226 333 GLVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGN 412
                        330       340       350
                 ....*....|....*....|....*....|....*
gi 311088135 375 LIGELLVTMAAFSWSNTTIILTGLNMLVTATYSLY 409
Cdd:MTH00226 413 FIGEYLSILSSFNWNPIIGVFVCSGVILSAVYSFY 447
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
102-441 3.34e-46

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 164.69  E-value: 3.34e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 102 LQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALSYiqssmgtlNLFMMTY 181
Cdd:MTH00094  71 LILICLLFFVSSNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLFVYLK--------NFFFFSL 142
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 182 WLQELPNSWSNYLLwtaCIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRitmILNPLTKSMAYPF 261
Cdd:MTH00094 143 CYFDFFLSWEMFFI---LSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLR---ILGSLNFVYNNFW 216
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 262 LMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRT 341
Cdd:MTH00094 217 IIFSLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRL 296
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 342 MLLARGLQALLPLMSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGLNMLVTATYSLYMLTTTQRGKSPY 421
Cdd:MTH00094 297 IYFMNSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIVSSFMGKKFS 376
                        330       340
                 ....*....|....*....|
gi 311088135 422 HMQNFSPSLTRENTLMSMHI 441
Cdd:MTH00094 377 NFNNFNVGLSLPLVFMMFNM 396
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
1-387 2.44e-43

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 157.62  E-value: 2.44e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135   1 MLKIIVP--TAMLLPVIWYSTNPMTWMNItLHSLTISLMSLFLFSQADTN----------SNNFSPTFFSDPLSSPLLVL 68
Cdd:COG0651    6 ILPVLLPllAAALLLLLGRRRRLQRALSL-LASLALLALALALLLQVLAGgplvyalggwPAPFGIVLVADRLSALFLLL 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  69 TMWLLPLTVVASQYHLTkepWERKKHFLSTLISLQLL-LVMTFATTELIMFYILFESTLIPTLVIITRWGNQtERLNAGL 147
Cdd:COG0651   85 TALVALAVLLYSIGYMR---HERRGRRFYPLFLLLLAgMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTK-EALRAGL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 148 YFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPNSWSnYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAG 227
Cdd:COG0651  161 KYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLAELDPGLL-LAAFALLLVGFGIKAALFPLHFWLPDAYPAAPSPV 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 228 SMILAAILLKLGGYGMMRI-TMILNPLTKSMAYPFLMLC-LWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQT 305
Cdd:COG0651  240 SALLSGLLTKVGVYAILRVlTLLFGADPALFLGTLLLVLgLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGT 319
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 306 PWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLIGELLVTMAA 385
Cdd:COG0651  320 PLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAA 399

                 ..
gi 311088135 386 FS 387
Cdd:COG0651  400 LE 401
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
59-411 1.32e-40

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 151.72  E-value: 1.32e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  59 DPLSSPLLVLTMWLLPLTVVASqYHLTKEPweRKKHFLS-TLISLQLLLvmtFATTELIMFYILFESTLIPTLVIITRWG 137
Cdd:PRK12561  58 DGLSMPLVLLSGLITTLSIFAS-WKVTRKP--RLFYFLMlVLYSAQIGV---FLAQDLLLFFLMWELELVPVYLLISIWG 131
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 138 NQtERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPNSWSnYLLWTACIMAFMIKMPLYGLHMWLP 217
Cdd:PRK12561 132 GQ-KRLYAATKFILYTALASIFILVAGLALALSGDTFTFDLAELGAKSYPLALE-LLLYAGFLIAFGVKLPIFPLHTWLP 209
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 218 KAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKSMAYPFLM-LCLWGMIMTSLICLRQTDLKSLIAYSSVSHMAL 296
Cdd:PRK12561 210 DAHGEASAPVSMILAGVLLKMGGYALIRFNVQMLPDAHVYFAPALAiLGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGF 289
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 297 VIVAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLI 376
Cdd:PRK12561 290 VLLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMPKTFALFTASSMASLALPGMSGFV 369
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 311088135 377 GELLV-----TMAAFSWS--NTTIILTGLNMLVTATYSLYML 411
Cdd:PRK12561 370 SELTVflgitSSDVYSSTfrTITILLAAVGLILTPIYLLSML 411
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
59-430 5.22e-36

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 139.06  E-value: 5.22e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  59 DPLSSPLLVLTMWLLPLTVVASQYHLtkepwERKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGN 138
Cdd:PRK06473  78 DGLSLPLLVLNSLLTLIAIYSSDESI-----QRPRFYYSLLLLLNAGVSGAFLAQDLLLFFLFYELELIPLYLLIAIWGG 152
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 139 QtERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPNSwSNYLLWTACIMAFMIKMPLYGLHMWLPK 218
Cdd:PRK06473 153 Q-RRGYAATKFLLYTAISGILILVSFLGLVWLSGASSFDYEPLRSHTLPLS-TQLLLLAPILVGFGIKIPLVPFHTWLPD 230
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 219 AHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKSMAYPFL-MLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALV 297
Cdd:PRK06473 231 AHVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPWLaTWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 298 IVAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGL---QALLPLMSTWWLLASLSNLALPPSIN 374
Cdd:PRK06473 311 LLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLlnpERGLPITGSLMILGVMASAGIPGMVG 390
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 311088135 375 LIGELLVTMAAFSWSNTTIILTGLNMLVTATYSLYMLTTTQRGKSPYHMQNFSPSL 430
Cdd:PRK06473 391 FIAEFLVFRGSFPIFPVQTLLCMIGTGLTAVYFLLLVNRVFFGRLTAELSNLPRVL 446
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
58-411 1.37e-34

