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Conserved domains on  [gi|311088350|gb|ADP68401|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Lepilemur edwardsi]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009566)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 1-317 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177166  Cd Length: 318  Bit Score: 583.89  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350   1 MFVANLLLLIIPIIVAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALS 80
Cdd:MTH00104   1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  81 IALTMWAPLPMPFPLINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMSGSF 160
Cdd:MTH00104  81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350 161 TLSTLITTQEYLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTT 240
Cdd:MTH00104 161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 311088350 241 LFLGTFYKSNMPETYTTNFTAKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPILMSYIPPQ 317
Cdd:MTH00104 241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQ 317
 
Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 1-317 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 583.89  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350   1 MFVANLLLLIIPIIVAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALS 80
Cdd:MTH00104   1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  81 IALTMWAPLPMPFPLINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMSGSF 160
Cdd:MTH00104  81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350 161 TLSTLITTQEYLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTT 240
Cdd:MTH00104 161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 311088350 241 LFLGTFYKSNMPETYTTNFTAKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPILMSYIPPQ 317
Cdd:MTH00104 241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQ 317
NADHdh pfam00146
NADH dehydrogenase;
15-305 8.89e-121

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 349.08  E-value: 8.89e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350   15 VAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWAPLPM--P 92
Cdd:pfam00146  11 LAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAVIPFgpG 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350   93 FPLINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMSGSFTLSTLITTQEYL 172
Cdd:pfam00146  91 LVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSEIVEAQAGG 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  173 WLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGtFYKSNMP 252
Cdd:pfam00146 171 WFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG-GWLGPFP 249

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 311088350  253 ETYTTNFTAKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYI 305
Cdd:pfam00146 250 LPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLLTA 302
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 15-299 1.00e-110

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 324.39  E-value: 1.00e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  15 VAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWAPLPM--P 92
Cdd:COG1005   24 LLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVIPFgpG 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  93 FPLINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMSGSFTLSTLITTQE-Y 171
Cdd:COG1005  104 LVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLSEIVEAQAgG 183

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350 172 LWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGTFYKSNM 251
Cdd:COG1005  184 LWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFLGGWLGPFP 263

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 311088350 252 PETYTT-----NFTAKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLA 299
Cdd:COG1005  264 ILPLGGlpgilWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
 
Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 1-317 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 583.89  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350   1 MFVANLLLLIIPIIVAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALS 80
Cdd:MTH00104   1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  81 IALTMWAPLPMPFPLINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMSGSF 160
Cdd:MTH00104  81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350 161 TLSTLITTQEYLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTT 240
Cdd:MTH00104 161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 311088350 241 LFLGTFYKSNMPETYTTNFTAKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPILMSYIPPQ 317
Cdd:MTH00104 241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQ 317
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 15-317 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 532.55  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  15 VAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWAPLPMPFP 94
Cdd:MTH00111  20 IAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILALLLALTIWTPLPMPFP 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  95 LINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMSGSFTLSTLITTQEYLWL 174
Cdd:MTH00111 100 LADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSGGYTLQTLATTQEPLWL 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350 175 IIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGTFYKSNMPET 254
Cdd:MTH00111 180 IFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLTTILFLNPSTLNLPPEL 259

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 311088350 255 YTTNFTAKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPILMSYIPPQ 317
Cdd:MTH00111 260 FTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQ 322
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 16-317 2.24e-180

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 500.69  E-value: 2.24e-180
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  16 AMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWAPLPMPFPL 95
Cdd:MTH00071  21 AVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMALTLALIIWTPLPMPNNL 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  96 INLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMSGSFTLSTLITTQEYLWLI 175
Cdd:MTH00071 101 SNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTGGFSLMNFNTTQEFMWLI 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350 176 IPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGTFYKSNMPETY 255
Cdd:MTH00071 181 IPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLSTILFLGSTYNHLQPELS 260

