NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|320526266|gb|ADW41677|]
View 

NADH dehydrogenase subunit 2 (mitochondrion) [Psittacara leucophthalmus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 5.38e-143

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 408.06  E-value: 5.38e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266   1 MAPLTKLISASSILLGTMITITSNHWMTAWIGLEINTLSIIPLISKPHHPRAIEAATKYFLVQAAASALLLFSGMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  81 TGQWDITQLSYPPSCLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNPTLLTLMSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 161 SIALGGWMGLNQTQTRKILAFSSISHIGWMTIIIIHNPKLTLLTFYIYILMTTSIFLTMSMTNTPSLPTLMTSWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTATAISLLSLLNLFFYLRLAYCSTITLPPNPSNKMKQWSTKNP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 320526266 321 TNTLIPTLTSLSTSLLPLTPMMLTTT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 5.38e-143

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 408.06  E-value: 5.38e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266   1 MAPLTKLISASSILLGTMITITSNHWMTAWIGLEINTLSIIPLISKPHHPRAIEAATKYFLVQAAASALLLFSGMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  81 TGQWDITQLSYPPSCLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNPTLLTLMSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 161 SIALGGWMGLNQTQTRKILAFSSISHIGWMTIIIIHNPKLTLLTFYIYILMTTSIFLTMSMTNTPSLPTLMTSWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTATAISLLSLLNLFFYLRLAYCSTITLPPNPSNKMKQWSTKNP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 320526266 321 TNTLIPTLTSLSTSLLPLTPMMLTTT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-276 6.32e-30

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 119.07  E-value: 6.32e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  14 LLGTMITITSNHWMTAWIGLEINTLSIIPLIS-KPHHPRAIEAATKYFLVQAAASALLLF--------SGMTN----AWH 80
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlagiAAA 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  81 TGQWDITQLSYPPSCLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKL----PPTTILLITSHSLNP---TL 153
Cdd:COG1007  192 LAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqLL 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 154 LTLMSIMSIALGGWMGLNQTQTRKILAFSSISHIGWMTIIIIHNPKLTL--LTFY--IYILMTTSIFLTMSMTNTPSLPT 229
Cdd:COG1007  272 LAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYllAYLFMNLGAFAVILLLSRKGGEA 351

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 320526266 230 LMTS-----WTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELT 276
Cdd:COG1007  352 EEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLY 403
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 5.07e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 105.09  E-value: 5.07e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266   23 SNHWMTAWIGLEINTLSIIPLI-SKPHHPRAIEAATKYFLVQAAASALLLFSGMTNAWHTGQWDITQLSYPPSC------ 95
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266   96 -----LLLTTAIAIKLGLAPFHFWFPEVLQGSSFT-TALLLSTVMKLPPttILLITSHSLNPT-------LLTLMSIMSI 162
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGG--YGLIRRSLLYLPsspfiqqILLILAIISM 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  163 ALGGWMGLNQTQTRKILAFSSISHIGWMTIII----IHNPKLTLLTFYIYILMTTSIFL-----TMSMTNTPSLPTLMTS 233
Cdd:pfam00361 159 LLGSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGL 238

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 320526266  234 WTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 239 AKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 13-275 1.23e-23

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 101.18  E-value: 1.23e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266   13 ILLGTMITITSNHWMTAWIGLEINTLSIIPLIS-KPHHPRAIEAATKYFLVQAAASALLLF--------------SGMTN 77
Cdd:TIGR01770 111 ALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFgisliygftgslnfEDLLL 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266   78 AWHTGQWDITQLSYppSCLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILL-------ITSHSLN 150
Cdd:TIGR01770 191 FLSNGMLNISLLLL--GIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAW 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  151 PTLLTLMSIMSIALGGWMGLNQTQTRKILAFSSISHIGW----MTIIIIHNPKLTLLTFYIYILMTTSIFLTMSMTNTPS 226
Cdd:TIGR01770 269 QIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiligLLAGTLEGIKAVLFYIFIYALMSLGAFGVLSLLRSYK 348

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 320526266  227 LP-----TLMTSWTKT-PMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEL 275
Cdd:TIGR01770 349 DEwieyiSDFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 5.38e-143

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 408.06  E-value: 5.38e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266   1 MAPLTKLISASSILLGTMITITSNHWMTAWIGLEINTLSIIPLISKPHHPRAIEAATKYFLVQAAASALLLFSGMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  81 TGQWDITQLSYPPSCLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNPTLLTLMSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 161 SIALGGWMGLNQTQTRKILAFSSISHIGWMTIIIIHNPKLTLLTFYIYILMTTSIFLTMSMTNTPSLPTLMTSWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTATAISLLSLLNLFFYLRLAYCSTITLPPNPSNKMKQWSTKNP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 320526266 321 TNTLIPTLTSLSTSLLPLTPMMLTTT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-325 2.10e-117

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 343.06  E-value: 2.10e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266   1 MAPLTKLISASSILLGTMITITSNHWMTAWIGLEINTLSIIPLISKPHHPRAIEAATKYFLVQAAASALLLFSGMTNAWH 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  81 TGQWDITQLSYPPSCLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNPTLLTLMSIM 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 161 SIALGGWMGLNQTQTRKILAFSSISHIGWMTIIIIHNPKLTLLTFYIYILMTTSIFLTMSMTNTPSLPTLMTSWTKTPML 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTATAISLLSLLNLFFYLRLAYCSTITLPPNPSNKMKQWSTKNP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320


                 ....*
gi 320526266 321 TNTLI 325
Cdd:MTH00070 321 TNNLL 325
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-324 7.94e-116

