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Conserved domains on  [gi|311088320|gb|ADP68374|]
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cytochrome b (mitochondrion) [Lepilemur sahamalazensis]

Protein Classification

cytochrome b( domain architecture ID 11475898)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
1-379 0e+00

cytochrome b; Provisional


:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 737.99  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320   1 MTNTRKNHPLLKIINNSLIDLPTPPNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVAHICRDVNYGWTIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320  81 YLHANGASMFFLCLFIHVGRGLYYGSFTLLETWNVGITLLFSVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDL 160
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 161 VEWIWGGFSVGKATLTRFFALHFILPFITSALVMIHLLFLHETGSNNPLGVPSNSDKIPFHPYYTTKDFLGLLLLILLLM 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 241 TMALFYPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVMALILSILILVMFPFLQPNKQQTMMFRPL 320
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 311088320 321 SQFLFWILVADLLTLTWIGGQPVEDPFINIGQMASMLYFSLMIFIMPTTCFIENKMLKW 379
Cdd:MTH00100 321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 737.99  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320   1 MTNTRKNHPLLKIINNSLIDLPTPPNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVAHICRDVNYGWTIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320  81 YLHANGASMFFLCLFIHVGRGLYYGSFTLLETWNVGITLLFSVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDL 160
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 161 VEWIWGGFSVGKATLTRFFALHFILPFITSALVMIHLLFLHETGSNNPLGVPSNSDKIPFHPYYTTKDFLGLLLLILLLM 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 241 TMALFYPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVMALILSILILVMFPFLQPNKQQTMMFRPL 320
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 311088320 321 SQFLFWILVADLLTLTWIGGQPVEDPFINIGQMASMLYFSLMIFIMPTTCFIENKMLKW 379
Cdd:MTH00100 321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
11-373 8.21e-128

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 372.59  E-value: 8.21e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320  11 LKIINNSLIDLPTPPNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVAHICRDVNYGWTIRYLHANGASMF 90
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320  91 FLCLFIHVGRGLYYGSFT----LLetWNVGITLLFSVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDLVEWIWG 166
Cdd:COG1290  100 FAAVYLHMFRGFFYGAYKkpreLN--WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 167 GFSVGKATLTRFFALH-FILPFITSALVMIHLLFLHETGSNNPLGV----PSNSDKIPFHPYYTTKDFLGLLLLILLLMT 241
Cdd:COG1290  178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFAL 257
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 242 MALFYPDllGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVMALILSILILVMFPFLQPNKQQTMMFRP 319
Cdd:COG1290  258 LAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 311088320 320 LSQFLFWILVADLLTLTWIGGQPveDPFINIGQMASMLYFSLMIFIMPTTCFIE 373
Cdd:COG1290  336 VRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
9-206 6.49e-95

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 281.95  E-value: 6.49e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320   9 PLLKIINNSLIDLPTPPNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVAHICRDVNYGWTIRYLHANGAS 88
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320  89 MFFLCLFIHVGRGLYYGSF--TLLETWNVGITLLFSVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDLVEWIWG 166
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 311088320 167 GFSVGKATLTRFFALHFILPFITSALVMIHLLFLHETGSN 206
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 1.93e-85