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 135.22  E-value: 1.37e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  58 SDPLSSPLLVLTMWLLPLTVVASqYHLTKEPwerkKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWG 137
Cdd:PRK02546  85 ADGLSMPLILLTGFITTLAVLAA-WPVTFKP----KLFYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWG 159
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 138 NQtERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPNSWSNyLLWTACIMAFMIKMPLYGLHMWLP 217
Cdd:PRK02546 160 GK-KRQYAATKFILYTAGSSLFILLAALAMAFYGDTPTFDMTALAAKDFGLGFQL-LCYAGLLIAYGVKLPIVPLHTWLP 237
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 218 KAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKSMAYPFL-MLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMAL 296
Cdd:PRK02546 238 DAHGEATAPVHMLLAGILLKMGGYALLRMNAGMLPDAHAQFAPLLiVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGF 317
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 297 VIVAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLI 376
Cdd:PRK02546 318 VLIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAMWTACSLASLALPGMSGFV 397
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 311088135 377 GELLV-----TMAAFSWSNTTII--LTGLNMLVTATYSLYML 411
Cdd:PRK02546 398 AELMVfvgfaTSDAYTLPFRVVVvfLAAVGVILTPIYLLSML 439
ndhD CHL00011
NADH dehydrogenase subunit 4
59-411 5.86e-34

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 133.15  E-value: 5.86e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  59 DPLSSPLLVLTMWLLPLTVVASqYHLTKEPweRKKHFLstlislqlLLVM------TFATTELIMFYILFESTLIPTLVI 132
Cdd:CHL00011  83 DGLSIGPILLTGFITTLATLAA-WPVTRNS--RLFYFL--------MLAMysgqigLFSSRDLLLFFIMWELELIPVYLL 151
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 133 ITRWGNQtERLNAGLYFLFYTLTGSLPLLVA---LSYIQSSMGTLNLFMMTYwlQELPNSWSnYLLWTACIMAFMIKMPL 209
Cdd:CHL00011 152 LSMWGGK-KRLYSATKFILYTAGGSIFLLIGvlgMGLYGSNEPTLNFETLAN--QSYPVALE-ILFYIGFLIAYAVKLPI 227
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 210 YGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKSMAYPFLMLC-LWGMIMTSLICLRQTDLKSLIAY 288
Cdd:CHL00011 228 IPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLVIVgAIQIIYAASTSLGQRNLKKRIAY 307
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 289 SSVSHMALVIVAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVhsRTMLLAR--GLQALLPLMSTWWLLASLSN 366
Cdd:CHL00011 308 SSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRI--RLVYLDEmgGIAIPMPKIFTMFSSFSMAS 385
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|..
gi 311088135 367 LALPPSINLIGELLV-----TMAAFSWSNTTII--LTGLNMLVTATYSLYML 411
Cdd:CHL00011 386 LALPGMSGFVAELIVffgiiTSQKYLLMPKILItfVMAIGMILTPIYLLSML 437
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
59-435 5.74e-32

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 127.52  E-value: 5.74e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  59 DPLSSPLLVLTMWLLPLTVVASQYHLtkepwERKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGN 138
Cdd:PRK07363  78 DGLSLPLLVLNSLLTWIAIYSIGENT-----ERPRLYYSLILLINGGIAGALLAQNLLLFFLFYELELIPFYLLIAIWGG 152
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 139 QtERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPNSwSNYLLWTACIMAFMIKMPLYGLHMWLPK 218
Cdd:PRK07363 153 E-KRGYASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSFDYDAISTQNLSLN-TQLILLTGLLLGFGIKIPLVPLHTWLPD 230
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 219 AHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKSMAYPflMLCLWGMIMT---SLICLRQTDLKSLIAYSSVSHMA 295
Cdd:PRK07363 231 AYTEASPAVAILLGGVLAKLGTYGLLRFGLQLFPQTWSLVAP--GLAIIGTISViygALSAIAQKDIKRMVAYSSIGHMG 308
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 296 LVIVAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQAL---LPLMSTWWLLASLSNLALPPS 372
Cdd:PRK07363 309 YILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGLMNPirgLPLTSALLVLAGMASAGIPGL 388
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 311088135 373 INLIGELLVTMAAFSWSNTTIILTGLNMLVTATYSLYMLTTTQRGKSPYHMQNFSPSLTRENT 435
Cdd:PRK07363 389 VGFVAEFIVFQGSFSTFPIPTLLCIVASGLTAVYFVILLNRTCFGRLDNKLAYYPKVLWSEKI 451
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
55-406 3.94e-26

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 110.74  E-value: 3.94e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  55 TFFSDPLSSPLLVLTMWLLPLTVVASQyhLTKEPWERKKHFLsTLISLQLLLVMTFaTTELIMFYILFESTLIPTLVIIT 134
Cdd:PRK08375  72 ELRADSLSALFLLVTSILAIAALLYAI--GYGEHRQTRFYAL-FLLLLAGLLGALL-TADLFNLFVFLEIMSLSSYALVA 147
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 135 RWGNQtERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPnswsnyLLWTA---CIMAFMIKMPLYG 211
Cdd:PRK08375 148 MGGDR-RALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGALAENP------TVVTAfgfVLLALALKAAVFP 220
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 212 LHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITM----ILNPLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIA 287
Cdd:PRK08375 221 LHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYFtvfgGDFRFALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLA 300
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 288 YSSVSHMALVIVAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNL 367
Cdd:PRK08375 301 YSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLGRRMPLTAAAFAVASLSLI 380
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 311088135 368 ALPPSINLIGELLVTMAAFS---WSNTTIILTGlnMLVTATY 406
Cdd:PRK08375 381 GVPPTSGFVSKWYLVVGAVEagqWLVLAVLLAS--SLLALLY 420
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
59-408 6.58e-23

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 101.20  E-value: 6.58e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  59 DPLSSPLLVLTMWLLPLTVVASQYHLTKEpwERKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGN 138
Cdd:PRK12667  81 DLLGALLGLLTALVMFLILIYSYWYLEHE--SGPEWYYTLLLGLEAGMLGILLTGDAFNLFVMLEVLSISAYGLVAYYRD 158
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 139 QTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLN-----LFMMTYWLQELPNSWSNYLLWTACIMA-----FMIKMP 208
Cdd:PRK12667 159 RGDAVEAAIKYALIGAVGTTLYFLALAFLYATFGTLNmadlsAKIRGLSFPLTGGLAGNPPLALGVALAlalwaFTIKAA 238
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 209 LYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRI-------TMILNPLTKSMAYPFLMLCLWGMIMTSLICLRQTD 281
Cdd:PRK12667 239 IFPNHFWLPDAHPAAPSPVSAMLSGLVVNVGAYAIIRFlytifgiSPSLIDFRAALSPILIILGAVSAIIGALMMVVQKD 318
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 282 LKSLIAYSSVSHMALVIVAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLL 361
Cdd:PRK12667 319 VKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFLI 398
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*..
gi 311088135 362 ASLSNLALPPSINLIGELLVTMAAFSWSnttIILTGLNMLVTATYSL 408
Cdd:PRK12667 399 GALSLVGIPPLNGFFSKLLLFNALLESG---FYLPALVLLIASAISL 442
Oxidored_q5_N pfam01059
NADH-ubiquinone oxidoreductase chain 4, amino terminus;
1-109 3.57e-20