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 339.09  E-value: 7.94e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266   1 MAPLTKLISASSILLGTMITITSNHWMTAWIGLEINTLSIIPLISKPHHPRAIEAATKYFLVQAAASALLLFSGMTNAWH 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  81 TGQWDITQLSYPPSCLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTtILLITSHSLNPTLLTLMSIM 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPF-ALILQIAPTNPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 161 SIALGGWMGLNQTQTRKILAFSSISHIGWMTIIIIHNPKLTLLTFYIYILMTTSIFLTMSMTNTPSLPTLMTSWTKTPML 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTATAISLLSLLNLFFYLRLAYCSTITLPPNPSNKMKQWSTKNP 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319


                 ....
gi 320526266 321 TNTL 324
Cdd:MTH00135 320 QLTL 323
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-325 1.28e-103

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 307.93  E-value: 1.28e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266   1 MAPLTKLISASSILLGTMITITSNHWMTAWIGLEINTLSIIPLISKPHHPRAIEAATKYFLVQAAASALLLFSGMTNAWH 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  81 TGQWDITQLSYPPSCLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNPTLLTLMSIM 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 161 SIALGGWMGLNQTQTRKILAFSSISHIGWMTIIIIHNPKLTLLTFYIYILMTTSIFLTMSMTNTPSLPTLMTSWTKTPML 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTATAISLLSLLNLFFYLRLAYCSTITLPPNPSNKMKQWSTKNP 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320


                 ....*
gi 320526266 321 TNTLI 325
Cdd:MTH00105 321 KPMTL 325
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 4.32e-90

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 273.77  E-value: 4.32e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266   1 MAPLTKLISASSILLGTMITITSNHWMTAWIGLEINTLSIIPLISKPHHPRAIEAATKYFLVQAAASALLLFSGMTNAWH 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  81 TGQWDITQLSYPPSCLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNPTLLTLMSIM 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 161 SIALGGWMGLNQTQTRKILAFSSISHIGWMTIIIIHNPKLTLLTFYIYILMTTSIFLTMSMTNTPSLPTLMTSWTKTPML 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTATAISLLSLLNLFFYLRLAYCSTITLPPNPSNKMKQWSTKNP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|....*.
gi 320526266 321 TNTLIPTLTSLSTSLLPLTPMMLTTT 346
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 11-271 1.98e-79

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 246.38  E-value: 1.98e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  11 SSILLGTMITITSNHWMTAWIGLEINTLSIIPLISKPHHPRAIEAATKYFLVQAAASALLLFSGMTNAWHTGQWDITQLS 90
Cdd:MTH00041  11 TSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPL 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  91 YPPSCLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNPTLLTLMSIMSIALGGWMGL 170
Cdd:MTH00041  91 NTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGL 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 171 NQTQTRKILAFSSISHIGWMTIIIIHNPKLTLLTFYIYILMTTSIFLTMSMTNTPSLPTLMTSWTKTPMLSTTLMLTLLS 250
Cdd:MTH00041 171 NQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILS 250

                        250       260
                 ....*....|....*....|.
gi 320526266 251 LAGLPPLTGFLPKWLIIQELI 271
Cdd:MTH00041 251 LGGLPPLTGFLNKFISLYCLI 271
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-271 9.08e-54

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 179.63  E-value: 9.08e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266   1 MAPLTKLISASSILLGTMITITSNHWMTAWIGLEINTLSIIPLISKPHHPRAIEAATKYFLVQAAASALLLFSGMTNAWh 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  81 tgqwdITQLSYPPSCLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPttiLLITSHSLNPTLLTLMSIM 160
Cdd:MTH00160  81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAP---LILLSYLINNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 161 SIALGGWMGLNQTQTRKILAFSSISHIGWMTIIIIHNPKLTLLTFYIYILMTTSIFLTMSMTNTPSLPTLMTSWTKTPML 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270
                 ....*....|....*....|....*....|.
gi 320526266 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELI 271
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLI 263
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 13-272 3.04e-48

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 165.06  E-value: 3.04e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  13 ILLGTMITITSNHWMTAWIGLEINTLSIIPLISKPHHPRAIEAATKYFLVQAAASALLLFSGMTNAWHTGQWDITqlsyp 92
Cdd:MTH00144  13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM----- 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  93 pscLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPT-TILLITSHSLNPTLLTLMSIMSIALGGWMGLN 171
Cdd:MTH00144  88 ---SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLfLLSNFLDLYWLAYLLCVISVLSALVGSIGGLN 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 172 QTQTRKILAFSSISHIGWMTIIIIHNPKLTLLTFYIYILMTTSIFLTMSMTNTPSLpTLMTSWTKTPMLSTTLMLTLLSL 251
Cdd:MTH00144 165 QTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSM-KDLGSLKPSYKTGLSIISLLLSL 243

                        250       260
                 ....*....|....*....|.
gi 320526266 252 AGLPPLTGFLPKWLIIQELIK 272
Cdd:MTH00144 244 GGLPPFLGFCSKLLVLISSME 264
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 11-271 1.14e-43

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 152.90  E-value: 1.14e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  11 SSILLGTMITITSNHWMTAWIGLEINTLSIIPLISKPHHPRAIEAATKYFLVQAAASALLLFSGMTNAWHTgqwditqLS 90
Cdd:MTH00197   5 FIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL-------YL 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  91 YPPSCLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHslNPTLLTLMSIMSIALGGWMGL 170
Cdd:MTH00197  78 SLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGGM 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 171 NQTQTRKILAFSSISHIGWMTIIIIHNPKLTLLTFYIYILMTTSIFLTMSMTNTPSLPTLMTSWTKTPMLSTTLMLTLLS 250
Cdd:MTH00197 156 NQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLS 235

                        250       260
                 ....*....|....*....|.
gi 320526266 251 LAGLPPLTGFLPKWLIIQELI 271
Cdd:MTH00197 236 LGGLPPLSGFFLKWLILTSLL 256
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 5-275 3.78e-43