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 257.31  E-value: 1.93e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320   18 LIDLPTPPNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVAHICRDVNYGWTIRYLHANGASMFFLCLFIH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320   98 VGRGLYYGSF--TLLETWNVGITLLFSVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDLVEWIWGGFSVGKATL 175
Cdd:pfam00033  81 IFRGLYYGGFsyPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160
                         170       180
                  ....*....|....*....|....*....
gi 311088320  176 TRFFALHFILPFITSALVMIHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
242-339 3.18e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 58.27  E-value: 3.18e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320  242 MALFYPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVMALILSILILVMFPFLQP-NKQQTMMFRPL 320
Cdd:TIGR01156  54 LAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFRRPV 128
                          90
                  ....*....|....*....
gi 311088320  321 SQFLFwiLVADLLTLtWIG 339
Cdd:TIGR01156 129 ATTVF--LFGTVVAL-WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 737.99  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320   1 MTNTRKNHPLLKIINNSLIDLPTPPNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVAHICRDVNYGWTIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320  81 YLHANGASMFFLCLFIHVGRGLYYGSFTLLETWNVGITLLFSVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDL 160
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 161 VEWIWGGFSVGKATLTRFFALHFILPFITSALVMIHLLFLHETGSNNPLGVPSNSDKIPFHPYYTTKDFLGLLLLILLLM 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 241 TMALFYPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVMALILSILILVMFPFLQPNKQQTMMFRPL 320
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 311088320 321 SQFLFWILVADLLTLTWIGGQPVEDPFINIGQMASMLYFSLMIFIMPTTCFIENKMLKW 379
Cdd:MTH00100 321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
CYTB MTH00119
cytochrome b; Provisional
1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 673.54  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320   1 MTNTRKNHPLLKIINNSLIDLPTPPNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVAHICRDVNYGWTIR 80
Cdd:MTH00119   2 APNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIR 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320  81 YLHANGASMFFLCLFIHVGRGLYYGSFTLLETWNVGITLLFSVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDL 160
Cdd:MTH00119  82 NLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTL 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 161 VEWIWGGFSVGKATLTRFFALHFILPFITSALVMIHLLFLHETGSNNPLGVPSNSDKIPFHPYYTTKDFLGLLLLILLLM 240
Cdd:MTH00119 162 VEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLL 241
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 241 TMALFYPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVMALILSILILVMFPFLQPNKQQTMMFRPL 320
Cdd:MTH00119 242 TLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPL 321
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 311088320 321 SQFLFWILVADLLTLTWIGGQPVEDPFINIGQMASMLYFSLMIFIMPTTCFIENKMLKW 379
Cdd:MTH00119 322 SQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00131
cytochrome b; Provisional
1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 654.03  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320   1 MTNTRKNHPLLKIINNSLIDLPTPPNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVAHICRDVNYGWTIR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320  81 YLHANGASMFFLCLFIHVGRGLYYGSFTLLETWNVGITLLFSVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDL 160
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 161 VEWIWGGFSVGKATLTRFFALHFILPFITSALVMIHLLFLHETGSNNPLGVPSNSDKIPFHPYYTTKDFLGLLLLILLLM 240
Cdd:MTH00131 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 241 TMALFYPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVMALILSILILVMFPFLQPNKQQTMMFRPL 320
Cdd:MTH00131 241 SLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPL 320
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 311088320 321 SQFLFWILVADLLTLTWIGGQPVEDPFINIGQMASMLYFSLMIFIMPTTCFIENKMLKW 379
Cdd:MTH00131 321 TQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEW 379
CYTB MTH00074
cytochrome b; Provisional
1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 648.28  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320   1 MTNTRKNHPLLKIINNSLIDLPTPPNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVAHICRDVNYGWTIR 80
Cdd:MTH00074   2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320  81 YLHANGASMFFLCLFIHVGRGLYYGSFTLLETWNVGITLLFSVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDL 160
Cdd:MTH00074  82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTL 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 161 VEWIWGGFSVGKATLTRFFALHFILPFITSALVMIHLLFLHETGSNNPLGVPSNSDKIPFHPYYTTKDFLGLLLLILLLM 240
Cdd:MTH00074 162 VQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALA 241
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 241 TMALFYPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVMALILSILILVMFPFLQPNKQQTMMFRPL 320
Cdd:MTH00074 242 LLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPL 321
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 311088320 321 SQFLFWILVADLLTLTWIGGQPVEDPFINIGQMASMLYFSLMIFIMPTTCFIENKMLKW 379
Cdd:MTH00074 322 TQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00191
cytochrome b; Provisional
5-367 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 610.38  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320   5 RKNHPLLKIINNSLIDLPTPPNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVAHICRDVNYGWTIRYLHA 84
Cdd:MTH00191   2 RKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHA 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320  85 NGASMFFLCLFIHVGRGLYYGSFTLLETWNVGITLLFSVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDLVEWI 164
Cdd:MTH00191  82 NGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWL 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 165 WGGFSVGKATLTRFFALHFILPFITSALVMIHLLFLHETGSNNPLGVPSNSDKIPFHPYYTTKDFLGLLLLILLLMTMAL 244
Cdd:MTH00191 162 WGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVL 241