NADH-ubiquinone oxidoreductase chain 4, amino terminus;


Pssm-ID: 366442 [Multi-domain]  Cd Length: 110  Bit Score: 85.27  E-value: 3.57e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135    1 MLKIIVPTAMLLPVIWYSTNPMTWMNITLHSLTISLMSLFLFSQADTNS-NNFSPTFFSDPLSSPLLVLTMWLLPLTVVA 79
Cdd:pfam01059   1 MLKILLPTLMLIPLTFLSKPKWLWTTSTLYSLLLALLSLLLLNNPSNFSwSNLSYFLGIDSLSYPLIILSCWLLPLMILA 80
                          90       100       110
                  ....*....|....*....|....*....|
gi 311088135   80 SQYHLTKEPWERKKHFLSTLISLQLLLVMT 109
Cdd:pfam01059  81 SQKHLKSEPNNRQRTFIFLLILLQLFLILT 110
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
206-398 7.57e-17

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 82.67  E-value: 7.57e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 206 KMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKSMAYPFLMLC--LWGMIMTSLICLRQTDLK 283
Cdd:PRK06458 227 KVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRYYILIDAAIGSDFPGRLLLIfgLLSVLVAAFFLLRQRDIK 306
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 284 SLIAYSSVSHMALVIVAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLAS 363
Cdd:PRK06458 307 RLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPLTGWGLMLGA 386
                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 311088135 364 LSNLALPPSINLIGELLVTMAAFS---WSNTTIILTGL 398
Cdd:PRK06458 387 LAIAGMPPFGVFISEFLILTAGLArgpLLIAILLLLLL 424
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
96-327 1.07e-16

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 82.32  E-value: 1.07e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  96 LSTLISLQLLLVM----TFATTELIMFYILFESTLIPTLVIITRwGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSM 171
Cdd:PRK12665 110 VSIFLPTYLILVAgvsnAFLAGDLFNLYVGFEILLVASYVLLTL-GATAARVRAGVTYVMVSMVSSLLFLIGIALVYAAT 188
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 172 GTLNLFMMTYWLQELPnSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILN 251
Cdd:PRK12665 189 GTLNMADLAVRLDELP-SGTRTALFAVLLVAFGIKAAVFPLSFWLPDSYPTAPAPVTAVFAGLLTKVGVYAIIRTHTLLF 267
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 311088135 252 PlTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSLMGATTLMIAHGLTSSVLF 327
Cdd:PRK12665 268 P-GGGLDTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLF 342
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
107-344 2.19e-16

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 80.74  E-value: 2.19e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 107 VMTFATTELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQEl 186
Cdd:MTH00062  85 ILCFCVNNSLLFWFFYELSIIPLLYLLFSESPYSERYLASWYFLGYLLLTSLPLLLCLLYLSLVNGSFNFSDWGSDDSV- 163
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 187 pNSWSNYLLWtaciMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTksmAYPFLMLCL 266
Cdd:MTH00062 164 -SLIVYYVLS----FMFITKVPLFPFHTWLPIVHAEASSPVSIFLSGYIMKLGLLGVYRFCGFIFSGS---FLGYLFLCC 235
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 311088135 267 WGMIMTSLICLRQTDLKSLIAYSSVSHMaLVIVAILIQTPWSLMGATTLM-IAHGLTSSVLFCLANSNYERVHSRTMLL 344
Cdd:MTH00062 236 LFSVFFLITACSELDGKRWLAFLSLSHI-LVPVLGLFVGDWSSINLSFFYcLGHGLSAGLVFLLLWCFYEVSGSRNWVL 313
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
104-327 8.40e-16

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 79.41  E-value: 8.40e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 104 LLLVMTFA--TTELIMFYILFE-STLIPTLVIITRwgNQTERLNAGLYFLFYTLTG------SLPLLVALSYIQSSMGTL 174
Cdd:PRK08676 111 LLSVITFAffSDNLALFWIFAElTTVFSAMLIAIL--SARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTL 188
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 175 NLFMMTYWLQELPNSWSnYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPlT 254
Cdd:PRK08676 189 NWTELAAHASLLSPSVL-GASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQ-S 266
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 311088135 255 KSMAYPFLMLCLWGMIMTSLIC---LRQTDLKSLIAYSSVSHMALVIVAILIQTPWSLMGATTLMIAHGLTSSVLF 327
Cdd:PRK08676 267 GAAEQFSNVLIGLGIFSIAVAAfsmLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLF 342
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
52-408 2.27e-15

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 78.62  E-value: 2.27e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  52 FSPTFFSDPLSSPLLVLTMWLLPLTVVASQYHLTKEPWERKKHFLSTLISLQLL-LVMTFATTELIMFYILFESTLIPTL 130
Cdd:PRK08667  69 LDITFHIDRLAAFFIILIGLVSLCVAIYSLGYNEHMSSNERANLLSALTALFILsMLGVVASANTFSFLFFWEIMALSSF 148
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 131 VIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPnswsnyLLWTACIMAFMIKMPLY 210
Cdd:PRK08667 149 FLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAGILS------LVFLLLFLGFGIKAGII 222
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 211 GLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRItmILNPLTKSMAYPFLMLCLwGMIMTSL---ICLRQTDLKSLIA 287
Cdd:PRK08667 223 PFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRF--LMDVLSPELWWGVLILLA-GSISALLgviYALKEHDLKGLLA 299
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 288 YSSVSHMALVIVAILIQTPWSLMGATTLM-----------IAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMS 356
Cdd:PRK08667 300 YSSIENIGIILMGIGLYVIFGVYGLDTLAllalggalfhsLNHALFKSLLFLTAGSVVHATGTRNIEKMGGLVKLMPYTS 379
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|...
gi 311088135 357 TWWLLASLSNLALPPSINLIGELLVTMAAF-SWSNTTIILTGLNMLVTATYSL 408
Cdd:PRK08667 380 ALFLVGAVSIAALPPFNGFASELLLYESFFqSFSVADPLIKILLFSVLAIFAL 432
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
110-327 5.03e-13