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 151.86  E-value: 3.78e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266   5 TKLISASSILLGTMITITSNHWMTAWIGLEINTLSIIPLISKPHHPRAIEAATKYFLVQAAASALLLFSgmtnawHTGQW 84
Cdd:MTH00011   7 TMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLG------MTMMW 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  85 DITQLSYPPSCLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNPTLLTLMSIMSIAL 164
Cdd:MTH00011  81 SFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 165 GGWMGLNQTQTRKILAFSSISHIGWMTIIIIHNPKLTLLTFYIYILMTTSIFLTMSMTNTPSLPTLMTSWTKTPMLSTTL 244
Cdd:MTH00011 161 GGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSL 240

                        250       260       270
                 ....*....|....*....|....*....|.
gi 320526266 245 MLTLLSLAGLPPLTGFLPKWLIIQELIKQEL 275
Cdd:MTH00011 241 FIMLLSLGGLPPFTGFMPKLMAIETLTSNSM 271
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-276 6.32e-30

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 119.07  E-value: 6.32e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  14 LLGTMITITSNHWMTAWIGLEINTLSIIPLIS-KPHHPRAIEAATKYFLVQAAASALLLF--------SGMTN----AWH 80
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlagiAAA 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  81 TGQWDITQLSYPPSCLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKL----PPTTILLITSHSLNP---TL 153
Cdd:COG1007  192 LAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqLL 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 154 LTLMSIMSIALGGWMGLNQTQTRKILAFSSISHIGWMTIIIIHNPKLTL--LTFY--IYILMTTSIFLTMSMTNTPSLPT 229
Cdd:COG1007  272 LAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYllAYLFMNLGAFAVILLLSRKGGEA 351

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 320526266 230 LMTS-----WTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELT 276
Cdd:COG1007  352 EEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLY 403
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-274 1.28e-29

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 116.67  E-value: 1.28e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  13 ILLGTMITITSNHWMTAWIGLEINTLSIIPLI-SKPHHPRAIEAATKYFLVQAAASALLLFS-----GMTNAWH------ 80
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcGTTGGLHlsyinl 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  81 --TGQWDITQLSYPPSCLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLitSHSLNPTLLTLMS 158
Cdd:MTH00196  82 vlNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 159 IMSIALGGWMGLNQTQTRKILAFSSISHIGWMTIII----IHNPKLTLLTFYIYILMTTSIFLTMSMTNTPS--LPTLMT 232
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 320526266 233 SWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQE 274
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQ 281
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 5.07e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 105.09  E-value: 5.07e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266   23 SNHWMTAWIGLEINTLSIIPLI-SKPHHPRAIEAATKYFLVQAAASALLLFSGMTNAWHTGQWDITQLSYPPSC------ 95
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266   96 -----LLLTTAIAIKLGLAPFHFWFPEVLQGSSFT-TALLLSTVMKLPPttILLITSHSLNPT-------LLTLMSIMSI 162
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGG--YGLIRRSLLYLPsspfiqqILLILAIISM 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  163 ALGGWMGLNQTQTRKILAFSSISHIGWMTIII----IHNPKLTLLTFYIYILMTTSIFL-----TMSMTNTPSLPTLMTS 233
Cdd:pfam00361 159 LLGSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGL 238

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 320526266  234 WTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 239 AKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-279 9.15e-26

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 107.21  E-value: 9.15e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  14 LLGTMITITSNHWMTAWIGLEINTLSIIPLIS-KPHHPRAIEAATKYFLVQAAASALLL--------------FSGMTNA 78
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLygmsllygatgslsFAGIAKA 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  79 WHTGQWDITQLSYppSCLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKL----PPTTILLITSHSLNPT-- 152
Cdd:PRK05777 193 LADGSGNSLLLLF--GLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwq 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 153 -LLTLMSIMSIALGGWMGLNQTQTRKILAFSSISHIGWMTIIIIHNPKLTL--LTFY--IYILMTTSIFLTMSMTNTPSL 227
Cdd:PRK05777 271 qVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYllAYLFMTLGAFGVISLLRRKGG 350

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 320526266 228 P-TLMTSWT----KTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTA 279
Cdd:PRK05777 351 EaESISDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLA 407
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 13-267 5.40e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 102.02  E-value: 5.40e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  13 ILLGTMITITSNHWMTAWIGLEINTLSIIPLIS-KPHHPRAIEAATKYFLVQAAASALLLFSGMTNAWHTGQWDITQLSY 91
Cdd:MTH00199 106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINS 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  92 PPSC----LLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNPTLLTlmSIMSIALGGW 167
Cdd:MTH00199 186 ILTGdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAI 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 168 MGLNQTQTRKILAFSSISHIGW----MTIIIIHNPKLTLLTFYIYILMTTSIF-LTMSMTNTPSLPTLMTSWT-KTPMLS 241
Cdd:MTH00199 264 GALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFsIILSLKLTKGLIVEVSGLSrKNPVIA 343

                        250       260
                 ....*....|....*....|....*.
gi 320526266 242 TTLMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199 344 LTLALTFLSIAGIPPLAGFLSKWLIL 369
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 13-275 1.23e-23

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 101.18  E-value: 1.23e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266   13 ILLGTMITITSNHWMTAWIGLEINTLSIIPLIS-KPHHPRAIEAATKYFLVQAAASALLLF--------------SGMTN 77
Cdd:TIGR01770 111 ALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFgisliygftgslnfEDLLL 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266   78 AWHTGQWDITQLSYppSCLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILL-------ITSHSLN 150
Cdd:TIGR01770 191 FLSNGMLNISLLLL--GIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAW 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  151 PTLLTLMSIMSIALGGWMGLNQTQTRKILAFSSISHIGW----MTIIIIHNPKLTLLTFYIYILMTTSIFLTMSMTNTPS 226
Cdd:TIGR01770 269 QIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiligLLAGTLEGIKAVLFYIFIYALMSLGAFGVLSLLRSYK 348

