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Conserved domains on  [gi|350430917|gb|AEQ28426|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Hapalopsittaca amazonina]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 2.09e-141

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 404.20  E-value: 2.09e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917   1 MAPTTKLISALSILLGTTLTITSNHWATAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASTLVLFSSTVNAQH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  81 TGQWDITQLTYPPACVLLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTAMKLPPTTLLLTSSHSLNPTLLTTMSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 161 SITLGGWMGLNQTQTRKIMAFSSISHLGWMMVTITYNPKLTLLAFFTYTLMTSSVFLTMNTTNTLKLSTLMIAWTKAPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 241 STTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTATTISMLSLLGLFFYLRLAYCSTITLPPNPSSKTKQWSTKSS 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 350430917 321 TNPLIPTLISLSISLLPLSPMILTIV 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 2.09e-141

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 404.20  E-value: 2.09e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917   1 MAPTTKLISALSILLGTTLTITSNHWATAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASTLVLFSSTVNAQH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  81 TGQWDITQLTYPPACVLLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTAMKLPPTTLLLTSSHSLNPTLLTTMSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 161 SITLGGWMGLNQTQTRKIMAFSSISHLGWMMVTITYNPKLTLLAFFTYTLMTSSVFLTMNTTNTLKLSTLMIAWTKAPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 241 STTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTATTISMLSLLGLFFYLRLAYCSTITLPPNPSSKTKQWSTKSS 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 350430917 321 TNPLIPTLISLSISLLPLSPMILTIV 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 11-217 1.43e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 100.96  E-value: 1.43e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  11 LSILLGTTLTITSNHWATAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQATASTLVLF--------SSTVN---- 77
Cdd:COG1007  109 LFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlagi 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  78 AQHTGQWDITQLTYPPACVLLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTAMKL----PPTTLLLTSSHSLNP-- 151
Cdd:COG1007  189 AAALAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdw 268

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 350430917 152 -TLLTTMSIMSITLGGWMGLNQTQTRKIMAFSSISHLGWMMVTITYNPKL----TLLAFFTYTLMTSSVFL 217
Cdd:COG1007  269 qLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFA 339
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 1.00e-18

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 85.06  E-value: 1.00e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917   23 SNHWATAWAGLEINTLSIIPMI-SKSHHPRAIEAATKYFLVQATASTLVLFSSTVNAQHTGQWDITQL-TYPPAC----- 95
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELsKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917   96 -----VLLTIAIAIKLGLTPFHFWFPEVLQGSSLT-TAMLLSTAMKLPPTTLLLTSS--HSLNPT---LLTTMSIMSITL 164
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  165 GGWMGLNQTQTRKIMAFSSISHLGWMMVTI----TYNPKLTLLAFFTYTLMTSSVFLTMNTTNTLKLSTLMIA-----WT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRdygglAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 350430917  236 KAPMLSTTLMLTLLSLSGLPPLTGFLPKWLIMQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 11-297 3.49e-18

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 85.00  E-value: 3.49e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917   11 LSILLGTTLTITSNHWATAWAGLEINTLSI-IPMISKSHHPRAIEAATKYFLVQATASTLVLFSSTV------------- 76
Cdd:TIGR01770 109 LFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLiygftgslnfedl 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917   77 -NAQHTGQWDITQLTYppACVLLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTAMKL----PPTTLLLTSSHSLNP 151
Cdd:TIGR01770 189 lLFLSNGMLNISLLLL--GIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIaifaVFLRLFLYILFGFSE 266

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  152 T---LLTTMSIMSITLGGWMGLNQTQTRKIMAFSSISHLGWMMVTITYNPKL----TLLAFFTYTLMTS---SVFLTMNT 221
Cdd:TIGR01770 267 AwqiFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLgafGVLSLLRS 346

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 350430917  222 TN---TLKLSTLMIAWTKAPMLSTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTATTISMLSLLGLFFYLRLA 297
Cdd:TIGR01770 347 YKdewIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 2.09e-141

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 404.20  E-value: 2.09e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917   1 MAPTTKLISALSILLGTTLTITSNHWATAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASTLVLFSSTVNAQH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  81 TGQWDITQLTYPPACVLLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTAMKLPPTTLLLTSSHSLNPTLLTTMSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 161 SITLGGWMGLNQTQTRKIMAFSSISHLGWMMVTITYNPKLTLLAFFTYTLMTSSVFLTMNTTNTLKLSTLMIAWTKAPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 241 STTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTATTISMLSLLGLFFYLRLAYCSTITLPPNPSSKTKQWSTKSS 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 350430917 321 TNPLIPTLISLSISLLPLSPMILTIV 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-324 1.33e-113

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 333.70  E-value: 1.33e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917   1 MAPTTKLISALSILLGTTLTITSNHWATAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASTLVLFSSTVNAQH 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  81 TGQWDITQLTYPPACVLLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTAMKLPPTTLLLTSSHSlNPTLLTTMSIM 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 161 SITLGGWMGLNQTQTRKIMAFSSISHLGWMMVTITYNPKLTLLAFFTYTLMTSSVFLTMNTTNTLKLSTLMIAWTKAPML 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 241 STTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTATTISMLSLLGLFFYLRLAYCSTITLPPNPSSKTKQWSTKSS 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319