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 245 FYPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVMALILSILILVMFPFLQPNKQQTMMFRPLSQFL 324
Cdd:MTH00191 242 FSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVV 321
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|...
gi 311088320 325 FWILVADLLTLTWIGGQPVEDPFINIGQMASMLYFSLMIFIMP 367
Cdd:MTH00191 322 FWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFP 364
CYTB MTH00156
cytochrome b; Provisional
11-366 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 609.86  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320  11 LKIINNSLIDLPTPPNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVAHICRDVNYGWTIRYLHANGASMF 90
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320  91 FLCLFIHVGRGLYYGSFTLLETWNVGITLLFSVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDLVEWIWGGFSV 170
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 171 GKATLTRFFALHFILPFITSALVMIHLLFLHETGSNNPLGVPSNSDKIPFHPYYTTKDFLGLLLLILLLMTMALFYPDLL 250
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 251 GDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVMALILSILILVMFPFLQPNKQQTMMFRPLSQFLFWILVA 330
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320
                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 311088320 331 DLLTLTWIGGQPVEDPFINIGQMASMLYFSLMIFIM 366
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
1-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 588.03  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320   1 MTNTRKNHPLLKIINNSLIDLPTPPNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVAHICRDVNYGWTIR 80
Cdd:MTH00145   2 LSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLR 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320  81 YLHANGASMFFLCLFIHVGRGLYYGSFTLLETWNVGITLLFSVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDL 160
Cdd:MTH00145  82 SLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKML 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 161 VEWIWGGFSVGKATLTRFFALHFILPFITSALVMIHLLFLHETGSNNPLGVPSNSDKIPFHPYYTTKDFLGLLLLILLLM 240
Cdd:MTH00145 162 VEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLV 241
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 241 TMALFYPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVMALILSILILVMFPFLQPNKQQTMMFRPL 320
Cdd:MTH00145 242 FLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPL 321
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 311088320 321 SQFLFWILVADLLTLTWIGGQPVEDPFINIGQMASMLYFSLMIfIMPTTCFIENKML 377
Cdd:MTH00145 322 NQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFL-ILPLVQKLWDNIL 377
CYTB MTH00034
cytochrome b; Validated
5-377 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 587.06  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320   5 RKNHPLLKIINNSLIDLPTPPNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVAHICRDVNYGWTIRYLHA 84
Cdd:MTH00034   5 RKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHA 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320  85 NGASMFFLCLFIHVGRGLYYGSFTLLETWNVGITLLFSVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDLVEWI 164
Cdd:MTH00034  85 NGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWI 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 165 WGGFSVGKATLTRFFALHFILPFITSALVMIHLLFLHETGSNNPLGVPSNSDKIPFHPYYTTKDFLGLLLLILLLMTMAL 244
Cdd:MTH00034 165 WGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLAL 244
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 245 FYPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVMALILSILILVMFPFLQPNKQQTMMFRPLSQFL 324
Cdd:MTH00034 245 LFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIA 324
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|...
gi 311088320 325 FWILVADLLTLTWIGGQPVEDPFINIGQMASMLYFSLMIFIMPTTCFIENKML 377
Cdd:MTH00034 325 FWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLI 377
CYTB MTH00016
cytochrome b; Validated
5-378 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 561.99  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320   5 RKNHPLLKIINNSLIDLPTPPNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVAHICRDVNYGWTIRYLHA 84
Cdd:MTH00016   6 RKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHA 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320  85 NGASMFFLCLFIHVGRGLYYGSFTLLETWNVGITLLFSVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDLVEWI 164
Cdd:MTH00016  86 NGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWL 165
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 165 WGGFSVGKATLTRFFALHFILPFITSALVMIHLLFLHETGSNNPLGVPSNSDKIPFHPYYTTKDFLGLLLLILLLMTMAL 244
Cdd:MTH00016 166 WGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVL 245
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 245 FYPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVMALILSILILVMFPFLQPNKQQTMMFRPLSQFL 324
Cdd:MTH00016 246 LWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQIL 325
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 311088320 325 FWILVADLLTLTWIGGQPVEDPFINIGQMASMLYFSlMIFIMPTTCFIENKMLK 378
Cdd:MTH00016 326 FWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFF-YFMINPLLMKLWDKLLK 378
CYTB MTH00053
cytochrome b; Provisional
1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 519.65  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320   1 MTNT-RKNHPLLKIINNSLIDLPTPPNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVAHICRDVNYGWTI 79
Cdd:MTH00053   1 MTKTiRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320  80 RYLHANGASMFFLCLFIHVGRGLYYGSFTLLETWNVGITLLFSVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTD 159
Cdd:MTH00053  81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 160 LVEWIWGGFSVGKATLTRFFALHFILPFITSALVMIHLLFLHETGSNNPLGVPSNSDKIPFHPYYTTKDFLGLLLLILLL 239
Cdd:MTH00053 161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 240 MTMALFYPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVMALILSILILVMFPFLQPNKQQTMMFRP 319
Cdd:MTH00053 241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 311088320 320 LSQFLFWILVADLLTLTWIGGQPVEDPFINIGQMASMLYFSLMIFIMPTTCFIENKMLK 378
Cdd:MTH00053 321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00022
cytochrome b; Validated
5-378 0e+00