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 320526266  227 LP-----TLMTSWTKT-PMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEL 275
Cdd:TIGR01770 349 DEwieyiSDFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 14-282 1.63e-18

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 85.97  E-value: 1.63e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  14 LLGTMITITSNHWMTAWIGLEINTLSIIPLISKPHHPRAIEAATKYFLVQAAASALLLFSGMTNAWHTGQWDITQLS--- 90
Cdd:COG0651  117 LAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAarl 196

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  91 --YPPS-----CLLLTTAIAIKLGLAPFHFWFPEVL-QGSSFTTALLLSTVMKLPP-------TTILLITSHSLNPTLLT 155
Cdd:COG0651  197 aeLDPGlllaaFALLLVGFGIKAALFPLHFWLPDAYpAAPSPVSALLSGLLTKVGVyailrvlTLLFGADPALFLGTLLL 276

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 156 LMSIMSIALGGWMGLNQTQTRKILAFSSISHIGWMTIII-IHNPKLTLLTFYIYI---LMTTSIFLT----MSMTNTPSL 227
Cdd:COG0651  277 VLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLgLGTPLGLAGALFHLLnhaLAKALLFLAagaiERATGTRDL 356

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 320526266 228 PTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTATAI 282
Cdd:COG0651  357 DKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVL 411
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 15-272 7.73e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 81.44  E-value: 7.73e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  15 LGTMITITSNHWMTAWIGLEINTLSIIPLISKPHHPRAI---------EAATKYFLVQAAASALLLF-----------SG 74
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFgcalyfgftgnEG 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  75 MTNAWHTGQWDITQLSYPPSCL---LLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLppTTILLITSHSLNP 151
Cdd:MTH00198 279 MLGTILSATLETTNIELRQGSLgylFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 152 TLLTLMSIMSIALGGWMGLNQTQTRKILAFSSISHIGWMTIIIIHNPKLTLLTFYIYILM-------------TTSIFLT 218
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVTylvsalasftvicTLEEFGT 436

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 320526266 219 MSMTNTPSLPTL-----------MTSWTK-TPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIK 272
Cdd:MTH00198 437 RTPTSRQRDGSFgnynlvrrlvdLTILSRgQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIK 502
ndhB CHL00049
NADH dehydrogenase subunit 2
 1-263 1.54e-15

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 77.35  E-value: 1.54e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266   1 MAPLTKLISASSILLGTMITITSNHWMTAWIGLEINTLSIIPLISKPHHP-RAIEAATKYFLVQAAASALLL--FSGM-- 75
Cdd:CHL00049 108 MAITEFLLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFSWLyg 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  76 TNAWHTGQWDI------TQLSYPPSCLL----LTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLP----PTTI 141
Cdd:CHL00049 188 LSGGEIELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAasalATRI 267

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 142 LLITSHSLNP---TLLTLMSIMSIALGGWMGLNQTQTRKILAFSSISHIGWMTI-IIIHNPKL---TLLTF-YIYILMTT 213
Cdd:CHL00049 268 FDIPFYFSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIgIIVGDSNDgyaSMITYmLFYIFMNL 347

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 320526266 214 SIF----LTMSMTNTPSLPTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPK 263
Cdd:CHL00049 348 GTFacivLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGFFGK 401
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 38-192 1.75e-13

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 70.88  E-value: 1.75e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  38 LSIIP---LISKPHHPRAIEAATKYFLVQAAASALLLFSGMTNAWHTGQW-----DITQLSYPPS-----CLLLTTAIAI 104
Cdd:COG1008  142 LMLIPmyfLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTaqlllFLAFFIAFAV 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 105 KLGLAPFHFWFPEVLQGSSFTTALLLSTVMK-----------LPpttILLITSHSLNPTLLTLmSIMSIALGGWMGLNQT 173
Cdd:COG1008  222 KVPMFPFHTWLPDAHVEAPTAGSVLLAGVLLkmggygllrfaLP---LFPEASAYFAPLLAAL-GVIGIIYGALVALAQT 297

                        170
                 ....*....|....*....
gi 320526266 174 QTRKILAFSSISHIGWMTI 192
Cdd:COG1008  298 DLKRLIAYSSVSHMGFVLL 316
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
15-263 1.67e-10

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 61.99  E-value: 1.67e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  15 LGTMITITSNHWMTAWIGLEinTLSIIP-LIS--KPHHPRAIEAATKYFLVQAAASALLLF---------SGMTNAWHTG 82
Cdd:PRK02504 121 LGGMFLSGATELVMIFISLE--TLSIASyLLTgyMKRDPRSNEAALKYLLIGAASSAIFLYgssllyglsGGSTQLSAIA 198

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  83 QWDITQLSYPP--SCLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTI---LLITSHSLNPT----L 153
Cdd:PRK02504 199 LALITSPSLGLalALVFVIAGIAFKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAGFALairLLVTAFPSFDEqwklL 278

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 154 LTLMSIMSIALGGWMGLNQTQTRKILAFSSISHIGWMTIIIIHNPK--LTLLTFY--IYILMT----TSIFLTMSMTNTP 225
Cdd:PRK02504 279 FTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMIGLVAGTEagYASMVFYllAYLFMNlgafACVILFSLRTGTD 358