                 ....
gi 350430917 321 TNPL 324
Cdd:MTH00135 320 QLTL 323
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-327 1.21e-112

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 331.12  E-value: 1.21e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917   1 MAPTTKLISALSILLGTTLTITSNHWATAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASTLVLFSSTVNAQH 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  81 TGQWDITQLTYPPACVLLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTAMKLPPTTLLLTSSHSLNPTLLTTMSIM 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 161 SITLGGWMGLNQTQTRKIMAFSSISHLGWMMVTITYNPKLTLLAFFTYTLMTSSVFLTMNTTNTLKLSTLMIAWTKAPML 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 241 STTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTATTISMLSLLGLFFYLRLAYCSTITLPPNPSSKTKQWSTKSS 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320


                 ....*..
gi 350430917 321 TNPLIPT 327
Cdd:MTH00070 321 TNNLLSL 327
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-327 2.07e-101

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 302.54  E-value: 2.07e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917   1 MAPTTKLISALSILLGTTLTITSNHWATAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASTLVLFSSTVNAQH 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  81 TGQWDITQLTYPPACVLLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTAMKLPPTTLLLTSSHSLNPTLLTTMSIM 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 161 SITLGGWMGLNQTQTRKIMAFSSISHLGWMMVTITYNPKLTLLAFFTYTLMTSSVFLTMNTTNTLKLSTLMIAWTKAPML 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 241 STTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTATTISMLSLLGLFFYLRLAYCSTITL-PPNPSSKTKQWSTKS 319
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMfPSTNNMKMKWQFENT 320


                 ....*...
gi 350430917 320 STNPLIPT 327
Cdd:MTH00105 321 KPMTLLPT 328
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-326 3.32e-85

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 261.06  E-value: 3.32e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917   1 MAPTTKLISALSILLGTTLTITSNHWATAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASTLVLFSSTVNAQH 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  81 TGQWDITQLTYPPACVLLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTAMKLPPTTLLLTSSHSLNPTLLTTMSIM 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 161 SITLGGWMGLNQTQTRKIMAFSSISHLGWMMVTITYNPKLTLLAFFTYTLMTSSVFLTMNTTNTLKLSTLMIAWTKAPML 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 241 STTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTATTISMLSLLGLFFYLRLAYCSTITLPPNPSSKTKQWSTKSS 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320


                 ....*.
gi 350430917 321 TNPLIP 326
Cdd:MTH00200 321 SNLLVG 326
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 11-326 4.34e-76

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 237.91  E-value: 4.34e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  11 LSILLGTTLTITSNHWATAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASTLVLFSSTVNAQHTGQWDITQLT 90
Cdd:MTH00041  11 TSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPL 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  91 YPPACVLLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTAMKLPPTTLLLTSSHSLNPTLLTTMSIMSITLGGWMGL 170
Cdd:MTH00041  91 NTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGL 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 171 NQTQTRKIMAFSSISHLGWMMVTITYNPKLTLLAFFTYTLMTSSVFLTMNTTNTLKLSTLMIAWTKAPMLSTTLMLTLLS 250
Cdd:MTH00041 171 NQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILS 250

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 350430917 251 LSGLPPLTGFLPKWLIMQELIKQETTTTATTISMLSLLGLFFYLRLAYCSTITLPPNPSSKTKQWSTKSSTNPLIP 326
Cdd:MTH00041 251 LGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGV 326
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-325 5.70e-51

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 172.32  E-value: 5.70e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917   1 MAPTTKLISALSILLGTTLTITSNHWATAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASTLVLFSSTVNAQh 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  81 tgqwdITQLTYPPACVLLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTAMKLPPTTLLltsSHSLNPTLLTTMSIM 160
Cdd:MTH00160  81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 161 SITLGGWMGLNQTQTRKIMAFSSISHLGWMMVTITYNPKLTLLAFFTYTLMTSSVFLTMNTTNTLKLSTLMIAWTKAPML 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 241 STTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTATTISMLSLLGLFFYLRLAYCSTITLPPNPSSKTKQWSTKSS 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFS 312


                 ....*
gi 350430917 321 TNPLI 325
Cdd:MTH00160 313 LILNF 317
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 13-320 9.45e-42

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 148.11  E-value: 9.45e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  13 ILLGTTLTITSNHWATAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASTLVLFSSTVNAQHTGQWDITqltyp 92
Cdd:MTH00144  13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM----- 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  93 pacVLLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTAMKLPPttLLLTSSHSLNPTLLTT---MSIMSITLGGWMG 169
Cdd:MTH00144  88 ---SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAP--LFLLSNFLDLYWLAYLlcvISVLSALVGSIGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 170 LNQTQTRKIMAFSSISHLGWMMVTITYNPKLTLLAFFTYTLMTSSVFLTMNTTNTLKLSTlMIAWTKAPMLSTTLMLTLL 249
Cdd:MTH00144 163 LNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKD-LGSLKPSYKTGLSIISLLL 241

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 350430917 250 SLSGLPPLTGFLPKWLIMQELIKQETTTTATTISMLSLLGLFFYLRLAYCSTITLPPNPSSKTKQWSTKSS 320
Cdd:MTH00144 242 SLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNSSI 312
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-310 1.43e-40