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 518.10  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320   5 RKNHPLLKIINNSLIDLPTPPNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVAHICRDVNYGWTIRYLHA 84
Cdd:MTH00022   4 RKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHA 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320  85 NGASMFFLCLFIHVGRGLYYGSFTLLETWNVGITLLFSVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDLVEWI 164
Cdd:MTH00022  84 NGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWV 163
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 165 WGGFSVGKATLTRFFALHFILPFITSALVMIHLLFLHETGSNNPLGVPSNSDKIPFHPYYTTKDFLGLLLLILLLMTMAL 244
Cdd:MTH00022 164 WGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVY 243
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 245 FYPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVMALILSILILVMFPFLQPNKQQTMMFRPLSQFL 324
Cdd:MTH00022 244 FAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMA 323
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 311088320 325 FWILVADLLTLTWIGGQPVEDPFINIGQMASMLYFSLMIFIMPTTCFIENKMLK 378
Cdd:MTH00022 324 FWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00224
cytochrome b; Provisional
5-378 6.82e-173

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 486.74  E-value: 6.82e-173
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320   5 RKNHPLLKIINNSLIDLPTPPNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVAHICRDVNYGWTIRYLHA 84
Cdd:MTH00224   6 RTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHA 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320  85 NGASMFFLCLFIHVGRGLYYGSFTLLETWNVGITLLFSVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDLVEWI 164
Cdd:MTH00224  86 NGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWI 165
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 165 WGGFSVGKATLTRFFALHFILPFITSALVMIHLLFLHETGSNNPLGVPSNSDKIPFHPYYTTKDFLGLLLLILLLMTMAL 244
Cdd:MTH00224 166 WGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVL 245
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 245 FYPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVMALILSILILVMFPFLQPNKQQTMMFRPLSQFL 324
Cdd:MTH00224 246 FEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLL 325
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 311088320 325 FWILVADLLTLTWIGGQPVEDPFINIGQMASMLYFSLMIfIMPTTCFIENKMLK 378
Cdd:MTH00224 326 FWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFI-ISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
16-374 2.59e-135

