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Conserved domains on  [gi|342161501|gb|AEL16610|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Pseudogmothela yonlii]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 super family cl33362
NADH dehydrogenase subunit 5; Provisional
 1-87 1.40e-31

NADH dehydrogenase subunit 5; Provisional


The actual alignment was detected with superfamily member MTH00165:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 114.85  E-value: 1.40e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161501   1 IHSLNDFQDIRFMGSIASFMPLISVCFNVSILSLCGIPFLAGFYSKDLILEMVCFSWINCFIFFLYFVSTGLTSSYSFRL 80
Cdd:MTH00165 316 IHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRL 395


                 ....*..
gi 342161501  81 IYYSMSG 87
Cdd:MTH00165 396 IYYSMSG 402
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-87 1.40e-31

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 114.85  E-value: 1.40e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161501   1 IHSLNDFQDIRFMGSIASFMPLISVCFNVSILSLCGIPFLAGFYSKDLILEMVCFSWINCFIFFLYFVSTGLTSSYSFRL 80
Cdd:MTH00165 316 IHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRL 395


                 ....*..
gi 342161501  81 IYYSMSG 87
Cdd:MTH00165 396 IYYSMSG 402
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-82 7.54e-15

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 67.48  E-value: 7.54e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161501   1 IHSLNDfQDIRFMGSIASFMPLISVCFNVSILSLCGIPFLAGFYSKDLILE-MVCFSWINCFIFFLYFVSTGLTSSYSFR 79
Cdd:COG1009  348 IHATGT-RDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTAFYSFR 426


                 ...
gi 342161501  80 LIY 82
Cdd:COG1009  427 LFF 429
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-53 6.64e-08

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 47.69  E-value: 6.64e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 342161501    1 IHSLNDFQDIRFMGSIASFMPLISVCFNVSILSLCGIPFLAGFYSKDLILEMV 53
Cdd:pfam00361 223 IYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAA 275
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-87 1.40e-31

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 114.85  E-value: 1.40e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161501   1 IHSLNDFQDIRFMGSIASFMPLISVCFNVSILSLCGIPFLAGFYSKDLILEMVCFSWINCFIFFLYFVSTGLTSSYSFRL 80
Cdd:MTH00165 316 IHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRL 395


                 ....*..
gi 342161501  81 IYYSMSG 87
Cdd:MTH00165 396 IYYSMSG 402
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-87 2.11e-23

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 91.83  E-value: 2.11e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161501   1 IHSLNDFQDIRFMGSIASFMPLISVCFNVSILSLCGIPFLAGFYSKDLILEMVCFSWINCFIFFLYFVSTGLTSSYSFRL 80
Cdd:MTH00151 313 IHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTALYSARL 392


                 ....*..
gi 342161501  81 IYYSMSG 87
Cdd:MTH00151 393 SFCLVWG 399
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 1-87 4.25e-23

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 90.99  E-value: 4.25e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161501   1 IHSLNDFQDIRFMGSIASFMPLISVCFNVSILSLCGIPFLAGFYSKDLILEMVCFSWINCFIFFLYFVSTGLTSSYSFRL 80
Cdd:MTH00004 346 IHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSFTAAYSLRM 425


                 ....*..
gi 342161501  81 IYYSMSG 87
Cdd:MTH00004 426 ILLVQTG 432
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-87 5.93e-23

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 90.47  E-value: 5.93e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161501   1 IHSLNDFQDIRFMGSIASFMPLISVCFNVSILSLCGIPFLAGFYSKDLILEMVCFSWINCFIFFLYFVSTGLTSSYSFRL 80
Cdd:MTH00209 312 IHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLTAAYSMRL 391


                 ....*..
gi 342161501  81 IYYSMSG 87
Cdd:MTH00209 392 SYFSLWG 398
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 1-85 2.15e-21

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 86.04  E-value: 2.15e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161501   1 IHSLNDFQDIRFMGSIASFMPLISVCFNVSILSLCGIPFLAGFYSKDLILEMVCFSWINCFIFFLYFVSTGLTSSYSFRL 80
Cdd:MTH00137 352 IHSLNDEQDIRKMGGLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSFTAVYSLRV 431