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 320526266 226 SLPTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK02504 359 QISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 7.11e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 60.11  E-value: 7.11e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  33 LEINTLSIIPLIS-KPHHPRAIEAATKYFLVQAAASALLLFSgmtNAWHTGQWDITQLSY-------PPSCL------LL 98
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLG---IALLYGQYGTLNMAYlavkmseNPTVVakialaLF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  99 TTAIAIKLGLAPFHFWFPEVLQG--SSFTTALLLSTVMKLPPTTILLITSHSLNPTLLTLMSIMSI------ALGGWMGL 170
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALARVLFSIYGPAINLATVGWVIIIlgcltmFVGVAMAV 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 171 NQTQTRKILAFSSISHIGWM------TIIIIHNPKLTLL--------TFYI--YILMTTSIFLT----MSMTNTPSLPTL 230
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMllglgvGLAALGDPAMASYgeialaggIYHIvnHALYKALLFLTagavIYETGTRNLNEL 386

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 320526266 231 MTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376 387 GGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-271 1.12e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 59.51  E-value: 1.12e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  33 LEINTLSIIPLISKPHHPRAIEAATKYFLVQAAASALLLFS-GMTNAwHTGQWDITQLS--YPPSCLLLT------TAIA 103
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAgaLAENPTVVTafgfvlLALA 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 104 IKLGLAPFHFWFPEVLQG-SSFTTALLLSTVMKLPPTTILLITSH----------SLNPTLLTLMsIMSIALGGWMGLNQ 172
Cdd:PRK08375 214 LKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTvfggdfrfalGLGWLLAVLA-LLSMLVGSLAALGQ 292

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 173 TQTRKILAFSSISHIGWMTI-IIIHNPK-LTLLTFYI--YILMTTSIFLT----MSMTNTPSLPTLMTSWTKTPMLSTTL 244
Cdd:PRK08375 293 DDVKRVLAYSTVSQMGYILLgLALLTPLaLAAGLLHLlhHALMKGALFLAagaiEVTYGTRRLSELSGLGRRMPLTAAAF 372

                        250       260
                 ....*....|....*....|....*..
gi 320526266 245 MLTLLSLAGLPPLTGFLPKWLIIQELI 271
Cdd:PRK08375 373 AVASLSLIGVPPTSGFVSKWYLVVGAV 399
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 14-282 2.56e-09

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 58.47  E-value: 2.56e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  14 LLGTMITITSNHWMTAWIGLEINTLS---IIPLISKphhpRAIEAATKYFLVQAAASALLLFSGMTNAWHTGQWDITQ-- 88
Cdd:PRK08668 108 LAGVLGVFLANDLLTLYIFWEIMTFSsfmMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADis 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  89 --LSYPPS-------CLLLTTAIAIKLGLAPFHFWFPEV--LQGSSFTTAL----------LLSTVMKLPPTTILLIT-- 145
Cdd:PRK08668 184 qgLINDTStgfalivFLFLLAFGVAKAGIFPLHVWAPDAysEAPQSFSAVLsgqlsklgayGFLLVLYVLPGTKLFSEfg 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 146 ---SHSLNPTLLTLMSIMSIALGGWMGLNQTQTRKILAFSSISHIGW--MTIIIIHNPKLTLLTFYI--YILMTTSIFLT 218
Cdd:PRK08668 264 tyrGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYilVGLGLGTSLGFAGGLFHVfnHALFKGLFFLI 343

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 320526266 219 MSM----TNTPSLPTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTATAI 282
Cdd:PRK08668 344 FAAviyrTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA 411
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-282 8.67e-09

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 56.49  E-value: 8.67e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266   50 PRAIEAATKYFLVQAAASALLLFS----GMTNAWHTGQWDITQLSYPPSC-----LLLTTAIAIKLGLAPFHFWFPEV-L 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAilglYFLGGGTFDLLELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  120 QGSSFTTALLLSTVMKLPPTTILLI-------TSHSLNPTLLTLmSIMSIALGGWMGLNQTQTRKILAFSSISHIGWMTI 192
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFnlplfpdASLYFAPVLAAL-GVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  193 IIIHNPKLTLLTFYIYI----LMTTSIFLTMSM----TNTPSLPTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKW 264
Cdd:TIGR01972 311 GIFSFNELGISGAVFQMishgLITAALFLLVGVlyerAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEF 390

                         250
                  ....*....|....*...
gi 320526266  265 LIIQELIKQELTTTATAI 282
Cdd:TIGR01972 391 LILLGSFKVNPVVAFLAA 408
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-194 9.31e-08

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 53.61  E-value: 9.31e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  13 ILLGTMITITSNHWMTAWIGLEINTLSIIPLISKPHHPRAIEAATKYFLVQAAA------SALLLFSGMTNAWHTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  87 TQLS-----YPPSCLLLT-----TAIAIKLGLAPFHFWFPEV-LQGSSFTTALLLSTVMKLPPTTILLITS-------HS 148
Cdd:PRK08676 191 TELAahaslLSPSVLGASflfifIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 320526266 149 LNPTLLTLMSIMSIALGGWMGLNQTQTRKILAFSSISHIGWMTIII 194
Cdd:PRK08676 271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGI 316
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 38-194 2.37e-07

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 52.13  E-value: 2.37e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  38 LSIIP---LISKPHHPRAIEAATKYFLVQAAASALLLFS----GMTNAWHTGQWDITQL---SYPPS-------CLLLtt 100
Cdd:PRK05846 142 AMLIPmyfLIGVWGGKNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLlnlPLPPGvqywlflAFFI-- 219

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 101 AIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVM-----------KLPpttILLITSHSLNPTLLTLmSIMSIALGGWMG 169
Cdd:PRK05846 220 AFAVKMPMFPLHTWLPDAHVQAPTAGSVLLAGILlkmgaygllrfSLP---LFPDASHEFAPIIITL-GVIAIIYGALVA 295

                        170       180
                 ....*....|....*....|....*
gi 320526266 170 LNQTQTRKILAFSSISHIGWMTIII 194
Cdd:PRK05846 296 LAQTDIKKLIAYSSISHMGFVTLGI 320
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-194 1.31e-06