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 71.18  E-value: 5.03e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 110 FATTELIMFYILFESTLIPTLVIITrWGNQTERLNAGLYFLFYTLtGSLPLLVALSYIQSSMGTLNLFMMtywLQELPNS 189
Cdd:PRK08668 115 FLANDLLTLYIFWEIMTFSSFMMVP-MGKKESRKASLKYFVLSAI-GAYAMLYAIFLIYAKTGTFDFADI---SQGLIND 189
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 190 WSNYLLWTAC--IMAFMI-KMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMrITMILNPLTK----------- 255
Cdd:PRK08668 190 TSTGFALIVFlfLLAFGVaKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSKLGAYGFL-LVLYVLPGTKlfsefgtyrgv 268
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 311088135 256 -SMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSLMGATTLMIAHGLTSSVLF 327
Cdd:PRK08668 269 pLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFF 341
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
10-327 1.57e-12

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 68.99  E-value: 1.57e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  10 MLLPVIWYSTNPMTWMNITLHSLTISLMSLFLFSQADTNSNnFSPTFFSDPLSSPLLVLTMWLLPLTVVASQYHLTKEPW 89
Cdd:COG1007   21 LLLDLFLPRRSRRLLAGLALLGLLLALALLLLALGGGTGTA-FGGMFVVDGFALFFKLLILLAALLVLLLSRDYLERRGL 99
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  90 ERKKHFLSTLISLQLLLVMTFATtELIMFYILFESTLIPTLVIITRWGNQTERLNAGL-YFLFYTLTGSLpLLVALSYIQ 168
Cdd:COG1007  100 LRGEFYALLLFATLGMMLMASAN-DLLTLFLGLELLSLSLYVLVAFRRDDRRSSEAALkYFLLGALSSGF-LLYGISLLY 177
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 169 SSMGTLNLFMMTYWLQELPNSwsNYLLWTACIM---AFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILlKLGGYGM-M 244
Cdd:COG1007  178 GATGSLNLAGIAAALAAGGAN--SPLLLLGLVLvlaGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAP-KIAAFAAlL 254
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 245 RITMI-LNPLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSLMGATTLMIAHGLTS 323
Cdd:COG1007  255 RLLVEaFPGLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAYLFMN 334

                 ....
gi 311088135 324 SVLF 327
Cdd:COG1007  335 LGAF 338
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
52-330 1.79e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 69.21  E-value: 1.79e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  52 FSPTFFSDPLSSPLLVLTMWLLPLTVVASQYHLTKEpweRKKHFLSTLISLQLLLVM-TFATTELIMFYILFESTLIPTL 130
Cdd:PRK07691  69 FGIVFVADMFAALLVLTSSIITFLVILYSFQTIGIE---RERYYYYPSVLFMLAGVNgAFLTGDIFNLFVFFEVMLMASY 145
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 131 VIITRWGNQTErLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPNSWSNYLLWTAC--IMAFMIKMP 208
Cdd:PRK07691 146 VLIVIGGTKIQ-LRESIKYVLINVVSSAFFVVAVAILYSVVGTLNMADISVKIAELSAGQTGLITVVAIlfLFVFATKAG 224
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 209 LYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRI-TMILNPLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIA 287
Cdd:PRK07691 225 LFPLYFWLPGSYYAPPIAIAALFGALLTKVGVYAIARTfTLFFSHDTSFTHYLILILALLTIIFGVIGAVAYFDIKKIII 304
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 311088135 288 YSSVSHMALVIVAILIQTPWSLMGATTLMIAHGLTSSVLFCLA 330
Cdd:PRK07691 305 YNIMIAVGVILVGVAMMTESGMIGAIYYLIHDMIVKAALFLLI 347
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
59-332 3.69e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 68.22  E-value: 3.69e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  59 DPLSSPLLVLTMWLLPLTVVASQYHLTKEPWERKkhfLSTLISLQLL----LVMTFATTELIMFYILFESTLIPTLVIIT 134
Cdd:PRK12662  75 DILSATMLVLVNFIAVMSVLYGIYPNRKEISVNK---IPSFYSAFLLclggLLGILVSNDVFNIYVFLEISSISSYVLVA 151
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 135 RwGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPNSWSNYLLWTACIMAFMIKMPLYGLHM 214
Cdd:PRK12662 152 M-GRDKKALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLNMGDMFLIIQDLPTNRAIQIGVLFIMVGLFIKAALFPFHK 230
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 215 WLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMI-----LNPLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYS 289
Cdd:PRK12662 231 WLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVYDvfkanFVFTTLPFNNVFMILAALAIVFGSVLAILSKDIKRIFAYS 310
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 311088135 290 SVSHMALVIVAILIQTPWSLMGATTLMIAHGLTSSVLFCLANS 332
Cdd:PRK12662 311 SISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGS 353
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
52-312 8.59e-12

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 66.90  E-value: 8.59e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  52 FSPTFFSDPLSSpLLVLTMWLLPLtvVASQYHLTKEPWERKKHFLSTLISLQLLLVM-TFATTELIMFYILFESTLIPTL 130
Cdd:PRK12663  69 FGIQFTGDSLSA-LMVTTASFVAT--AIMAYGFGDIEHSGRRYGFPPFILLLMAGVIgSFLTGDLFNLYVWFEVMLIASF 145
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 131 VIITrWGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPNSWSNYLLWTACIMAFMIKMPLY 210
Cdd:PRK12663 146 VLIT-LGQEREQLRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLNMAHIAMRLNDMGDTATLTTIALLFLLAFGMKAALF 224
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 211 gLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKSMAYPFL--MLCLwGMIMTSLICLRQTDLKSLIAY 288
Cdd:PRK12663 225 -PFMWLPAAYHTPNTEVAALFAALLTKVGIYALIRVFTLLFPQERELLHPLLatMAAI-TMVIGALGALAYKDIRRIAGY 302
                        250       260
                 ....*....|....*....|....
gi 311088135 289 SSVSHMALVIVAILIQTPWSLMGA 312
Cdd:PRK12663 303 QVISSIGFILLGLALGTPAGINGA 326
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
102-327 1.78e-11