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 144.92  E-value: 1.43e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917   1 MAPTTKLISAlSILLGTTLTITSNHWATAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASTLVLFSSTVnaqh 80
Cdd:MTH00011   4 TFPTMFLFSS-TMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM---- 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  81 tgQWDITQLTYPPACVLLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTAMKLPPTTLLLTSSHSLNPTLLTTMSIM 160
Cdd:MTH00011  79 --MWSFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAM 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 161 SITLGGWMGLNQTQTRKIMAFSSISHLGWMMVTITYNPKLTLLAFFTYTLMTSSVFLTMNTTNTLKLSTLMIAWTKAPML 240
Cdd:MTH00011 157 SALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTT 236

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 241 STTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTATTISMLSLLGLFFYLRLAYcSTITLPPNPSS 310
Cdd:MTH00011 237 SMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS 305
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 11-302 7.72e-36

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 132.49  E-value: 7.72e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  11 LSILLGTTLTITSNHWATAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASTLVLFSSTVNAQHTgqwditqLT 90
Cdd:MTH00197   5 FIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL-------YL 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  91 YPPACVLLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTAMKLPPTTLLLTSSHslNPTLLTTMSIMSITLGGWMGL 170
Cdd:MTH00197  78 SLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGGM 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 171 NQTQTRKIMAFSSISHLGWMMVTITYNPKLTLLAFFTYTLMTSSVFLTMNTTNTLKLSTLMIAWTKAPMLSTTLMLTLLS 250
Cdd:MTH00197 156 NQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLS 235

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 350430917 251 LSGLPPLTGFLPKWLIMQELIKQETTTTATTISMLSLLGLFFYLRLAYCSTI 302
Cdd:MTH00197 236 LGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI 287
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 11-217 1.43e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 100.96  E-value: 1.43e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  11 LSILLGTTLTITSNHWATAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQATASTLVLF--------SSTVN---- 77
Cdd:COG1007  109 LFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlagi 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  78 AQHTGQWDITQLTYPPACVLLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTAMKL----PPTTLLLTSSHSLNP-- 151
Cdd:COG1007  189 AAALAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdw 268

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 350430917 152 -TLLTTMSIMSITLGGWMGLNQTQTRKIMAFSSISHLGWMMVTITYNPKL----TLLAFFTYTLMTSSVFL 217
Cdd:COG1007  269 qLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFA 339
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 1.20e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 94.33  E-value: 1.20e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  13 ILLGTTLTITSNHWATAWAGLEINTLSIIPMI-SKSHHPRAIEAATKYFLVQATASTLVLFSSTVNAQHTGQWDI----- 86
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyinl 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  87 --------TQLTYPPACVLLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTAMKLPPTTLLLtsSHSLNPTLLTTMS 158
Cdd:MTH00196  82 vlnsgqsfSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 159 IMSITLGGWMGLNQTQTRKIMAFSSISHLGWMMVTITYNP----KLTLLAFFTYTLMTSSVFLTMNTTNTLKlsTLMIAW 234
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILALNVYK--NLIIEF 237

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 350430917 235 T----KAPMLSTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTATTISMLSLLGLFFYLRL 296
Cdd:MTH00196 238 SglsrRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-192 4.45e-19

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 87.95  E-value: 4.45e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  14 LLGTTLTITSNHWATAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQATASTLVLF--------SSTVN----AQH 80
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYgmsllygaTGSLSfagiAKA 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  81 TGQWDITQLTYPPACVLLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTAMKL----PPTTLLLTSSHSLNPT---L 153
Cdd:PRK05777 193 LADGSGNSLLLLFGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqV 272

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 350430917 154 LTTMSIMSITLGGWMGLNQTQTRKIMAFSSISHLGWMMV 192
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLV 311
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 1.00e-18

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 85.06  E-value: 1.00e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917   23 SNHWATAWAGLEINTLSIIPMI-SKSHHPRAIEAATKYFLVQATASTLVLFSSTVNAQHTGQWDITQL-TYPPAC----- 95
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELsKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917   96 -----VLLTIAIAIKLGLTPFHFWFPEVLQGSSLT-TAMLLSTAMKLPPTTLLLTSS--HSLNPT---LLTTMSIMSITL 164
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  165 GGWMGLNQTQTRKIMAFSSISHLGWMMVTI----TYNPKLTLLAFFTYTLMTSSVFLTMNTTNTLKLSTLMIA-----WT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRdygglAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 350430917  236 KAPMLSTTLMLTLLSLSGLPPLTGFLPKWLIMQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 11-297 3.49e-18

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 85.00  E-value: 3.49e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917   11 LSILLGTTLTITSNHWATAWAGLEINTLSI-IPMISKSHHPRAIEAATKYFLVQATASTLVLFSSTV------------- 76
Cdd:TIGR01770 109 LFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLiygftgslnfedl 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917   77 -NAQHTGQWDITQLTYppACVLLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTAMKL----PPTTLLLTSSHSLNP 151
Cdd:TIGR01770 189 lLFLSNGMLNISLLLL--GIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIaifaVFLRLFLYILFGFSE 266

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  152 T---LLTTMSIMSITLGGWMGLNQTQTRKIMAFSSISHLGWMMVTITYNPKL----TLLAFFTYTLMTS---SVFLTMNT 221
Cdd:TIGR01770 267 AwqiFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLgafGVLSLLRS 346