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 50.03  E-value: 1.31e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  55 AATKYFLVQAAASALLLFSGMTNAWHTGQ--WDITQL---SYPPSCLLLT-----TAIAIKLGLAPFHFWFPEVLQGSSF 124
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELgakSYPLALELLLyagflIAFGVKLPIFPLHTWLPDAHGEASA 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 320526266 125 TTALLLSTVM-KLPPTTI------LLITSHSLNPTLLTLMSIMSIALGGWMGLNQTQTRKILAFSSISHIGWMTIII 194
Cdd:PRK12561 218 PVSMILAGVLlKMGGYALirfnvqMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGI 294
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 12-192 6.37e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 47.62  E-value: 6.37e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  12 SILLGTM-ITITSNHWMTAWIGLEINTLSIIPLISKPHHPRAIEAATKYF---------------LVQAAASALLLFSGM 75
Cdd:PRK06458 115 QLFLFTMlLALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIiicsvgvafalfgtiLVYANAATVMGDGEM 194

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  76 TNAW-----HTGQWDitqlsypPSCLLLTTAIAI-----KLGLAPFHFWFPEV-LQGSSFTTALLLSTVMKLPPTTIL-- 142
Cdd:PRK06458 195 AILWtellkHASLLD-------PTLMKLAFVFLLigfgtKVGLFPMHAWLPDAhSEAPSPVSALLSGVLLNVALYAVLry 267

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 320526266 143 -LITSHSLNP----TLLTLMSIMSIALGGWMGLNQTQTRKILAFSSISHIGWMTI 192
Cdd:PRK06458 268 yILIDAAIGSdfpgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 80-263 9.61e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 47.61  E-value: 9.61e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  80 HTGQWDITQL-SYPPSCLLLTTAIAI-------KLGLAPFHFWFPEVLQGSSFTTALLLSTVM---------KLPPTtil 142
Cdd:PRK12644 183 AAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG--- 259

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 143 LITSHSLNPTLLTLmSIMSIALGGWMGLNQTQTRKILAFSSISHIGWMTIII-IHNPK-----LTLLTfyIYILMTTSIF 216
Cdd:PRK12644 260 FADVPVWRPTVLVL-GLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVgIGTRDaalagLAMLL--AHALFKAALF 336

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 320526266 217 LTMSM----TNTPSLPTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644 337 LVVGIidhsTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
19-190 1.26e-05

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 47.00  E-value: 1.26e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  19 ITITSNHW---MTAW--IGLEINTLsiipLISKPHHPRAIEAATKYFLVQAAASALLLFSGMTNAWHTGQWDITQL---- 89
Cdd:PRK08168 115 LLVLSDHLlvlIAAWaaISLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLSALwahl 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  90 -SYPPS------CLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTV-----MKLPPTTILLITSHSLNpTLLTLM 157
Cdd:PRK08168 191 aAQGASpslqaaALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAGVvnlggFVLIRFAPLLEQAPPAR-WLLVLV 269

                        170       180       190
                 ....*....|....*....|....*....|...
gi 320526266 158 SIMSIALGGWMGLNQTQTRKILAFSSISHIGWM 190
Cdd:PRK08168 270 GLATAVLAGLVMLTRISIKVRLAWSTVAQMGFM 302
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-268 2.26e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 46.11  E-value: 2.26e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  96 LLLTTAIAIKLGLAPFHFWFPEvlqgsSFTTALLLST-----------VMKLPPTTILLITSHSLNpTLLTLMSIMSIAL 164
Cdd:PRK12665 213 AVLLVAFGIKAAVFPLSFWLPD-----SYPTAPAPVTavfaglltkvgVYAIIRTHTLLFPGGGLD-TLLMVVALLTMVV 286

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 165 GGWMGLNQTQTRKILAFSSISHIGWMTIIIIHNPKLTL--LTFYI--YILMTTSIFLTMSM----TNTPSLPTLMTSWTK 236
Cdd:PRK12665 287 GILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLsgAIYYVahHITVQTTLFLVVGLierqAGSSSLRRLGGLAKA 366

                        170       180       190
                 ....*....|....*....|....*....|..
gi 320526266 237 TPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12665 367 SPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 12-192 2.48e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 45.91  E-value: 2.48e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  12 SILLGTMITI-TSNHWMTAWIGLEINTLSIIPLIS-KPHHPRAIEAATKYFLVQAAASALLLFSGMTNAWHTGQWDITQL 89
Cdd:COG1009  118 LLFMAAMLGLvLSDNLLLLFVFWELVGLCSYLLIGfWYEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSEL 197

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  90 S-----------YPPSCLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKlpptTI---LLITSH---SLNPT 152
Cdd:COG1009  198 LaaaptilssplLTLILLLLLLGAFGKSAQFPLHFWLPDAMEGPTPVSALLHAATMV----KAgvyLLARLSplfALSPV 273

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 320526266 153 LLTLMSIMSIA---LGGWMGLNQTQTRKILAFSSISHIGWMTI 192
Cdd:COG1009  274 WLTVVAIIGAItalFAALIALAQTDIKRVLAYSTVSQLGYMFL 316
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 3.64e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 45.59  E-value: 3.64e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  48 HHPRAIEAATKYFLVQAAASALLLFSGMTNAWHTGQWDITQLSYPPSC--------LLLTTAIAIKLGLA------PFHF 113
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghpLFLITLILIFIGAAaksaqgPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 114 WFPEVLQGSSFTTALLLSTVMkLPPTTILLITSH---SLNPTLLTLMS---IMSIALGGWMGLNQTQTRKILAFSSISHI 187
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATM-VKAGVYLVARIHpifSGTEAWFILVSgtgMITMVLAGFLAFRQTDIKAILAYSTISQL 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 188 GWMTII----IIHNPKLTLLTFYIYIL----MTTSIFLTMSM----TNTPSLPTLMTSWTKTPMLSTTLMLTLLSLAGLP 255
Cdd:PRK12649 315 AYLMTMygytTYHEPGLGVAAATFHLLnhatFKACLFLVAGIvaheAATRDIRKLGGLRKEMPITFIVASIAALAMAGIP 394