                 ....*.
gi 342161501  81 IYY-SM 85
Cdd:MTH00137 432 VFFvSM 437
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-87 5.82e-21

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 84.90  E-value: 5.82e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161501   1 IHSLNDFQDIRFMGSIASFMPLISVCFNVSILSLCGIPFLAGFYSKDLILEMVCFSWINCFIFFLYFVSTGLTSSYSFRL 80
Cdd:MTH00108 347 IHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTAAYSTRI 426


                 ....*..
gi 342161501  81 IYYSMSG 87
Cdd:MTH00108 427 IFFALLG 433
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 1-83 1.91e-20

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 83.48  E-value: 1.91e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161501   1 IHSLNDFQDIRFMGSIASFMPLISVCFNVSILSLCGIPFLAGFYSKDLILEMVCFSWINCFIFFLYFVSTGLTSSYSFRL 80
Cdd:MTH00208 373 IHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLLTAVYSFRI 452


                 ...
gi 342161501  81 IYY 83
Cdd:MTH00208 453 IFF 455
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-87 3.96e-20

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 82.69  E-value: 3.96e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161501   1 IHSLNDFQDIRFMGSIASFMPLISVCFNVSILSLCGIPFLAGFYSKDLILEMVCFSWINCFIFFLYFVSTGLTSSYSFRL 80
Cdd:MTH00211 341 IHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSLTAAYSFRL 420


                 ....*..
gi 342161501  81 IYYSMSG 87
Cdd:MTH00211 421 IFLSLGG 427
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 1-84 4.96e-20

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 82.26  E-value: 4.96e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161501   1 IHSLNDFQDIRFMGSIASFMPLISVCFNVSILSLCGIPFLAGFYSKDLILEMVCFSWINCFIFFLYFVSTGLTSSYSFRL 80
Cdd:MTH00066 344 IHSLNDEQDIRKMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSFTAVYSFRI 423


                 ....
gi 342161501  81 IYYS 84
Cdd:MTH00066 424 IYFS 427
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 1-81 9.37e-19

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 78.66  E-value: 9.37e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161501   1 IHSLNDFQDIRFMGSIASFMPLISVCFNVSILSLCGIPFLAGFYSKDLILEmVCFSWINCFIFFLYFVSTGLTSSYSFRL 80
Cdd:PRK06590 354 IHAMHHEQDIRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILE-AAFANGHINLFVAGLVGAFLTAFYSFRL 432


                 .
gi 342161501  81 I 81
Cdd:PRK06590 433 I 433
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-85 1.24e-18

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 78.27  E-value: 1.24e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161501   1 IHSLNDFQDIRFMGSIASFMPLISVCFNVSILSLCGIPFLAGFYSKDLILEMVCFSWINCFIFFLYFVSTGLTSSYSFRL 80
Cdd:MTH00207 316 IHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALTAAYSTRF 395


                 ....*
gi 342161501  81 IYYSM 85
Cdd:MTH00207 396 TLAVL 400
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 1-84 3.22e-17

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 74.34  E-value: 3.22e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161501   1 IHSLNDFQDIRFMGSIASFMPLISVCFNVSILSLCGIPFLAGFYSKDLILEMVCFSWINCFIFFLYFVSTGLTSSYSFRL 80
Cdd:MTH00020 347 IHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALLTAFYSIRL 426


                 ....
gi 342161501  81 IYYS 84
Cdd:MTH00020 427 IYLT 430
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 1-82 1.42e-15

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 69.65  E-value: 1.42e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161501   1 IHSLNDFQDIRFMGSIASFMPLISVCFNVSILSLCGIPFLAGFYSKDLILEMVCFSWINCFIFFLYFVSTGLTSSYSFRL 80
Cdd:MTH00210 348 IHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALLTAFYSIRL 427


                 ..
gi 342161501  81 IY 82
Cdd:MTH00210 428 IY 429
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-82 7.54e-15