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 350430917  222 TN---TLKLSTLMIAWTKAPMLSTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTATTISMLSLLGLFFYLRLA 297
Cdd:TIGR01770 347 YKdewIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 11-296 1.87e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 73.90  E-value: 1.87e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  11 LSILLGTTLTITSNHWATAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQATASTLVLFSSTVNAQHTGQWDITQL 89
Cdd:MTH00199 104 LIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGI 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  90 TYPPAC----VLLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTAMKLPPTTLLLTSSHSLNPTLLTtmSIMSITLG 165
Cdd:MTH00199 184 NSILTGdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYG 261

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 166 GWMGLNQTQTRKIMAFSSISHLGWMM--VTITYNPKL--TLLAFFTYTLMTSSVF---LTMNTTNTL--KLSTLMiawTK 236
Cdd:MTH00199 262 AIGALNQTKIKRLLAYSGIGHMGFILfgVAIGSFESIqaSLIYMIIYVIMSICSFsiiLSLKLTKGLivEVSGLS---RK 338

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 237 APMLSTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTATTISMLSLLGLFFYLRL 296
Cdd:MTH00199 339 NPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 2-210 2.99e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 73.74  E-value: 2.99e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917   2 APTTKLISALSILLGTTLTITSNHWATAWAGLEINTLSIIPMISKSHHPRAI---------EAATKYFLVQATASTLVLF 72
Cdd:MTH00198 186 GPRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLF 265

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  73 SSTVNAQHTGQ--------------WDITQLTYPPACVLLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTAMKLpp 138
Cdd:MTH00198 266 GCALYFGFTGNegmlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF-- 343

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 350430917 139 TTLLLTSSHSLNPTLLTTMSIMSITLGGWMGLNQTQTRKIMAFSSISHLGWMMVTITYNPKLTLLAFFTYTL 210
Cdd:MTH00198 344 TVYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAV 415
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 14-296 1.62e-13

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 70.95  E-value: 1.62e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  14 LLGTTLTITSNHWATAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASTLVLFSSTVNAQHTGQWDITQL---- 89
Cdd:COG0651  117 LAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLaarl 196

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  90 -TYPP-----ACVLLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTAM-KLPP-------TTLLLTSSHSLNPTLLT 155
Cdd:COG0651  197 aELDPglllaAFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtKVGVyailrvlTLLFGADPALFLGTLLL 276

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 156 TMSIMSITLGGWMGLNQTQTRKIMAFSSISHLGWMMVTITYNPKLTLLAFFTY----TLMTSSVFLT----MNTTNTLKL 227
Cdd:COG0651  277 VLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAagaiERATGTRDL 356

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 350430917 228 STLMIAWTKAPMLSTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTATTISMLSLLGLFFYLRL 296
Cdd:COG0651  357 DKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 38-192 3.06e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 61.25  E-value: 3.06e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  38 LSIIPM---ISKSHHPRAIEAATKYFLVQATASTLVLFSSTVNAQHTGQW-----DITQLTYPPA-----CVLLTIAIAI 104
Cdd:COG1008  142 LMLIPMyflIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTaqlllFLAFFIAFAV 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 105 KLGLTPFHFWFPEVLQGSSLTTAMLLSTAMK-----------LPpttLLLTSSHSLNPTLLTtMSIMSITLGGWMGLNQT 173
Cdd:COG1008  222 KVPMFPFHTWLPDAHVEAPTAGSVLLAGVLLkmggygllrfaLP---LFPEASAYFAPLLAA-LGVIGIIYGALVALAQT 297

                        170
                 ....*....|....*....
gi 350430917 174 QTRKIMAFSSISHLGWMMV 192
Cdd:COG1008  298 DLKRLIAYSSVSHMGFVLL 316
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-220 3.74e-09

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 57.75  E-value: 3.74e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  50 PRAIEAATKYFLVQATASTLVLFSST----VNAQHTGQWDITQLTYPPACVLLTIA-------IAIKLGLTPFHFWFPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYGSSllygLSGGSTQLSAIALALITSPSLGLALAlvfviagIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 119 LQGSSLTTAMLLSTAMKLPPTTL---LLTSSHSLNPT----LLTTMSIMSITLGGWMGLNQTQTRKIMAFSSISHLGWMM 191
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAGFALairLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                        170       180
                 ....*....|....*....|....*....
gi 350430917 192 VTITYNPKLTLLAFFTYTLmtssVFLTMN 220
Cdd:PRK02504 317 IGLVAGTEAGYASMVFYLL----AYLFMN 341
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-298 1.39e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 56.04  E-value: 1.39e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  33 LEINTLSIIPMISKSHHPRAIEAATKYFLVQATASTLVLFSSTVNAQHTGQWDITQLT--YPPACVLLT------IAIAI 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAgaLAENPTVVTafgfvlLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 105 KLGLTPFHFWFPEVLQG-SSLTTAMLLSTAMKLPPTTLLLTSSHSLNP---------TLLTTMSIMSITLGGWMGLNQTQ 174
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTVFGGdfrfalglgWLLAVLALLSMLVGSLAALGQDD 294