                 ....*...
gi 320526266 256 PLTGFLPK 263
Cdd:PRK12649 395 PLNGFLSK 402
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
96-268 7.44e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 44.56  E-value: 7.44e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  96 LLLTTAIAIKLGLAPFhFWFPEVLQGSSFTTALLLSTVMK-------LPPTTILLITSHSLNPTLLTLMSIMSIALGGWM 168
Cdd:PRK12663 211 LLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVIGALG 289

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 169 GLNQTQTRKILAFSSISHIGWMTI-IIIHNPK-LTLLTFY---IYILMTTSIFLT---MSMTNTPSLPTLMTSWTKTPML 240
Cdd:PRK12663 290 ALAYKDIRRIAGYQVISSIGFILLgLALGTPAgINGAIFYlvhDMVVKTALFLIAgslVRLTGYRSLQYLGGLYRKEPLF 369

                        170       180
                 ....*....|....*....|....*...
gi 320526266 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12663 370 GALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 96-272 1.31e-04

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 43.66  E-value: 1.31e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  96 LLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTV-MKLPPTTILLITSHSLNPTL-----LTLMSIMSIALGGWMG 169
Cdd:PRK08042 184 LLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTVvMKIGLLGILTLSLLGGNAPLwwgvaLLVLGMITAFVGGLYA 263

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 170 LNQTQTRKILAFSSISHIG--------WMTIIIIHNPKLTLLTFY--IYILMTTSIFLTMSM---------TNTPSLPTL 230
Cdd:PRK08042 264 LMEHNIQRLLAYHTLENIGiillglgaGVTGIALEQPALIALGLVggLYHLLNHSLFKSVLFlgagsvwfrTGHRDIEKL 343

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 320526266 231 MTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIK 272
Cdd:PRK08042 344 GGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFK 385
PRK12650 PRK12650
DUF4040 family protein;
98-263 1.35e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 43.88  E-value: 1.35e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  98 LTTAIAIKLGLA--------PFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITS--HSLNPT---LLTLMSIMSIAL 164
Cdd:PRK12650 206 LTTVVAVLIAVAaftksaqfPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSpvFHDVAVwnwLLIIVGMITALM 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 165 GGWMGLNQTQTRKILAFSSISHIGW------------MTIIIIHnpklTLltfyIYILMTTSIFLTMSM----TNTPSLP 228
Cdd:PRK12650 286 GAVFAVQKTDLKKLTAYSTVSQLGWivatigvgtpfaLTAAVVH----TL----AHALFKSSLFMLIGVvdhqAGTRDIR 357

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 320526266 229 TLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12650 358 RLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 13-271 1.76e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 43.02  E-value: 1.76e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  13 ILLGTM-ITITSNHWMTAWIGLEINTLSIIPLISKPHHPRAIEAATKYFLVQAAASALLLFSGMTNAWHTGQWDITQLS- 90
Cdd:PRK07234 102 ILHGSVnAAFVCADLISLYVALEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLAt 181

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  91 YPPSCL-LLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNPT--LLTLMSIMSIALGGW 167
Cdd:PRK07234 182 ADPEAFaLIALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLdlIVRIFGVGTALLGVL 261

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 168 MGLNQTQTRKILAFSSISHIGWmtiiIIHNPKLTLLTFYIYILMTTSIFLTM----SMTNTPSLPTLMTSWTKTPMLSTT 243
Cdd:PRK07234 262 FALLEKDLKRMLAFSTISQLGF----ILAAPLVGGLYALAHGLVKSTLFLCAgalpSRNFTELISQMLGIGKWIPLTMAS 337

                        250       260
                 ....*....|....*....|....*...
gi 320526266 244 LMLtllslAGLPPLTGFLPKWLIIQELI 271
Cdd:PRK07234 338 FSI-----AGFPLLAGFVSKVLTLKNLL 360
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 12-279 2.59e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 42.50  E-value: 2.59e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  12 SILLGTMITITSNhWMTAWIGLEINTLSIIPLISKPHHPRAIEAATKYFLVQAAASALLLFSGMT---NAWHTGQW-DIT 87
Cdd:PRK06589 125 TILIGVLIALSSD-LFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVIliyTKTGNLDFvSGG 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  88 QLSYPPSCLLLTTAIA--IKLGLAPFHFWFPEVLQGSSFTTALLLSTVM----KLPPTTILLITSHSLNPTLLTLMS--- 158
Cdd:PRK06589 204 LFSKNQSIILLLMFIYgiAKTAIFPVHSWLPAAMVAHYPVSALLHAVIVvktgLFCIYKILLYIFGLSYLQRIFAEFnwl 283

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 159 ----IMSIALGGWMGLNQTQTRKILAFSSISHIGW--MTIIIIHNPKLTLLTFYIYILMTTSIFLTMSM------TNTPS 226
Cdd:PRK06589 284 ifipIVSIFYSSLKALKTDNIKKILAYSTISQLSLalLSAFILTPKALGAAILHLVSHSFAKICLFYSMgsiyslKKEDQ 363