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 311088350 256 TTNFTAKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPILMSYIPPQ 317
Cdd:MTH00071 261 TMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIPPM 322
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 16-317 1.08e-177

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 494.12  E-value: 1.08e-177
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  16 AMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWAPLPMPFPL 95
Cdd:MTH00134  22 AVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLALTLALTLWAPMPMPYPV 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  96 INLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMSGSFTLSTLITTQEYLWLI 175
Cdd:MTH00134 102 TDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGFTLQTFNTAQESIWLL 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350 176 IPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGTFYKSNMPETY 255
Cdd:MTH00134 182 LPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILFLGASHIPTLPELT 261

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 311088350 256 TTNFTAKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPILMSYIPPQ 317
Cdd:MTH00134 262 TINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLPPQ 323
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 15-316 4.35e-145

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 410.84  E-value: 4.35e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  15 VAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWAPLPMPFP 94
Cdd:MTH00218  17 LAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLALLLWMPLPLPFS 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  95 LINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMSGSFTLSTLITTQEYLWL 174
Cdd:MTH00218  97 LINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFSLEGFNLTQETIWL 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350 175 IIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGTFYKsnmpet 254
Cdd:MTH00218 177 LIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSVILFLGTSLT------ 250

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 311088350 255 yTTNFTAKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPILMSYIPP 316
Cdd:MTH00218 251 -TINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 16-316 1.80e-141

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 402.43  E-value: 1.80e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  16 AMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWAPLPMPFPL 95
Cdd:MTH00040  20 AVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLFLALLLWSLIPVPTPT 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  96 INLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMSGSFTLSTLITTQEYLWLI 175
Cdd:MTH00040 100 LNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGSFSLSSISNSQNGSWLL 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350 176 IPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLG-TFYKSNMPET 254
Cdd:MTH00040 180 FPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLSVILFLGgGSPFNEIFPI 259

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 311088350 255 YTTNFTAKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPILMSYIPP 316
Cdd:MTH00040 260 NIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILPP 321
NADHdh pfam00146
NADH dehydrogenase;
15-305 8.89e-121

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 349.08  E-value: 8.89e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350   15 VAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWAPLPM--P 92
Cdd:pfam00146  11 LAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAVIPFgpG 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350   93 FPLINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMSGSFTLSTLITTQEYL 172
Cdd:pfam00146  91 LVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSEIVEAQAGG 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  173 WLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGtFYKSNMP 252
Cdd:pfam00146 171 WFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG-GWLGPFP 249

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 311088350  253 ETYTTNFTAKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYI 305
Cdd:pfam00146 250 LPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLLTA 302
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 15-313 4.00e-120

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 347.50  E-value: 4.00e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  15 VAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWAPLPMPFP 94
Cdd:MTH00195  17 LAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALALILWVPIPSPFG 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  95 LINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMSGSFTLSTLITTQEYLWL 174
Cdd:MTH00195  97 FSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDFTIMVISQGFSWV 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350 175 IIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGTfyksnmpeT 254
Cdd:MTH00195 177 ILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTILFLGG--------G 248

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 311088350 255 YTTNFTAKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPILMSY 313
Cdd:MTH00195 249 GTIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFALNS 307
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 15-311 3.07e-118

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 342.52  E-value: 3.07e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  15 VAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWAPLPMPFP 94
Cdd:MTH00193  17 VSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLIYPYLFN 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  95 LINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMSGSFTLSTLITTQEYLWL 174
Cdd:MTH00193  97 LISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSFNLLDFMNYQKYIWF 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350 175 IIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGTFYKSNMpet 254
Cdd:MTH00193 177 IFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVLMFLGGDLLSLL--- 253

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 311088350 255 yttnFTAKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPILM 311
Cdd:MTH00193 254 ----FYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 15-302 2.75e-117