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 391.61  E-value: 2.59e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320  16 NSLIDLPTPPNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVAHICRDVNYGWTIRYLHANGASMFFLCLF 95
Cdd:MTH00033  13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320  96 IHVGRGLYYGSFTLLETWNVGITLLFSVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDLVEWIWGGFSVGKATL 175
Cdd:MTH00033  93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 176 TRFFALHFILPFITSALVMIHLLFLHETGSNNPLGVPSNSDKIPFHPYYTTKDFLGLLLLILLLMTMAL--FYPDLLGDP 253
Cdd:MTH00033 173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIepRIETLLQDP 252
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 254 DNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVMALILSILILVMFPFLQPNKQQTMMFRPLSQFLFWILVADLL 333
Cdd:MTH00033 253 ENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFI 332
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 311088320 334 TLTWIGGQPV-EDPFINIGQMASMLYFSLMIFIMPTTCFIEN 374
Cdd:MTH00033 333 ILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
11-373 8.21e-128

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 372.59  E-value: 8.21e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320  11 LKIINNSLIDLPTPPNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVAHICRDVNYGWTIRYLHANGASMF 90
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320  91 FLCLFIHVGRGLYYGSFT----LLetWNVGITLLFSVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDLVEWIWG 166
Cdd:COG1290  100 FAAVYLHMFRGFFYGAYKkpreLN--WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 167 GFSVGKATLTRFFALH-FILPFITSALVMIHLLFLHETGSNNPLGV----PSNSDKIPFHPYYTTKDFLGLLLLILLLMT 241
Cdd:COG1290  178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFAL 257
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 242 MALFYPDllGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVMALILSILILVMFPFLQPNKQQTMMFRP 319
Cdd:COG1290  258 LAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 311088320 320 LSQFLFWILVADLLTLTWIGGQPveDPFINIGQMASMLYFSLMIFIMPTTCFIE 373
Cdd:COG1290  336 VRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
12-366 2.66e-124

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 362.33  E-value: 2.66e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320  12 KIINNSLIDLPTPPNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVAHICRDVNYGWTIRYLHANGASMFF 91
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320  92 LCLFIHVGRGLYYGSFTLLETWNVGITLLFSVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDLVEWIWGGFSVG 171
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 172 KATLTRFFALHFILPFITSALVMIHLLFLHETGSNNPLGVPSNSDKIPFHPYYTTKDFLGLLLLILLLMtMALFYPDLLG 251
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLVFII-FSLFYPFNLG 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 252 DPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVMALILSILILVMFPFLqpnKQQTMMFRPLSQFLFWILVAD 331
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFV---NNYTSCLNKLNKFLVFSFIVV 316
                        330       340       350
                 ....*....|....*....|....*....|....*
gi 311088320 332 LLTLTWIGGQPVEDPFINIGQMASMLYFSLMIFIM 366
Cdd:MTH00086 317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
CYTB MTH00046
cytochrome b; Validated
10-363 7.09e-97

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 292.66  E-value: 7.09e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320  10 LLKIINNSLIDLPTPPNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVAHICRDVNYGWTIRYLHANGASM 89
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320  90 FFLCLFIHVGRGLYYGSFTLLETWNVGITLLFSVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDLVEWIWGGFS 169
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 170 VGKATLTRFFALHFILPFITSALVMIHLLFLHETGSNNPLGVPSN-SDKIPFHPYYTTKDFLGLLLLILLLMTMALFYPD 248
Cdd:MTH00046 161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 249 LLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGvMALILSILILVMFpflqPNKQQTMMFRPLSQFLFWIL 328
Cdd:MTH00046 241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWV----PTFNGSSVYSVWRQVNFWLI 315
                        330       340       350
                 ....*....|....*....|....*....|....*
gi 311088320 329 VADLLTLTWIGGQPVEDPFINIGQMASMLYFSLMI 363
Cdd:MTH00046 316 VSLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLF 350
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
9-206 6.49e-95

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 281.95  E-value: 6.49e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320   9 PLLKIINNSLIDLPTPPNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVAHICRDVNYGWTIRYLHANGAS 88
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320  89 MFFLCLFIHVGRGLYYGSF--TLLETWNVGITLLFSVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDLVEWIWG 166
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 311088320 167 GFSVGKATLTRFFALHFILPFITSALVMIHLLFLHETGSN 206
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 1.93e-85