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 175 TRKIMAFSSISHLGWMMVTITYNPKLTLLA----FFTYTLMTSSVFLT----MNTTNTLKLSTLMIAWTKAPMLSTTLML 246
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLALAAgllhLLHHALMKGALFLAagaiEVTYGTRRLSELSGLGRRMPLTAAAFAV 374

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 350430917 247 TLLSLSGLPPLTGFLPKWLIMQELIKQETTTTATTISMLSLLGLFFYLRLAY 298
Cdd:PRK08375 375 ASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 38-194 2.23e-08

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 55.21  E-value: 2.23e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  38 LSIIPM---ISKSHHPRAIEAATKYFLVQATASTLVLFS----STVNAQHTGQWDITQLTYPP--------ACVLLTIAI 102
Cdd:PRK05846 142 AMLIPMyflIGVWGGKNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLLNLPlppgvqywLFLAFFIAF 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 103 AIKLGLTPFHFWFPEVLQ-----GSSLTTAMLLSTA------MKLPpttLLLTSSHSLNPtLLTTMSIMSITLGGWMGLN 171
Cdd:PRK05846 222 AVKMPMFPLHTWLPDAHVqaptaGSVLLAGILLKMGaygllrFSLP---LFPDASHEFAP-IIITLGVIAIIYGALVALA 297

                        170       180
                 ....*....|....*....|...
gi 350430917 172 QTQTRKIMAFSSISHLGWMMVTI 194
Cdd:PRK05846 298 QTDIKKLIAYSSISHMGFVTLGI 320
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-215 5.76e-08

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 53.99  E-value: 5.76e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  13 ILLGTTLTITSNHWATAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATA------STLVLFSSTVNAQHTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  87 TQLT-----YPPACVLLT-----IAIAIKLGLTPFHFWFPEV-LQGSSLTTAMLLSTAMKLPPTTLLL-------TSSHS 148
Cdd:PRK08676 191 TELAahaslLSPSVLGASflfifIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRlsallrqSGAAE 270

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 350430917 149 LNPTLLTTMSIMSITLGGWMGLNQTQTRKIMAFSSISHLGWMMVTITYNPKLTLLAFFTYTLMTSSV 215
Cdd:PRK08676 271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLV 337
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 19-213 2.46e-07

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 52.24  E-value: 2.46e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  19 LTITSNHWATAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLV------QATASTLVLFSS--------------TVNA 78
Cdd:PRK06458 123 LALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIIcsvgvaFALFGTILVYANaatvmgdgemailwTELL 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  79 QHTGQWDITQLTYppACVLLTIAIAIKLGLTPFHFWFPEV-LQGSSLTTAM----LLSTAMK--LPPTTLLLTSSHSLNP 151
Cdd:PRK06458 203 KHASLLDPTLMKL--AFVFLLIGFGTKVGLFPMHAWLPDAhSEAPSPVSALlsgvLLNVALYavLRYYILIDAAIGSDFP 280

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 350430917 152 -TLLTTMSIMSITLGGWMGLNQTQTRKIMAFSSISHLGWMMVTITYNPKLTLLAFFTYTLMTS 213
Cdd:PRK06458 281 gRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHS 343
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-194 2.96e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 51.86  E-value: 2.96e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917   50 PRAIEAATKYFLVQATASTLVLFS----STVNAQHTGQWDITQLTYPPAC-----VLLTIAIAIKLGLTPFHFWFPEV-L 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAilglYFLGGGTFDLLELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  120 QGSSLTTAMLLSTAMKLPPTTLLLTS-------SHSLNPtLLTTMSIMSITLGGWMGLNQTQTRKIMAFSSISHLGWMMV 192
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFNlplfpdaSLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310


                  ..
gi 350430917  193 TI 194
Cdd:TIGR01972 311 GI 312
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-194 3.09e-07

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 51.96  E-value: 3.09e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  55 AATKYFLVQATASTLVLFSSTVNAQHTGQ--WDITQLT---YPPACVLLT-----IAIAIKLGLTPFHFWFPEVLQGSSL 124
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGaksYPLALELLLyagflIAFGVKLPIFPLHTWLPDAHGEASA 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 350430917 125 TTAMLLS-TAMKLPPTTL------LLTSSHSLNPTLLTTMSIMSITLGGWMGLNQTQTRKIMAFSSISHLGWMMVTI 194
Cdd:PRK12561 218 PVSMILAgVLLKMGGYALirfnvqMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGI 294
ndhB CHL00049
NADH dehydrogenase subunit 2
 1-263 1.87e-06

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 49.23  E-value: 1.87e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917   1 MAPTTKLISALSILLGTTLTITSNHWATAWAGLEINTLSIIPMISKSHHP-RAIEAATKYFLVQATASTLVL--FSST-- 75
Cdd:CHL00049 108 MAITEFLLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFSWLyg 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  76 VNAQHTGQWDI------TQLTYPPAC----VLLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTAMK---LPPTTLL 142
Cdd:CHL00049 188 LSGGEIELQEIvnglinTQMYNSPGIsialIFITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKvaaSALATRI 267

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 143 LTSSHSLNPT----LLTTMSIMSITLGGWMGLNQTQTRKIMAFSSISHLGWMMV-TITYNPKLTLLAFFTYTLmtssVFL 217
Cdd:CHL00049 268 FDIPFYFSSNewhlLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIgIIVGDSNDGYASMITYML----FYI 343