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 67.48  E-value: 7.54e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161501   1 IHSLNDfQDIRFMGSIASFMPLISVCFNVSILSLCGIPFLAGFYSKDLILE-MVCFSWINCFIFFLYFVSTGLTSSYSFR 79
Cdd:COG1009  348 IHATGT-RDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTAFYSFR 426


                 ...
gi 342161501  80 LIY 82
Cdd:COG1009  427 LFF 429
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
8-87 5.52e-13

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 62.35  E-value: 5.52e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161501   8 QDIRFMGSIASFMPLISVCFNVSILSLCGIPFLAGFYSKDLILEMVCFSwiNCFIFFLYFVSTGLTSSYSFRLIYYSMSG 87
Cdd:PRK07376 379 QDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA--NPALWFVGFLTAGMTAFYMFRMYFLTFEG 456
ndhF CHL00025
NADH dehydrogenase subunit 5
 8-82 1.72e-08

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 49.51  E-value: 1.72e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 342161501   8 QDIRFMGSIASFMPLISVCFNVSILSLCGIPFLAGFYSKDLILEMvcfSWINCFIF-FLYFVSTGLTSSYSFRlIY 82
Cdd:CHL00025 379 QNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEILND---SWLYSPIFaIIAWSTAGLTAFYMFR-IY 450
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-53 6.64e-08

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 47.69  E-value: 6.64e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 342161501    1 IHSLNDFQDIRFMGSIASFMPLISVCFNVSILSLCGIPFLAGFYSKDLILEMV 53
Cdd:pfam00361 223 IYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAA 275
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 1-52 1.91e-06

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 43.79  E-value: 1.91e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 342161501   1 IHSLN-DFQDIRFMGSIASFMPLISVCFNVSILSLCGIPFLAGFYSKDLILEM 52
Cdd:MTH00032 363 IHSTTvDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILEL 415
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 9-51 1.90e-05

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 40.90  E-value: 1.90e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 342161501   9 DIRFMGSIASFMPLISVCFNVSILSLCGIPFLAGFYSKDLILE 51
Cdd:COG0651  355 DLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQ 397
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 1-82 6.68e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 36.43  E-value: 6.68e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161501   1 IHSLNDFQDIRFMGSIASFMPLISVCFNVSILSLCGIPFLAGFYSKDLILEMVCFSWINCFIFFLYFVSTGLTSSYSFRL 80
Cdd:MTH00095 300 IHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFLTFGYSYRL 379


                 ..
gi 342161501  81 IY 82
Cdd:MTH00095 380 WK 381
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 9-51 8.71e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 36.10  E-value: 8.71e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 342161501   9 DIRFMGSIASFMPLISVCFNVSILSLCGIPFLAGFYSKDLILE 51
Cdd:PRK12667 378 DIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFN 420
PRK12650 PRK12650
DUF4040 family protein;
9-81 3.03e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 34.63  E-value: 3.03e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 342161501   9 DIRFMGSIASFMPLISVCFNVSILSLCGIPFLAGFYSKDLILEMVCFSWINCFIFFLYFVSTGLTS----SYSFRLI 81
Cdd:PRK12650 355 DIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFLEAPGGNAGVVLLLVGAALGAvftfAYSARLV 431
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-82 3.90e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 34.41  E-value: 3.90e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161501   1 IHSLNDFQDIRFMGSIASFMPLISVCFNVSILSLCGIPFLAGFYSKDLILEMVCFS---WINCFIFFLYFVSTGLTSSYS 77
Cdd:PRK06589 355 IYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQnqpWLSIIVMLVVIASSILSALYL 434


                 ....*
gi 342161501  78 FRLIY 82
Cdd:PRK06589 435 LKILS 439
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
21-46 6.43e-03

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 33.87  E-value: 6.43e-03
                         10        20
                 ....*....|....*....|....*.
gi 342161501  21 PLISVCFNVSILSLCGIPFLAGFYSK 46
Cdd:PRK02504 371 PLLTLGLSLCLLSLGGIPPLAGFFGK 396
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 10-51 9.23e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 33.40  E-value: 9.23e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 342161501  10 IRFMGSIASFMPLISVCFNVSILSLCGIPFLAGFYSKDLILE 51
Cdd:PRK12665 357 LRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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