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 257.31  E-value: 1.93e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320   18 LIDLPTPPNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVAHICRDVNYGWTIRYLHANGASMFFLCLFIH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320   98 VGRGLYYGSF--TLLETWNVGITLLFSVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDLVEWIWGGFSVGKATL 175
Cdd:pfam00033  81 IFRGLYYGGFsyPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160
                         170       180
                  ....*....|....*....|....*....
gi 311088320  176 TRFFALHFILPFITSALVMIHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
207-354 2.04e-52

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 170.90  E-value: 2.04e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 207 NPLGVPSNSDKIPFHPYYTTKDFLGLLLLILLLMTMALFYPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPN 286
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 311088320 287 KLGGVMALILSILILVMFPFLQpNKQQTMMFRPLSQFLFWILVADLLTLTWIGGQPVEDPFINIGQMA 354
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLE-NSNKRSQFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
258-358 1.38e-43

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 146.47  E-value: 1.38e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320  258 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVMALILSILILVMFPFLQPNKQQTMMFRPLSQFLFWILVADLLTLTW 337
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80
                          90       100
                  ....*....|....*....|.
gi 311088320  338 IGGQPVEDPFINIGQMASMLY 358
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
88-253 1.19e-41

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 143.92  E-value: 1.19e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320   88 SMFFLCLFIHVGRGLYYGSFTLLE--TWNVGITLLFSVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDLVEWIW 165
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320  166 GGFSVGKATLTRFFALHF-ILPFITSALVMIHLLFLHETGSNNPLGVPSNSDKIPFHPYYTTKDFLGLLLLILLLMTMAL 244
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160

                  ....*....
gi 311088320  245 FYPDLLGDP 253
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
33-209 1.28e-40

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 142.93  E-value: 1.28e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320  33 FGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVAHICRDVNYGWTIRYLHANGASMFFLCLFIHVGRGLYYGSFTLLE- 111
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 112 -TWNVGITLLFSVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDLVEWIWGGFSVGKATLTRFFALH-FILPFIT 189
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203
                        170       180
                 ....*....|....*....|
gi 311088320 190 SALVMIHLLFLHETGSNNPL 209
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
24-209 4.56e-38

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 136.00  E-value: 4.56e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320  24 PPNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVAHICRDVNYGWTIRYLHANGASMFFLCLFIHVGRGLY 103
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 104 YGSFTLLE--TWNVGITLLFSVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDLVEWIWGGFSVGKATLTRFFAL 181
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186
                        170       180
                 ....*....|....*....|....*....
gi 311088320 182 H-FILPFITSALVMIHLLFLHETGSNNPL 209
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
242-330 6.24e-12

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 63.10  E-value: 6.24e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 242 MALFYPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVMALILSILILVMFPFLQP-NKQQTMMFRP- 319
Cdd:CHL00058  54 LAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENvNKFQNPFRRPv 128
                         90
                 ....*....|..
gi 311088320 320 -LSQFLFWILVA 330
Cdd:CHL00058 129 aTTVFLIGTAVA 140
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
242-339 6.52e-12

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 63.27  E-value: 6.52e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320 242 MALFYPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVMALILSILILVMFPFLQP-NKQQTMMFRPL 320
Cdd:COG5679   55 LAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENvNKFQNPFRRPV 129
                         90
                 ....*....|....*....
gi 311088320 321 SQFLFwiLVADLLTLtWIG 339
Cdd:COG5679  130 ATAVF--LFGTLVTL-WLG 145
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
242-339 3.18e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 58.27  E-value: 3.18e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088320  242 MALFYPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVMALILSILILVMFPFLQP-NKQQTMMFRPL 320
Cdd:TIGR01156  54 LAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFRRPV 128
                          90
                  ....*....|....*....
gi 311088320  321 SQFLFwiLVADLLTLtWIG 339
Cdd:TIGR01156 129 ATTVF--LFGTVVAL-WLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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