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 65.94  E-value: 1.78e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 102 LQLLLVM----TFATTELIMFYILFESTLIpTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLF 177
Cdd:PRK08377 113 LFLLLMLgatgMIATGDIFNLFVFMEITAI-TAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGTLNMA 191
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 178 MMTYWLQELpNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLT--K 255
Cdd:PRK08377 192 HIAQLAGTI-DPTVAQVGLALLIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLMQNANgwS 270
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 311088135 256 SMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSLMGATTLMIAHGLTSSVLF 327
Cdd:PRK08377 271 SVLKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLF 342
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
113-402 2.10e-11

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 65.77  E-value: 2.10e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 113 TELIMFYILFESTLIPTLVIITRWGNQtERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMtywlQELPNSwSN 192
Cdd:PRK06525 133 STLLGLLLFFEITGLCSWALISYYQSP-KALRSALKALLITHIGSLGLYLAAATLFLQTGTFALSAL----SGLHGS-LK 206
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 193 YLLWTACIMAFMIKMPLYGLHMWLPKAhVEAPIAGSMIL-AAILLKLGGYGMMRITMILNPLTKSMAYPFLMLCLWGMIM 271
Cdd:PRK06525 207 YLVFLGILFAAWGKSAQLPFYSWLPDA-MEAPTPASAYLhAASMVKVGVYIFARAIQSMGPIPHVIGYVGAVMAIVTLLY 285
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 272 TSLICLRQTDLKSLIAYSSVSHMALVIVAILIQ---TPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGL 348
Cdd:PRK06525 286 GFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAilgSRLALEGSIAYIFNHAFAKSLFFLVAGALSYSCGTRLLPRLRGV 365
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 311088135 349 QALLPLMSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGLNMLV 402
Cdd:PRK06525 366 LKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIFAAGFELSVEYWILLPAMVLL 419
PRK12650 PRK12650
DUF4040 family protein;
104-330 2.23e-11

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 66.22  E-value: 2.23e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 104 LLLVMTfatTELIMFYILFESTLIPTLVIITRWGNQTErlNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYwl 183
Cdd:PRK12650 124 LLLVLA---DDVVVLFVAWELVSLASFFLIARSGSGGE--AGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILH-- 196
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 184 qelPNSWSNYLLWTACI-----MAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITmilnPLTKSMA 258
Cdd:PRK12650 197 ---SDVWAEKPGLTTVVavliaVAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFS----PVFHDVA 269
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 311088135 259 YPFLMLCLWGM---IMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSLMGATTLMIAHGLTSSVLFCLA 330
Cdd:PRK12650 270 VWNWLLIIVGMitaLMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLI 344
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
16-427 3.52e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 64.84  E-value: 3.52e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  16 WYSTNPMTWMNITLHSLTISLMSLFLFSQAD------TNSNNFSPTFFSDPLSSPLLVLTMWLLPLTVVASQYHLTKEPW 89
Cdd:PRK06589  33 DSFIRNFLLITISIFFFGNILLIDLLFLKGIraqfelMDFGNYSIGLHLEPLGLIFLLLIGFLWICALLYTPKYLAINNI 112
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  90 ERKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITrWGNQTERLNAGLYFL-FYTLTGSLPLLVALSYIQ 168
Cdd:PRK06589 113 DSSSRFLFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLIG-HTRNNISLSGGYKYLkILMISALLLFLPAVILIY 191
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 169 SSMGTLNLFMMTYWlqelpnSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITM 248
Cdd:PRK06589 192 TKTGNLDFVSGGLF------SKNQSIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALLHAVIVVKTGLFCIYKILL 265
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 249 ILNPLTK-----SMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSLMGATTLMIAHGLTS 323
Cdd:PRK06589 266 YIFGLSYlqrifAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLVSHSFAK 345
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 324 SVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSN--TTIILTGLNML 401
Cdd:PRK06589 346 ICLFYSMGSIYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQpwLSIIVMLVVIA 425
                        410       420
                 ....*....|....*....|....*.
gi 311088135 402 VTATYSLYMLTTTQRGKSPYHMQNFS 427
Cdd:PRK06589 426 SSILSALYLLKILSSIYKPSLSENSF 451
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
51-339 5.87e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 64.20  E-value: 5.87e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  51 NFSPTFFSDPLSSPLLVLTMWLlplTVVASQYhltkePWERKK--HFLSTLISLQLLLVMTFATTELIMFYILFESTLIP 128
Cdd:PRK07234  58 NFGVTLRADALSGYFILTNALV---TLAVIFY-----CWESAKtrFFYAQLLILHGSVNAAFVCADLISLYVALEVLSIA 129
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 129 TLVIITrWGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLfmmtywlQELPNSWSNYLlwTACIMAFMIKMP 208
Cdd:PRK07234 130 TFLLVA-YPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAF-------SGLATADPEAF--ALIALGLLVKGG 199
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 209 LYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITMILNPLTKSMAYPFLMLCLWGmimtSLICLRQTDLKSLIAY 288
Cdd:PRK07234 200 IFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLDLIVRIFGVGTALLG----VLFALLEKDLKRMLAF 275
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 311088135 289 SSVSHMALVIVAILIqtpwslmgATTLMIAHGLTSSVLFCLANSNYERVHS 339
Cdd:PRK07234 276 STISQLGFILAAPLV--------GGLYALAHGLVKSTLFLCAGALPSRNFT 318
PRK12666 PRK12666
putative monovalent cation/H+ antiporter subunit D; Reviewed
59-330 1.13e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237166 [Multi-domain]  Cd Length: 528  Bit Score: 63.33  E-value: 1.13e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  59 DPLSSPLLVLTMWLLPLTVVASQYHltkepWERKKHFLSTLISLQLLLVM-TFATTELIMFYILFESTLIPT--LVIitr 135
Cdd:PRK12666  79 DRLSALMLLLTALLALAALLYALAG-----WDRAGPHFHALFQFQLMGLNgAFLTGDLFNLFVFFEVLLAASygLLL--- 150
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 136 WGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPNSwSNYLLWTACIM---AFMIKMPLYGL 212
Cdd:PRK12666 151 HGSGRARVRAGLHYVAINLVASSLFLIGVGLIYGVTGTLNMADLAQRIAQLPAA-DRALLEAGAALllvVFLIKAAMWPL 229
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 213 HMWLPKAHVEA--PIAGsmiLAAILLKLGGYGMMRI-TMILNPLTKSMAYPFLMLCLWGMIMTSLI----CLRQTDLKSL 285
Cdd:PRK12666 230 NFWLPPAYAAAsaPVAA---LFAIMTKVGIYAILRLsTLLFGPEAGASAGFGQDWLLPGGLATLAFgaigVLAAQRLRRL 306
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 311088135 286 IAYSSVSHMALVIVAILIQTPWSLMGATTLMIAHGLTSSVLFCLA 330
Cdd:PRK12666 307 AAYLVLVSSGTLLAAIGLGNPAATAAALYYLVHSTLAAAALFLLA 351
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
115-404 1.75e-10

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 63.40  E-value: 1.75e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 115 LIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMtYWLQELPNSWSNYL 194
Cdd:PRK12647 117 LITLFVFWELTSITSFLLIGFNHEREAARRAALQALLVTGGGGLALLAGLILLGNVTGTYSLSEL-LASGDVIREHPLYL 195
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 195 LWTACIM--AFMiKMPLYGLHMWLPKAhVEAPIAGSMIL-AAILLKLGGYGMMRitmiLNPLTKSMAYPFLMLCLWG--- 268
Cdd:PRK12647 196 AILLLVLggAFT-KSAQFPFHFWLPNA-MEAPTPVSAYLhSATMVKAGIYLLAR----LNPVLGGTPLWQTILPLFGglt 269
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 269 MIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGL 348
Cdd:PRK12647 270 MLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLVAHSLYKGALFMVAGIIDHETGTRDITKLGGL 349
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 349 QALLPLMSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGL----NMLVTA 404
Cdd:PRK12647 350 RRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALLEAPLWSLILTVAavlgNALMVA 409
PRK12646 PRK12646
DUF4040 family protein;
116-357 2.68e-09

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 59.38  E-value: 2.68e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 116 IMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMmtywLQELPNSWSNYLL 195
Cdd:PRK12646 133 ILMYVFWELTSVSSFLLISYWYNNGDSQFGAIQSFMITVFGGLALLVGFIMLYIMTGTNNITE----ILGQADHIKNHGL 208
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 196 WTACIMAFMI----KMPLYGLHMWLPKAhVEAPIAGSMIL-AAILLKLGGYGMMRITMILNpLTKSMAYPFLMLCLWGMI 270
Cdd:PRK12646 209 FIPMIFMFLLgaftKSAQFPFHIWLPRA-MAAPTPVSAYLhSATMVKAGIFLLFRFTPLLG-LSNMYIYIVTFVGLITML 286
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 271 MTSLICLRQTDLKSLIAYSSVSHMALVIVAI-----LIQTP---------WSLMGATTLMIAHGLTSSVLFCLANSNYER 336
Cdd:PRK12646 287 FGSITALKQWDLKGILAYSTISQLGMIMAMVgigggYAQHQqdaiasiyvFVLFAALFHLMNHAIFKCALFMGVGIIDHE 366
                        250       260
                 ....*....|....*....|.
gi 311088135 337 VHSRTMLLARGLQALLPLMST 357
Cdd:PRK12646 367 AGTRDIRILSGMRQLFPKMNL 387
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
63-292 3.40e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 58.96  E-value: 3.40e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  63 SPLLVLTMWLLPLTVVASQYHLTKEPWERKKHFlsTLISLQLLLVMTFATT-ELIMFYILFESTLIPTLVIITRWGNQTE 141
Cdd:PRK08376  92 GAFMALIATIVSFLAVLYSISYMKHDTGLDKYY--TLILLLELGMLGMAITgDLFNFFVFLEIMSIASYALVAFRNDTWE 169
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 142 RLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLFMMTYWLQELPNSWSNYLLwTACIMAFMIKMPLYGLHMWLPKAHV 221
Cdd:PRK08376 170 AIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMAYLAVKMSENPTVVAKIAL-ALFIAGLAMKSGAVPVHMWLPDAYP 248
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 311088135 222 EAPIAGSMILAAIllKLGG-YGMMRITMILNPLTKSMA---YPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVS 292
Cdd:PRK08376 249 AAPSSISAMLLVI--KQAGlYALARVLFSIYGPAINLAtvgWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVS 321
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
212-342 2.49e-08

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 56.44  E-value: 2.49e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 212 LHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITM-ILNPLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSS 290
Cdd:PRK06521 229 LHVWLPRAHPAAPSHVSALMSGVMLKVAIYGILRVVFdLLGAPGWWWGVLVLALGAISAVLGVLYALAEHDLKRLLAYST 308
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 311088135 291 VSHMALVIVA-----ILIQTPWSLMGATTLMIA------HGLTSSVLFCLANSNYERVHSRTM 342
Cdd:PRK06521 309 IENIGIIFVGlglamVFIAYGMPLLAALALTAAlyhllnHALFKSLLFLGAGAVLHATGTRDM 371
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
1-323 3.16e-08

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 55.60  E-value: 3.16e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135   1 MLKIIVPTAMLLPVIWYSTNPMTWMNITLHSLTISLMSLFLFSQADTNSNNFSPTFFSDPLSSPLLVLTMWLLPLTVVAS 80
Cdd:PRK05777  14 ELILLGAAVVLLLIDAFVRRHSRRATLAVLALLLALVALLFVLGAAGGGTAFGGMLVVDGFALFLKGLILLASLLALLLA 93
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  81 QYHLTKEpwERKKHFLSTLISLQLLLVMTFATtELIMFYILFESTLIPTLVIITRWGNQTERLNAGL-YFLFYTLTGSLp 159
Cdd:PRK05777  94 RPYLEDR--GRGEFYLLVLFALLGMMVMVSAN-DLLTLFLGLELLSLPLYALAALRRDRRRSLEAAIkYFVLGALASGF- 169
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 160 LLVALSYIQSSMGTLNLFMMTYWLQElpNSWSNYLLWTACIM---AFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILl 236
Cdd:PRK05777 170 LLYGMSLLYGATGSLSFAGIAKALAD--GSGNSLLLLFGLVFllvGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAP- 246
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 237 KLGGYGM-MRI-TMILNPLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSLMGATT 314
Cdd:PRK05777 247 KIAAFAVlLRLlVVAFGGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLF 326