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 320526266 227 LPTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTA 279
Cdd:PRK06589 364 VDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLS 416
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-272 2.77e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 42.41  E-value: 2.77e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266   4 LTKLISASSILLGTMITI-TSNHWMTAWIGLEINTLSIIPLISKPHHPRAIEAATKYFLVQAAASALLLFS--------- 73
Cdd:PRK12662 109 IPSFYSAFLLCLGGLLGIlVSNDVFNIYVFLEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyaitg 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  74 --GMTNAWHTGQWDITQLSYPPSCLLLTTAIAIKLGLAPFHFWFPEVLQGS-SFTTALLLSTVMKLPPTTI--------- 141
Cdd:PRK12662 189 tlNMGDMFLIIQDLPTNRAIQIGVLFIMVGLFIKAALFPFHKWLIQAYSEApSFISVFFSGTSTKVMIYLIirivydvfk 268

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 142 --LLITSHSLNPTLLTLmSIMSIALGGWMGLNQTQTRKILAFSSISHIGWMTIIIIHNPKLTLLTFYIYI----LMTTSI 215
Cdd:PRK12662 269 anFVFTTLPFNNVFMIL-AALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsIVKSAL 347

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 320526266 216 FLTMSMT----NTPSLPTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIK 272
Cdd:PRK12662 348 FMVSGSIsyhfGTTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIK 408
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 59-188 6.76e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 41.64  E-value: 6.76e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  59 YFLVQAAASALLLFSGMTNAW-HTGQWDITQLSYPP-----SCLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLST 132
Cdd:PRK08667 166 FYFVMTQLSTVFLMLGIIVLFiQTGSFELSPLGASAgilslVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSG 245

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 320526266 133 VM-KLPPTTILLITSHSLNP-----TLLTLMSIMSIALGGWMGLNQTQTRKILAFSSISHIG 188
Cdd:PRK08667 246 VMlKVAVYGLVRFLMDVLSPelwwgVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIG 307
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 91-266 8.67e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 41.06  E-value: 8.67e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  91 YPPSCLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNPT-----LLTLMSIMSIALG 165
Cdd:PRK12647 194 YLAILLLVLGGAFTKSAQFPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTplwqtILPLFGGLTMLTG 273

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 166 GWMGLNQTQTRKILAFSSISHIGWMTIIIIHNPKLTLLTFYIYI----LMTTSIFLTMSM----TNTPSLPTLMTSWTKT 237
Cdd:PRK12647 274 ALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLvahsLYKGALFMVAGIidheTGTRDITKLGGLRRAM 353

                        170       180
                 ....*....|....*....|....*....
gi 320526266 238 PMLSTTLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK12647 354 PITAAAALLAALSMAGLPPLFGFLAKELI 382
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-215 1.29e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 40.68  E-value: 1.29e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 101 AIAIKLGLAPFHFWFPEV-LQGSSFTTALLLSTVMKLP-------PTTILLITSHSLNPTLLTlMSIMSIALGGWMGLNQ 172
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAhVEAPVAGSVLLAGILLKLGgyglvrlSWPILPLGAQNLAPAVIA-MGIVGIVYGSFATCRQ 317

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 320526266 173 TQTRKILAFSSISHIGWMTIIIIHNpKLTLLTFYIYILMTTSI 215
Cdd:MTH00226 318 IDVKRLVAYSSVAHMGLVSITLVTH-DIIGLTGSIFIMLAHGI 359
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
38-190 1.44e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 40.45  E-value: 1.44e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  38 LSIIPL---ISKPHHPRAIEAATKYFLVQAAASALLLFSGMTNAWHTGqwdITQLSYPP---------SCLLLTTAI--- 102
Cdd:PRK06473 138 LELIPLyllIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSG---ASSFDYEPlrshtlplsTQLLLLAPIlvg 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 103 -AIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNPTL-------LTLMSIMSIALGGWMGLNQTQ 174
Cdd:PRK06473 215 fGIKIPLVPFHTWLPDAHVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAwvylapwLATWAVVSVLYGASCAIAQKD 294

                        170
                 ....*....|....*.
gi 320526266 175 TRKILAFSSISHIGWM 190
Cdd:PRK06473 295 MKKMVAYSSIGHMGYI 310
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 105-268 3.50e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 39.17  E-value: 3.50e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 105 KLGLapfHFWFPEVLQGSSFTTALLLSTVMkLPPTTILLITSHSL---NPTLLTLMSI---MSIALGGWMGLNQTQTRKI 178
Cdd:MTH00032 241 QLGL---HTWLPDAMEGPTPVSALIHAATM-VTAGVFLMIRSFPLfekAPLTLLIITIfgaLTAFFAATVGLVQNDLKKV 316

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266 179 LAFSSISHIGWMTIII----IHNPKLTLL---TFYIYILMTTSIFLTMSMTNTPSLPTLMTSWTKT-PMLSTTLMLTLLS 250
Cdd:MTH00032 317 IAYSTCSQLGYMVLIIgiegSHNVGLFHLvnhAFFKALLFLSAGSVIHSTTVDEQDMRKMGGLIHSiPFTYTMMLIGSFS 396

                        170
                 ....*....|....*...
gi 320526266 251 LAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00032 397 IMGLPYLTGFYSKDLILE 414
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-194 8.26e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 37.76  E-value: 8.26e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526266  55 AATKYFLVQAAASALLLFSGMTNAWHTG--QWDITQLS---YPPSCLLLT-----TAIAIKLGLAPFHFWFPEVLQGSSF 124
Cdd:PRK02546 166 AATKFILYTAGSSLFILLAALAMAFYGDtpTFDMTALAakdFGLGFQLLCyagllIAYGVKLPIVPLHTWLPDAHGEATA 245

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 320526266 125 TTALLLSTVMK-------LPPTTILLITSHSLNPTLLTLMSIMSIALGGWMGLNQTQTRKILAFSSISHIGWMTIII 194
Cdd:PRK02546 246 PVHMLLAGILLkmggyalLRMNAGMLPDAHAQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGI 322
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH