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Conserved domains on  [gi|342221218|gb|AEL17813|]
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hypothetical protein TURBIDO_54 [Mycobacterium phage Turbido]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GP52 super family cl38741
Phage gene product 52; This is a family of unknown function found in Mycobacterium phage.
 1-60 2.59e-34

Phage gene product 52; This is a family of unknown function found in Mycobacterium phage.


The actual alignment was detected with superfamily member pfam17468:

Pssm-ID: 340183  Cd Length: 61  Bit Score: 110.46  E-value: 2.59e-34
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 342221218   1 MHNIMDPTFNGMPGSEMYRGEVFPELFPG-PRMRLENWPQEDLEQYVGGIFTPGYGERKTA 60
Cdd:pfam17468  1 MHNILDPTFNGMPGSELYRAEIFPELFPGkPPMMLENWSQDDLELYVGGCFTPGYGERKAA 61
 
Name Accession Description Interval E-value
GP52 pfam17468
Phage gene product 52; This is a family of unknown function found in Mycobacterium phage.
 1-60 2.59e-34

Phage gene product 52; This is a family of unknown function found in Mycobacterium phage.


Pssm-ID: 340183  Cd Length: 61  Bit Score: 110.46  E-value: 2.59e-34
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 342221218   1 MHNIMDPTFNGMPGSEMYRGEVFPELFPG-PRMRLENWPQEDLEQYVGGIFTPGYGERKTA 60
Cdd:pfam17468  1 MHNILDPTFNGMPGSELYRAEIFPELFPGkPPMMLENWSQDDLELYVGGCFTPGYGERKAA 61
 
Name Accession Description Interval E-value
GP52 pfam17468
Phage gene product 52; This is a family of unknown function found in Mycobacterium phage.
 1-60 2.59e-34

Phage gene product 52; This is a family of unknown function found in Mycobacterium phage.


Pssm-ID: 340183  Cd Length: 61  Bit Score: 110.46  E-value: 2.59e-34
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 342221218   1 MHNIMDPTFNGMPGSEMYRGEVFPELFPG-PRMRLENWPQEDLEQYVGGIFTPGYGERKTA 60
Cdd:pfam17468  1 MHNILDPTFNGMPGSELYRAEIFPELFPGkPPMMLENWSQDDLELYVGGCFTPGYGERKAA 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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