                 ....*....
gi 311088135 315 LMIAHGLTS 323
Cdd:PRK05777 327 YLLAYLFMT 335
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
156-398 3.84e-08

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 55.60  E-value: 3.84e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 156 GSLPLLVALSYIQSSMGTLNLFMMTYWLQELPnswSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAIL 235
Cdd:PRK08042 146 GTLLLAIACWLLWQRYGTLDLRLLDMRMQQLP---LGSDIWLLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTVV 222
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 236 LKLGGYGMMRITMILNPLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALV-------IVAILIQTP-- 306
Cdd:PRK08042 223 MKIGLLGILTLSLLGGNAPLWWGVALLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIIllglgagVTGIALEQPal 302
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 307 --WSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMSTWWLLASLSNLALPPSINLIGELLVTMA 384
Cdd:PRK08042 303 iaLGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQS 382
                        250
                 ....*....|....
gi 311088135 385 AFSWSNTTIILTGL 398
Cdd:PRK08042 383 FFKLSNSGAFVARL 396
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
129-327 2.32e-07

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 52.97  E-value: 2.32e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 129 TLVIitrWGNQTER-LNAGL-YFLFYTLTGSLpLLVALSYIQSSMGTLnLFMMTYWLQELPNswsnyllWTACImAFMIK 206
Cdd:PRK12668 130 TFLV---WARGTKAaVRAGFrYLLVHVLGGVL-LLAGILLHYAETGSF-AFGAIAGLGGTAA-------WLILI-GFGVN 196
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 207 MPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRitmilnpltksmAYPFLMLCLW-GMIMT---SLICLRQTDL 282
Cdd:PRK12668 197 AAFPPLHAWLPDAYPEATVTGSVFLSAFTTKTAVYALAR------------AFPGTELLIYiGAAMAvygVFFALLENDL 264
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 311088135 283 KSLIAYSSVSHMALVIVAILIQTPWSLMGATTLMIAHGLTSSVLF 327
Cdd:PRK12668 265 RRLLSYHIVSQVGYMVAGIGIGTALAINGAVAHAFNHILYKGLLF 309
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
104-327 5.38e-07

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 52.08  E-value: 5.38e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 104 LLLVMTfatTELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLfmmTYWL 183
Cdd:COG1009  125 LGLVLS---DNLLLLFVFWELVGLCSYLLIGFWYEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNF---SELL 198
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 184 QELPNSWSNYLLWTACIMAF---MIKMPLYGLHMWLPKAhVEAPIAGSMIL-AAILLKLGGYGMMRITMILnpltkSMAY 259
Cdd:COG1009  199 AAAPTILSSPLLTLILLLLLlgaFGKSAQFPLHFWLPDA-MEGPTPVSALLhAATMVKAGVYLLARLSPLF-----ALSP 272
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 311088135 260 PFLMLCLW----GMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQtpwSLMGATTLMIAHGLTSSVLF 327
Cdd:COG1009  273 VWLTVVAIigaiTALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVG---AYVAALFHLLTHAFFKALLF 341
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
115-327 7.09e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 51.85  E-value: 7.09e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 115 LIMFYILFESTLIPTLVIItrwGNQTERLN---AGLYFLFYTLTGSLPLLVALSYIQSSMGTlnlfmmtYWLQELPNSWS 191
Cdd:PRK12644 128 LLLLYVFWELTTVLSFLLI---GHYAERAAsrrAALQALLVTTAGGLAMLVGIIILGQAAGT-------YRLSELLADPP 197
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 192 NYLLWTACIMAFMI----KMPLYGLHMWLPKAhVEAPIAGSMIL-AAILLKLGGYGMMRITMILNPLTkSMAYPFLMLCL 266
Cdd:PRK12644 198 TGPAVSVAVVLILVgalsKSAIVPFHFWLPGA-MAAPTPVSAYLhAAAMVKAGIYLVARLAPGFADVP-VWRPTVLVLGL 275
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 311088135 267 WGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSLMGATTLMIAHGLTSSVLF 327
Cdd:PRK12644 276 ATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLAMLLAHALFKAALF 336
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
80-307 1.16e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 47.66  E-value: 1.16e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  80 SQYHLTKEPweRKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLP 159
Cdd:MTH00208 127 SHYYMSNDP--NKNAFFRLLIIFLLNMLILTSSNNLFLLFIGWEGVGFLSFLLISWWTTRNDANSSALQAVIYNRIGDIG 204
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 160 LLVALSYIQSSMGTLNLFMMTYwLQELPNSWSNYLLWTAcIMAFMIKMPLYGLHMWLPKAhVEAPIAGS-------MILA 232
Cdd:MTH00208 205 IILFLSLSLINFNSWNLNEILS-LNNSNSFLINILLFGI-LLAAAGKSAQFGLHPWLPAA-MEGPTPVSallhsstMVVA 281
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 311088135 233 AILLklggygMMRITMILNPLTKsmaypFLMLCLWGMIMTSL----ICLRQTDLKSLIAYSSVSHMALVIVAILIQTPW 307
Cdd:MTH00208 282 GVFL------LIRTSPLISNSPW-----FLSLCLILGSLTALfaasTAISQHDIKKIIAYSTTSQLGLMVVAIGLNQPN 349
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
112-327 1.79e-05