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 340.31  E-value: 2.75e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  15 VAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWAPLPMPFP 94
Cdd:MTH00143  16 LAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLWQLYPSYFS 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  95 LINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMSGSFTLSTLITTQEYLWL 174
Cdd:MTH00143  96 SSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIEISESQFSVWL 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350 175 IIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGTFykSNMPET 254
Cdd:MTH00143 176 GFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLFFGGS--SVLFLL 253

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 311088350 255 YTTNFTAKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCM 302
Cdd:MTH00143 254 GGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILV 301
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 15-299 1.00e-110

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 324.39  E-value: 1.00e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  15 VAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWAPLPM--P 92
Cdd:COG1005   24 LLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVIPFgpG 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  93 FPLINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMSGSFTLSTLITTQE-Y 171
Cdd:COG1005  104 LVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLSEIVEAQAgG 183

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350 172 LWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGTFYKSNM 251
Cdd:COG1005  184 LWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFLGGWLGPFP 263

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 311088350 252 PETYTT-----NFTAKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLA 299
Cdd:COG1005  264 ILPLGGlpgilWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 15-307 9.99e-110

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 321.21  E-value: 9.99e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  15 VAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWAPLPMPFP 94
Cdd:MTH00225  16 LSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILSLILWSLYPSMFS 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  95 LINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMSGSFTLSTLITTQEYLWL 174
Cdd:MTH00225  96 IYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYNLFDFSYNQKYFWF 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350 175 IIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGTFYksnmpET 254
Cdd:MTH00225 176 MFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSILFFGGFF-----VT 250

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 311088350 255 YTTNFTAKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISL 307
Cdd:MTH00225 251 IDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLII 303
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 15-316 7.33e-107

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 314.36  E-value: 7.33e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  15 VAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWAPLPM--P 92
Cdd:MTH00054  17 ISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLAFIAWGVIPYgeG 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  93 FPLINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMSGSFTLSTLITTQEYL 172
Cdd:MTH00054  97 VVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSLNLTEIVLAQKNI 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350 173 WLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGTFYKSNMP 252
Cdd:MTH00054 177 WFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVILFLGGWLVISGP 256

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 311088350 253 ETYTTN---FTAKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPILMSYIPP 316
Cdd:MTH00054 257 TSYFSNfvwFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALPP 323
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
15-303 3.83e-104

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 307.50  E-value: 3.83e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  15 VAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWAPLPM--P 92
Cdd:PRK06076  25 LCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIPAFLAWAVIPFgpE 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  93 FPLINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMSGSFTLSTLITTQEYL 172
Cdd:PRK06076 105 LVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLNLSDIVEAQFLS 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350 173 WLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGTFYKSNMP 252
Cdd:PRK06076 185 WNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSALITTLFLGGWLPPFPL 264

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 311088350 253 ETYTTN---FTAKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMW 303
Cdd:PRK06076 265 GGGIPGaiwFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 15-316 1.08e-103

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 306.66  E-value: 1.08e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  15 VAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWAPLPMP-- 92
Cdd:MTH00216  21 IAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTLALIVWGVIPYErg 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  93 FPLINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMSGSFTLSTLITTQ-EY 171
Cdd:MTH00216 101 VLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCVGSLSITEIVLAQnNG 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350 172 LWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGTFykSNM 251
Cdd:MTH00216 181 IWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSCLTTILFLGGW--LSP 258

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 311088350 252 PETYTTN---FTAKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPILMSYIPP 316
Cdd:MTH00216 259 IKYFKGGagwFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFGFNGPPP 326
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 15-311 1.61e-94

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 282.44  E-value: 1.61e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  15 VAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWAPLPMPFP 94
Cdd:MTH00010  18 LAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILALLLWSLYPHKHP 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  95 LINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMSGSFTLSTLITTQeYLWL 174
Cdd:MTH00010  98 SFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFSFSKIIMSQ-YSWI 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350 175 IIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGTfyksnMPET 254
Cdd:MTH00010 177 LLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVFFTSF-----IPSI 251

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 311088350 255 YTTN--FTAKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPILM 311
Cdd:MTH00010 252 FISDlmLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLMISIPIMFLL 310
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 15-316 1.24e-85

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 261.10  E-value: 1.24e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  15 VAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWAPLPMP-- 92
Cdd:MTH00029  22 LSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAILAWAIVTMDqg 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  93 FPLINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMSGSFTLSTLITTQEYL 172
Cdd:MTH00029 102 VFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLNISEIVISQRSV 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350 173 WLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGTF------ 246
Cdd:MTH00029 182 WLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTIFFLGGWlspldg 261

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350 247 ----------YKSNMPETYTTNFTAKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPILMSYIPP 316
Cdd:MTH00029 262 iptppeafsiFEQIASSKSSFWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSLGLVILTAGILIGFNGVPP 341
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 16-307 3.01e-65

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 206.67  E-value: 3.01e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  16 AMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWAPLPMPFPL 95
Cdd:MTH00090  12 AIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEWFVLPYFFDF 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  96 INLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMSGSFTLStlitTQEYLWLI 175
Cdd:MTH00090  92 LSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFV----SSFSLSLF 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350 176 IpswpLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLflgtFYKSNMPETY 255
Cdd:MTH00090 168 V----IYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVL----FFKFSFLMLF 239

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 311088350 256 ttnftaktlLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISL 307
Cdd:MTH00090 240 ---------LIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSLIFLGFFVVL 282
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 18-298 2.24e-50

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 168.95  E-value: 2.24e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  18 AFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWAPLPMPFPLIN 97
Cdd:MTH00058  19 AFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYCFIYGSYYSGSY 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  98 LNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMSGSFTLSTLITTQEYLWLIIP 177
Cdd:MTH00058  99 SSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFYYSGWLSVLLFP 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350 178 swPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGTFYKSNMpetytt 257
Cdd:MTH00058 179 --LIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLFFGGGFVSIM------ 250

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 311088350 258 nftakTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTL 298
Cdd:MTH00058 251 -----LLFHLLFFMWARATLPRVRYDYFVNFFWEYCLVLLI 286
ndhA CHL00032
NADH dehydrogenase subunit 1
 23-298 2.04e-49

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 168.21  E-value: 2.04e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  23 IERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLA-LSIALTMwapLPMPFP----LIN 97
Cdd:CHL00032  50 LEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAvISILLSY---LVIPFGyhlvLAD 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  98 LNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMSGSftLSTL-ITTQEYLWLII 176
Cdd:CHL00032 127 LSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNS--LSTVdIVEAQSKYGFW 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350 177 pSWPL------TMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGTFYKS- 249
Cdd:CHL00032 205 -GWNLwrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNLSi 283

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 311088350 250 ---NMPETYTTNFTAK----------TLLLTSLFLWI----RASYPRFRYDQLMHLLWKNFLPLTL 298
Cdd:CHL00032 284 pyiFIPELFEINKTGGvfgttigifiTLAKTYLFLFIsittRWTLPRLRMDQLLNLGWKFLLPISL 349
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
19-305 1.47e-32

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 122.21  E-value: 1.47e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  19 FFTLIERKILGYMQLRKGPntvgphGLLQPFADAVKLYIKEPLRPlASSTLLYITAPTLALSIALT--MWAPLPMPFPLI 96
Cdd:COG0650   20 LLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVP-ETASWLFRAAPYVALAAMLLaaLLVPVLTTGPPL 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350  97 NLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMSGSFTLSTLITTQE---YLW 173
Cdd:COG0650   93 SFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLAGSTSLSDIVAYQAahgPLL 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088350 174 LIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGTFYKSNMPE 253
Cdd:COG0650  173 LSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVLLSLFVNLFLPWGIALTLLL 252

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 311088350 254 TYTTnFTAKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYI 305
Cdd:COG0650  253 ALLL-FLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLAVL 303
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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