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 350430917 218 TMN-------TTNTLKLSTLMI-----AWTKAPMLSTTLMLTLLSLSGLPPLTGFLPK 263
Cdd:CHL00049 344 FMNlgtfaciVLFGLRTGTDNIrdyagLYTKDPFLALSLALCLLSLGGIPPLAGFFGK 401
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 10-273 5.66e-06

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 48.07  E-value: 5.66e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  10 ALSILLGTTLTITSNHWATAWAGLEINTLS---IIPMISKshhpRAIEAATKYFLVQATASTLVLFSSTVNAQHTGQWDI 86
Cdd:PRK08668 104 ALMSLAGVLGVFLANDLLTLYIFWEIMTFSsfmMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDF 179

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  87 ----------TQLTYPPACVLLTIAIAI-KLGLTPFHFWFPE-----------VLQGS-SLTTAMLLSTAMKLPPTTLLL 143
Cdd:PRK08668 180 adisqglindTSTGFALIVFLFLLAFGVaKAGIFPLHVWAPDayseapqsfsaVLSGQlSKLGAYGFLLVLYVLPGTKLF 259

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 144 T-----SSHSLNPTLLTTMSIMSITLGGWMGLNQTQTRKIMAFSSISHLGWMMVTITYnpkLTLLAF-------FTYTLM 211
Cdd:PRK08668 260 SefgtyRGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGL---GTSLGFagglfhvFNHALF 336

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 350430917 212 TSSVFLTMNT----TNTLKLSTLMIAWTKAPMLSTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQ 273
Cdd:PRK08668 337 KGLFFLIFAAviyrTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISK 402
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 79-204 6.42e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 48.00  E-value: 6.42e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  79 QHTGQWDITQL-TYPPACVLLTIAIAI-------KLGLTPFHFWFPEVLQGSSLTTAMLLSTAM---------KLPPTTL 141
Cdd:PRK12644 182 QAAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPGFA 261

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 350430917 142 LLTSSHslnPTLLtTMSIMSITLGGWMGLNQTQTRKIMAFSSISHLGWMMVTITYNPKLTLLA 204
Cdd:PRK12644 262 DVPVWR---PTVL-VLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALA 320
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-196 1.24e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 47.13  E-value: 1.24e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  48 HHPRAIEAATKYFLVQATASTLVLFSSTVNAQHTGQWDITQLTYPPAC--------------VLLTIAIAIKLGLTPFHF 113
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghplflitlILIFIGAAAKSAQGPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 114 WFPEVLQGSSLTTAMLLSTAMKLPPTTLLLTSSHSLNPT-----LLTTMSIMSITLGGWMGLNQTQTRKIMAFSSISHLG 188
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315


                 ....*...
gi 350430917 189 WMMVTITY 196
Cdd:PRK12649 316 YLMTMYGY 323
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 48-192 1.44e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 46.68  E-value: 1.44e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  48 HHPRAIEAATKYFLV---------------QATASTLVLfsSTVNAQhtGQWDITQLTYPPACVLLTIAIAIKLGLTPFH 112
Cdd:COG1009  156 EKPSARRAARKAFLVtrvgdlglllgilllGAIAGTLNF--SELLAA--APTILSSPLLTLILLLLLLGAFGKSAQFPLH 231

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 113 FWFPEVLQGSSLTTAMLLSTAM---------KLPPttlLLtsshSLNPTLLTTMSIM-SITL--GGWMGLNQTQTRKIMA 180
Cdd:COG1009  232 FWLPDAMEGPTPVSALLHAATMvkagvyllaRLSP---LF----ALSPVWLTVVAIIgAITAlfAALIALAQTDIKRVLA 304

                        170
                 ....*....|..
gi 350430917 181 FSSISHLGWMMV 192
Cdd:COG1009  305 YSTVSQLGYMFL 316
PRK12650 PRK12650
DUF4040 family protein;
96-218 2.86e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 45.80  E-value: 2.86e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  96 VLLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTAMKLPPTTLLLTSSHSL--NPT---LLTTMSIMSITLGGWMGL 170
Cdd:PRK12650 212 VLIAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFhdVAVwnwLLIIVGMITALMGAVFAV 291

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 350430917 171 NQTQTRKIMAFSSISHLGWMMVTITYNPKLTLLAFFTYT----LMTSSVFLT 218
Cdd:PRK12650 292 QKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTlahaLFKSSLFML 343
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 4.65e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 45.09  E-value: 4.65e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  33 LEINTLSIIPMIS-KSHHPRAIEAATKYFLVQATASTLVLFSStvnAQHTGQWDITQLTYPP-------------ACVLL 98
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAYLAvkmsenptvvakiALALF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  99 TIAIAIKLGLTPFHFWFPEVLQG--SSLTTAMLLSTAMKLPPTTLLLTSSHSLNPTLLTTMSIMSI------TLGGWMGL 170
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALARVLFSIYGPAINLATVGWVIIIlgcltmFVGVAMAV 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 171 NQTQTRKIMAFSSISHLGWMM------VTITYNPKLTLLAF----------FTYTLMTSSVFLT----MNTTNTLKLSTL 230
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMLlglgvgLAALGDPAMASYGEialaggiyhiVNHALYKALLFLTagavIYETGTRNLNEL 386