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 46.56  E-value: 1.79e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 112 TTELIMFYILFESTLIPTLVIITRWGNQTERLNAGL-YFLFYTLTGSLPLL-VALSYIQSSMGTLNLFMMTYWLQELPNS 189
Cdd:MTH00196  12 SSNWLSVYLAIELQTLSLFILIAQNRGSGYSAEAGLkYFVLGALSSGLFLFgCALLCGTTGGLHLSYINLVLNSGQSFSS 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 190 WSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAaILLKLGGYGMmrITMILNPLTKsmaypFLMLCLWGM 269
Cdd:MTH00196  92 VSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLA-IVPKLGIFSI--LVSIGLNVNI-----LLIGGLFSL 163
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 311088135 270 IMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSLMGATTLMIAHGLTSSVLF 327
Cdd:MTH00196 164 FVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFESIQASLVYLFIYIIMSICVF 221
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
89-301 2.55e-04

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 43.24  E-value: 2.55e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  89 WERKKHFLSTLISLQLL-LVMTFATTELIMFYILFESTLIPTLVIITRWGNQTErlnAGLYFLFYTLTGSLPLLVALSYI 167
Cdd:PRK06459  67 YDHYGKWLSSLYILTILgMAIVLTSDNYLLFLAGWEIMTIPSYVAIALTKKNKR---PAFVFMAFGELSTVLILAGFAWA 143
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 168 QSSMGTLNLfmmtywlQELPNSWSNYLLwtacIMAFMIKMPLYGLHM--WLPKAHVEAPIAGSMILAAILLKLGGYGMMR 245
Cdd:PRK06459 144 FIISGTTNF-------SYLPSPVPLILA----SFGFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTLMGVYGILK 212
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 311088135 246 ITMILNPLTKSMAYPFLMLC-LWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAI 301
Cdd:PRK06459 213 MTILTQTIPIGYFGLTILAIgAFSILFGALYAYVSENVKGLLAFSTIENNGAILVAL 269
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
59-304 2.98e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 43.41  E-value: 2.98e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  59 DPLSSPLLVLTMWLLPLTVVASQYHLTKEPweRKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGN 138
Cdd:MTH00032  79 DTLSVTMLLVISSISTLVHIYSTSYMSDDP--HVPRFLCYLSLFTFLMMVLVTSDNYLQLFIGWEGVGVCSYLLVAFWTT 156
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 139 QTERLNAGLYFLFYTLTGSLPLLVALSYIQSSMGTLNLF----------MMTYWLQELPNSWSNYLLWTACIMAFMI--- 205
Cdd:MTH00032 157 RIQANKAAIKAIVVNRVGDVGVILGMVLIYKTIGSLDFLtfnggsvgsgIMDRGYYGGGAYESPLAPFAIIGILLLIgci 236
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 206 -KMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITmilnPLTKSMAYPFLMLCLWGMI---MTSLICLRQTD 281
Cdd:MTH00032 237 gKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSF----PLFEKAPLTLLIITIFGALtafFAATVGLVQND 312
                        250       260
                 ....*....|....*....|...
gi 311088135 282 LKSLIAYSSVSHMALVIVAILIQ 304
Cdd:MTH00032 313 LKKVIAYSTCSQLGYMVLIIGIE 335
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
82-295 3.21e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 43.28  E-value: 3.21e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  82 YHLTKEPWERKKHFLstLISLQLLLVMTFATTELIMFyILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLL 161
Cdd:PRK12649 103 YMSHKEDLPRYYQYL--LLFMGSMIGMVFSGNTIQLF-IFWELTSITSFMLIGYWRHRPESVYGATKSLLITAGGGLFMF 179
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 162 VALSYIQSSMGTLNLFMMTYWLQELPNSWSNYLLWTACIMAFM---IKMPLYGLHMWLPKAhVEAPIAGSMIL-AAILLK 237
Cdd:PRK12649 180 AGFLLLHVITGTYDIATILQDSELIENIKGHPLFLITLILIFIgaaAKSAQGPFYIWLPNA-MEAPTPVSAFLhSATMVK 258
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 311088135 238 LGGYGMMRItmilNPLTKSMAYPFLMLCLWGMI---MTSLICLRQTDLKSLIAYSSVSHMA 295
Cdd:PRK12649 259 AGVYLVARI----HPIFSGTEAWFILVSGTGMItmvLAGFLAFRQTDIKAILAYSTISQLA 315
PRK06591 PRK06591
putative monovalent cation/H+ antiporter subunit D; Reviewed
91-297 4.43e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235837 [Multi-domain]  Cd Length: 432  Bit Score: 42.46  E-value: 4.43e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135  91 RKKHFLSTLISLQLLLVMTFATTELIMFYILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLpLLVALSYIQSS 170
Cdd:PRK06591 113 RKSLFYGILLFAHTGYLGMIATNDFFNLYVFIEISALSSYVLIASGNNPKSLIGAFDYLIMGSIGATL-ILIAIGFLLSI 191
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 171 MGTLNLFMMTYWLQELPNSwsnyLLWTACIMAFMI----KMPLYGLHMWLPKAHVEAPIAGSMILAAILLKLGGYGMMRI 246
Cdd:PRK06591 192 TGSLNMTDIAAYLQEHTNS----RIITIAIGFFLIgailKTAFFPMHFWMMRAYNNTASVILVYLAGISTIIGIYIIYKF 267
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 311088135 247 TMIL---NPLTKSMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALV 297
Cdd:PRK06591 268 TYIIigyETIKTAITNFIRPIALATLIIAPYFAYQAKNFKNIIIYSCFTQIGYV 321
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
156-327 9.86e-03

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 38.35  E-value: 9.86e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 156 GSLPLLVALSYIQSSMGTLNLFMMTYWLQELP-NSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAhVEAPIAGSMILAAI 234
Cdd:PRK07390 183 GDLLLLMGVVALSPLAGTLNFSDLAAWAATANlDPLTATLLGLALIAGPTGKCAQFPLHLWLDEA-MEGPNPASILRNSV 261
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088135 235 LLKLGGYGMMRITMI--LNPLTKSmaypfLMLCLWGM--IMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPwslM 310
Cdd:PRK07390 262 VVATGAWVLIKLQPVlaLSPVALT-----VLIVIGTVtaIGASLVAIAQIDIKRALSYSTSAYLGLVFIAVGLQQP---D 333
                        170
                 ....*....|....*..
gi 311088135 311 GATTLMIAHGLTSSVLF 327
Cdd:PRK07390 334 IALLLLLTHAIAKALLF 350
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH