read-through protein [Enterobacteria phage SP]
Protein Classification
List of domain hits
| Name | Accession | Description | Interval | E-value | ||||
| Levi_coat super family | cl28115 | Levivirus coat protein; The Levivirus coat protein forms the bacteriophage coat that ... |
2-132 | 5.63e-63 | ||||
Levivirus coat protein; The Levivirus coat protein forms the bacteriophage coat that encapsidates the viral RNA. 180 copies of this protein form the virion shell. The MS2 bacteriophage coat protein controls two distinct processes: sequence-specific RNA encapsidation and repression of replicase translation-by binding to an RNA stem-loop structure of 19 nucleotides containing the initiation codon of the replicase gene. The binding of a coat protein dimer to this hairpin shuts off synthesis of the viral replicase, switching the viral replication cycle to virion assembly rather than continued replication. The actual alignment was detected with superfamily member pfam01819: Pssm-ID: 421570 Cd Length: 132 Bit Score: 196.10 E-value: 5.63e-63
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| Read-through super family | cl25129 | Read-through domain; The Enterobacteria phage minor coat protein A1 is a C-terminally extended ... |
163-329 | 1.49e-48 | ||||
Read-through domain; The Enterobacteria phage minor coat protein A1 is a C-terminally extended version of the coat protein formed when ribosomes read-through a leaky stop codon. This is the C-terminal read-through domain of A1. The actual alignment was detected with superfamily member pfam16814: Pssm-ID: 293419 Cd Length: 182 Bit Score: 161.03 E-value: 1.49e-48
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| Name | Accession | Description | Interval | E-value | ||||
| Levi_coat | pfam01819 | Levivirus coat protein; The Levivirus coat protein forms the bacteriophage coat that ... |
2-132 | 5.63e-63 | ||||
Levivirus coat protein; The Levivirus coat protein forms the bacteriophage coat that encapsidates the viral RNA. 180 copies of this protein form the virion shell. The MS2 bacteriophage coat protein controls two distinct processes: sequence-specific RNA encapsidation and repression of replicase translation-by binding to an RNA stem-loop structure of 19 nucleotides containing the initiation codon of the replicase gene. The binding of a coat protein dimer to this hairpin shuts off synthesis of the viral replicase, switching the viral replication cycle to virion assembly rather than continued replication. Pssm-ID: 396403 Cd Length: 132 Bit Score: 196.10 E-value: 5.63e-63
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| Read-through | pfam16814 | Read-through domain; The Enterobacteria phage minor coat protein A1 is a C-terminally extended ... |
163-329 | 1.49e-48 | ||||
Read-through domain; The Enterobacteria phage minor coat protein A1 is a C-terminally extended version of the coat protein formed when ribosomes read-through a leaky stop codon. This is the C-terminal read-through domain of A1. Pssm-ID: 293419 Cd Length: 182 Bit Score: 161.03 E-value: 1.49e-48
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| Name | Accession | Description | Interval | E-value | ||||
| Levi_coat | pfam01819 | Levivirus coat protein; The Levivirus coat protein forms the bacteriophage coat that ... |
2-132 | 5.63e-63 | ||||
Levivirus coat protein; The Levivirus coat protein forms the bacteriophage coat that encapsidates the viral RNA. 180 copies of this protein form the virion shell. The MS2 bacteriophage coat protein controls two distinct processes: sequence-specific RNA encapsidation and repression of replicase translation-by binding to an RNA stem-loop structure of 19 nucleotides containing the initiation codon of the replicase gene. The binding of a coat protein dimer to this hairpin shuts off synthesis of the viral replicase, switching the viral replication cycle to virion assembly rather than continued replication. Pssm-ID: 396403 Cd Length: 132 Bit Score: 196.10 E-value: 5.63e-63
|
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| Read-through | pfam16814 | Read-through domain; The Enterobacteria phage minor coat protein A1 is a C-terminally extended ... |
163-329 | 1.49e-48 | ||||
Read-through domain; The Enterobacteria phage minor coat protein A1 is a C-terminally extended version of the coat protein formed when ribosomes read-through a leaky stop codon. This is the C-terminal read-through domain of A1. Pssm-ID: 293419 Cd Length: 182 Bit Score: 161.03 E-value: 1.49e-48
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| Blast search parameters | ||||
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