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 350430917 231 MIAWTKAPMLSTTLMLTLLSLSGLPPLTGFLPKWLI 266
Cdd:PRK08376 387 GGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-204 3.37e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 42.38  E-value: 3.37e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  55 AATKYFLVQATASTLVL--FSSTVNAQHTGQWDITQL---TYPPACVLL-----TIAIAIKLGLTPFHFWFPEV-LQGSS 123
Cdd:PRK06473 158 AATKFLLYTAISGILILvsFLGLVWLSGASSFDYEPLrshTLPLSTQLLllapiLVGFGIKIPLVPFHTWLPDAhVEAST 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 124 LTTAMLLSTAMKLPPTTLL-------LTSSHSLNPTLlTTMSIMSITLGGWMGLNQTQTRKIMAFSSISHLGWMMVTITY 196
Cdd:PRK06473 238 PVSVLLAGVLLKLGTYGLLrfgvglfPEAWVYLAPWL-ATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAA 316


                 ....*...
gi 350430917 197 NPKLTLLA 204
Cdd:PRK06473 317 ATPLSILA 324
PRK12646 PRK12646
DUF4040 family protein;
91-220 9.04e-04

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 41.28  E-value: 9.04e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  91 YPPACVLLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTAMKLPPTTLLLTSSHSLNPT-----LLTTMSIMSITLG 165
Cdd:PRK12646 209 FIPMIFMFLLGAFTKSAQFPFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFRFTPLLGLSnmyiyIVTFVGLITMLFG 288

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 350430917 166 GWMGLNQTQTRKIMAFSSISHLGWMMVTI------TYNPKLTLLAFFTYTLMtSSVFLTMN 220
Cdd:PRK12646 289 SITALKQWDLKGILAYSTISQLGMIMAMVgigggyAQHQQDAIASIYVFVLF-AALFHLMN 348
ndhD CHL00011
NADH dehydrogenase subunit 4
 100-194 1.08e-03

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 40.70  E-value: 1.08e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 100 IAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTAM-KLPPTTL------LLTSSHSLNPTLLTTMSIMSITLGGWMGLNQ 172
Cdd:CHL00011 219 IAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILlKMGAYGLirinmeLLPHAHSIFSPWLVIVGAIQIIYAASTSLGQ 298

                         90       100
                 ....*....|....*....|..
gi 350430917 173 TQTRKIMAFSSISHLGWMMVTI 194
Cdd:CHL00011 299 RNLKKRIAYSSVSHMGFIIIGI 320
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-228 2.02e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 40.08  E-value: 2.02e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  55 AATKYFLVQATASTLVL--------FSSTVNAQHTgqwDITQLTYPPACVLLT-----IAIAIKLGLTPFHFWFPEVLQG 121
Cdd:PRK02546 166 AATKFILYTAGSSLFILlaalamafYGDTPTFDMT---ALAAKDFGLGFQLLCyagllIAYGVKLPIVPLHTWLPDAHGE 242

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 122 SSLTTAMLLS-TAMKLPPTTLL------LTSSHSLNPTLLTTMSIMSITLGGWMGLNQTQTRKIMAFSSISHLGWMMVTI 194
Cdd:PRK02546 243 ATAPVHMLLAgILLKMGGYALLrmnagmLPDAHAQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGI 322

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 350430917 195 TYNPKL----TLLAFFTYTLMTSSVFL----TMNTTNTLKLS 228
Cdd:PRK02546 323 GSFTDLgtsgAMLQMISHGLIGASLFFlvgaTYDRTHTLMLD 364
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 59-194 2.05e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 40.10  E-value: 2.05e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  59 YFLVQATASTLVLFSSTVNA-QHTGQWDITQLTYPPAC-----VLLTIAIAIKLGLTPFHFWFPEVLQG-----SSLTTA 127
Cdd:PRK08667 166 FYFVMTQLSTVFLMLGIIVLfIQTGSFELSPLGASAGIlslvfLLLFLGFGIKAGIIPFHKWLPYAHPAspsnvSALMSG 245

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 350430917 128 MLLSTAMKLPPTTLLLTSSHSLN-PTLLTTMSIMSITLGGWMGLNQTQTRKIMAFSSISHLGWMMVTI 194
Cdd:PRK08667 246 VMLKVAVYGLVRFLMDVLSPELWwGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGI 313
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-296 3.33e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 39.33  E-value: 3.33e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  33 LEINTLSIIPMISKSHHPRAIEAATKYFLVQATASTLVLFSSTVNAQHTGQWDITQL-----------TYPPACVLLTIA 101
Cdd:PRK12662 139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLNMGDMfliiqdlptnrAIQIGVLFIMVG 218

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 102 IAIKLGLTPFHFWFPEVLQGS-SLTTAMLLSTAMK-----------------LPPTTLLLTsshslnpTLLTTMSIMSIT 163
Cdd:PRK12662 219 LFIKAALFPFHKWLIQAYSEApSFISVFFSGTSTKvmiyliirivydvfkanFVFTTLPFN-------NVFMILAALAIV 291

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 164 LGGWMGLNQTQTRKIMAFSSISHLGWMMVTITYNPKLTLLAFFTY----TLMTSSVFLTMNTT----NTLKLSTLMIAWT 235
Cdd:PRK12662 292 FGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSIsyhfGTTKLEDCLNLWK 371

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 350430917 236 KAPMLSTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTATTISMLSLLGLFFYLRL 296
Cdd:PRK12662 372 SMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKI 432
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 100-194 4.42e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 38.75  E-value: 4.42e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 100 IAIAIKLGLTPFHFWFPEV-----LQGSSLTTAMLLSTA----MKLPPTTLLLtSSHSLNPTLLtTMSIMSITLGGWMGL 170
Cdd:MTH00226 238 LAMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILLKLGgyglVRLSWPILPL-GAQNLAPAVI-AMGIVGIVYGSFATC 315

                         90       100
                 ....*....|....*....|....
gi 350430917 171 NQTQTRKIMAFSSISHLGWMMVTI 194
Cdd:MTH00226 316 RQIDVKRLVAYSSVAHMGLVSITL 339
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
96-203 4.58e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 38.92  E-value: 4.58e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  96 VLLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTAMKLPPTTLLLTSSHSLNPTL-------LTTMSIMSITLGGWM 168
Cdd:PRK07363 209 TGLLLGFGIKIPLVPLHTWLPDAYTEASPAVAILLGGVLAKLGTYGLLRFGLQLFPQTwslvapgLAIIGTISVIYGALS 288

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 350430917 169 GLNQTQTRKIMAFSSISHLGWMMVTITYNPKLTLL 203
Cdd:PRK07363 289 AIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLL 323
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 78-206 4.85e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 38.74  E-value: 4.85e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  78 AQHTGQWDITQ--LTYPPACVLL---TIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTAMKLPpTTLLLTSSHSL--- 149
Cdd:MTH00066 188 AMNTNSWELQQifLLNDNSTLPLlglILAAAGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVA-GIFLLIRFHPLlen 266

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 150 NPTLLTT-MSIMSIT--LGGWMGLNQTQTRKIMAFSSISHLGWMMVTITYNpkLTLLAFF 206
Cdd:MTH00066 267 NQTALTIcLCLGALTtlFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLN--QPQLAFF 324
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 100-217 5.34e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 38.51  E-value: 5.34e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917 100 IAIAIKLGLTPFHFWFPEV-----LQGSSLTTAMLLstamKLPPTTLLLTS-------SHSLNPtLLTTMSIMSITLGGW 167
Cdd:MTH00204 217 LSLAVKIPQIPFHIWLPQAhveapVAGSVILAGILL----KLGGYGFLRFSwplfpaaSEYFAP-LIVMLSVIAVIYGSL 291

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 350430917 168 MGLNQTQTRKIMAFSSISHLGwmmvtitynpkLTLLAFFTYTL--MTSSVFL 217
Cdd:MTH00204 292 TTCRQVDFKRLIAYSSVAHMG-----------LVPLGLFTHTIegLVAAVFL 332
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
8-194 6.94e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 38.14  E-value: 6.94e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917   8 ISALSILLGT-TLTITSNHW---ATAWAGLEI---NTLSIIPmisksHHPRAIEAATKYFLVQATASTLVLFSSTVNAQH 80
Cdd:PRK08168 103 VRALAGVLAAvHLLVLSDHLlvlIAAWAAISLalhRLLCFYP-----DRPFARLAAHKKFIADRLAELLLLAAAALAYLE 177

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  81 TGQWDITQL-----TYPP------ACVLLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTAMKLPPTTL-----LLT 144
Cdd:PRK08168 178 VGSLSLSALwahlaAQGAspslqaAALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAGVVNLGGFVLirfapLLE 257

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 350430917 145 SSHSLNpTLLTTMSIMSITLGGWMGLNQTQTRKIMAFSSISHLGWMMVTI 194
Cdd:PRK08168 258 QAPPAR-WLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLLEC 306
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 82-217 8.51e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 37.82  E-value: 8.51e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  82 GQWDITQLTYPPACVLLTIAIAI----KLGLTPFHFWFPEVLQGSSLTTAMLLSTAMKLPPTTLL------LTSSHSLNP 151
Cdd:MTH00207 165 GHWSITNMWQTDMNNYIALSIMIaamtKSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLirfypfLSSTYWFNP 244

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 350430917 152 TLLTTMSiMSITLGGWMGLNQTQTRKIMAFSSISHLGWMMVTITYN-PKLTLLAFFTYTLMTSSVFL 217
Cdd:MTH00207 245 ALLLTAS-LTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGmPKLALFHLITHALFKALLFV 310
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 69-206 8.82e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 38.01  E-value: 8.82e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430917  69 LVLFSSTVNAQHTGQWDITQLTYPPACVLLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTAMKLPPTTLLLtsshS 148
Cdd:MTH00211 181 MVWLLLNLNSWEISQLFILNLDLTLFLLGLLLAAMGKSAQFGFHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLI----R 256

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 350430917 149 LNPTLLTTMSIMSITL---------GGWMGLNQTQTRKIMAFSSISHLGWMMVTITYNPKltLLAFF 206
Cdd:MTH00211 257 LSPLFQNNQLILGAVLllgaltmlfGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNQP--QLAFL 321
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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