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Conserved domains on  [gi|350430925|gb|AEQ28430|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Hapalopsittaca melanotis peruviana]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-344 4.99e-143

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 408.06  E-value: 4.99e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925   1 PTTKLISTMSILLGTMITITSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLVLFSSTVNAQHTG 80
Cdd:MTH00112   3 PHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  81 QWDITQLTYPPACVLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPTTLLLITSHSLNPALLTTMSIMSI 160
Cdd:MTH00112  83 QWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILST 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 161 ALGGWMGLNQTQIRKIMAFSSISHLGWMMITITYNPKLTLLAFLTYTLMTSSIFLTLHTTNTLKLSTLMTSWTKAPMLNT 240
Cdd:MTH00112 163 LIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNT 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 241 TLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKIKQWFTKNPTN 320
Cdd:MTH00112 243 TLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKN 322

                        330       340
                 ....*....|....*....|....
gi 350430925 321 PLISTLTSLSTLLLPLSPMILTIT 344
Cdd:MTH00112 323 TLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-344 4.99e-143

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 408.06  E-value: 4.99e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925   1 PTTKLISTMSILLGTMITITSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLVLFSSTVNAQHTG 80
Cdd:MTH00112   3 PHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  81 QWDITQLTYPPACVLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPTTLLLITSHSLNPALLTTMSIMSI 160
Cdd:MTH00112  83 QWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILST 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 161 ALGGWMGLNQTQIRKIMAFSSISHLGWMMITITYNPKLTLLAFLTYTLMTSSIFLTLHTTNTLKLSTLMTSWTKAPMLNT 240
Cdd:MTH00112 163 LIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNT 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 241 TLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKIKQWFTKNPTN 320
Cdd:MTH00112 243 TLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKN 322

                        330       340
                 ....*....|....*....|....
gi 350430925 321 PLISTLTSLSTLLLPLSPMILTIT 344
Cdd:MTH00112 323 TLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-296 5.67e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 99.04  E-value: 5.67e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925   8 TMSILLGTMITITSNHWAMAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQAAASTLVLF--------SSTVN--- 75
Cdd:COG1007  108 LLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlag 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  76 -AQHTGQWDITQLTYPPACVLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKL----PPTTLLLITSHSLNPA 150
Cdd:COG1007  188 iAAALAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAD 267

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 151 ---LLTTMSIMSIALGGWMGLNQTQIRKIMAFSSISHLGWMMITITYNPKL----TLLAFLTYTLMTSSIFLTL-----H 218
Cdd:COG1007  268 wqlLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVIlllsrK 347

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 350430925 219 TTNTLKLSTLMTSWTKAPMLNTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTTTIISMLSLLGLFFYLRLAY 296
Cdd:COG1007  348 GGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 21-266 4.36e-19

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 85.83  E-value: 4.36e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925   21 SNHWAMAWAGLEINTLSIIPMI-SKSHHPRAIEAATKYFLVQAAASTLVLFSSTVNAQHTGQWDITQL-TYPPAC----- 93
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELsKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925   94 -----VLLTTAIAIKLGLTPFHFWFPEVLQGSSLT-TAMLLSTVMKLPP---TTLLLITSHSLNPA--LLTTMSIMSIAL 162
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGyglIRRSLLYLPSSPFIqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  163 GGWMGLNQTQIRKIMAFSSISHLGWMMITI----TYNPKLTLLAFLTYTLMTSSIFL--------TLHTTNTLKLSTLmt 230
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsviyrRVHTRNIRDYGGL-- 238

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 350430925  231 sWTKAPMLNTTLMLTLLSLSGLPPLTGFLPKWLIMQ 266
Cdd:pfam00361 239 -AKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 11-295 2.25e-18

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 85.77  E-value: 2.25e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925   11 ILLGTMITITSNHWAMAWAGLEINTLSI-IPMISKSHHPRAIEAATKYFLVQAAASTLVLFSSTV--------------N 75
Cdd:TIGR01770 111 ALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLiygftgslnfedllL 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925   76 AQHTGQWDITQLTYppACVLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPTTLLL-------ITSHSLN 148
Cdd:TIGR01770 191 FLSNGMLNISLLLL--GIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAW 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  149 PALLTTMSIMSIALGGWMGLNQTQIRKIMAFSSISHLGWMMITITYNPKL----TLLAFLTYTLMTSSIFLTLHTTNTLK 224
Cdd:TIGR01770 269 QIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLSLLRSYK 348

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 350430925  225 ------LSTLMTSWTKAPMLNTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTTTIISMLSLLGLFFYLRLA 295
Cdd:TIGR01770 349 dewieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-344 4.99e-143

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 408.06  E-value: 4.99e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925   1 PTTKLISTMSILLGTMITITSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLVLFSSTVNAQHTG 80
Cdd:MTH00112   3 PHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  81 QWDITQLTYPPACVLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPTTLLLITSHSLNPALLTTMSIMSI 160
Cdd:MTH00112  83 QWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILST 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 161 ALGGWMGLNQTQIRKIMAFSSISHLGWMMITITYNPKLTLLAFLTYTLMTSSIFLTLHTTNTLKLSTLMTSWTKAPMLNT 240
Cdd:MTH00112 163 LIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNT 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 241 TLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKIKQWFTKNPTN 320
Cdd:MTH00112 243 TLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKN 322

                        330       340
                 ....*....|....*....|....
gi 350430925 321 PLISTLTSLSTLLLPLSPMILTIT 344
Cdd:MTH00112 323 TLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 9-322 1.21e-113

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 333.70  E-value: 1.21e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925   9 MSILLGTMITITSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLVLFSSTVNAQHTGQWDITQLT 88
Cdd:MTH00135  11 FSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMS 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  89 YPPACVLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPTTLLLITSHSlNPALLTTMSIMSIALGGWMGL 168
Cdd:MTH00135  91 HPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGWGGL 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 169 NQTQIRKIMAFSSISHLGWMMITITYNPKLTLLAFLTYTLMTSSIFLTLHTTNTLKLSTLMTSWTKAPMLNTTLMLTLLS 248
Cdd:MTH00135 170 NQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLS 249

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 350430925 249 LSGLPPLTGFLPKWLIMQELIKQETTTTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKIKQWFTKNPTNPL 322
Cdd:MTH00135 250 LGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQLTL 323
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-323 2.19e-113

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 333.04  E-value: 2.19e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925   1 PTTKLISTMSILLGTMITITSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLVLFSSTVNAQHTG 80
Cdd:MTH00070   3 PYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  81 QWDITQLTYPPACVLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPTTLLLITSHSLNPALLTTMSIMSI 160
Cdd:MTH00070  83 EWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLST 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 161 ALGGWMGLNQTQIRKIMAFSSISHLGWMMITITYNPKLTLLAFLTYTLMTSSIFLTLHTTNTLKLSTLMTSWTKAPMLNT 240
Cdd:MTH00070 163 LIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTS 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 241 TLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKIKQWFTKNPTN 320
Cdd:MTH00070 243 MMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTN 322


                 ...
gi 350430925 321 PLI 323
Cdd:MTH00070 323 NLL 325
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-323 5.66e-101

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 301.38  E-value: 5.66e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925   1 PTTKLISTMSILLGTMITITSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLVLFSSTVNAQHTG 80
Cdd:MTH00105   3 PLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  81 QWDITQLTYPPACVLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPTTLLLITSHSLNPALLTTMSIMSI 160
Cdd:MTH00105  83 QWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSI 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 161 ALGGWMGLNQTQIRKIMAFSSISHLGWMMITITYNPKLTLLAFLTYTLMTSSIFLTLHTTNTLKLSTLMTSWTKAPMLNT 240
Cdd:MTH00105 163 LIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTS 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 241 TLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTTTIISMLSLLGLFFYLRLAYCSTITL-PPNPSSKIKQWFTKNPT 319
Cdd:MTH00105 243 LILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMfPSTNNMKMKWQFENTKP 322


                 ....
gi 350430925 320 NPLI 323
Cdd:MTH00105 323 MTLL 326
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-344 4.64e-85

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 260.67  E-value: 4.64e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925   1 PTTKLISTMSILLGTMITITSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLVLFSSTVNAQHTG 80
Cdd:MTH00200   3 PLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  81 QWDITQLTYPPACVLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPTTLLLITSHSLNPALLTTMSIMSI 160
Cdd:MTH00200  83 QWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSV 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 161 ALGGWMGLNQTQIRKIMAFSSISHLGWMMITITYNPKLTLLAFLTYTLMTSSIFLTLHTTNTLKLSTLMTSWTKAPMLNT 240
Cdd:MTH00200 163 LVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSM 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 241 TLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKIKQWFTKNPTN 320
Cdd:MTH00200 243 LLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSN 322

                        330       340
                 ....*....|....*....|....
gi 350430925 321 PLISTLTSLSTLLLPLSPMILTIT 344
Cdd:MTH00200 323 LLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 10-323 1.90e-75

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 235.98  E-value: 1.90e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  10 SILLGTMITITSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLVLFSSTVNAQHTGQWDITQLTY 89
Cdd:MTH00041  12 SIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLN 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  90 PPACVLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPTTLLLITSHSLNPALLTTMSIMSIALGGWMGLN 169
Cdd:MTH00041  92 TLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLN 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 170 QTQIRKIMAFSSISHLGWMMITITYNPKLTLLAFLTYTLMTSSIFLTLHTTNTLKLSTLMTSWTKAPMLNTTLMLTLLSL 249
Cdd:MTH00041 172 QTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSL 251

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 350430925 250 SGLPPLTGFLPKWLIMQELIKQETTTTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKIKQWFTKNPTNPLI 323
Cdd:MTH00041 252 GGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYG 325
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 3-311 3.49e-51

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 173.09  E-value: 3.49e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925   3 TKLISTMSILLGTMITITSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLVLFSSTVNAQhtgqw 82
Cdd:MTH00160   6 SKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML----- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  83 dITQLTYPPACVLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPTTLLlitSHSLNPALLTTMSIMSIAL 162
Cdd:MTH00160  81 -NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIILSAII 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 163 GGWMGLNQTQIRKIMAFSSISHLGWMMITITYNPKLTLLAFLTYTLMTSSIFLTLHTTNTLKLSTLMTSWTKAPMLNTTL 242
Cdd:MTH00160 157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 350430925 243 MLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKIK 311
Cdd:MTH00160 237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLK 305
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 4-313 7.84e-42

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 148.11  E-value: 7.84e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925   4 KLISTMSILLGTMITITSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLVLFSSTVNAQHTGQWD 83
Cdd:MTH00144   6 NLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWF 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  84 ITqltyppacVLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPttLLLITSHSLNPALLTT---MSIMSI 160
Cdd:MTH00144  86 SM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAP--LFLLSNFLDLYWLAYLlcvISVLSA 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 161 ALGGWMGLNQTQIRKIMAFSSISHLGWMMITITYNPKLTLLAFLTYTLMTSSIFLTLHTTNTLKLSTlMTSWTKAPMLNT 240
Cdd:MTH00144 156 LVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKD-LGSLKPSYKTGL 234

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 350430925 241 TLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKIKQW 313
Cdd:MTH00144 235 SIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKV 307
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-308 8.60e-41

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 145.69  E-value: 8.60e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925   1 PTTKLISTMSILlGTMITITSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLVLFSSTVnaqhtg 80
Cdd:MTH00011   6 PTMFLFSSTMTL-GTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------ 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  81 QWDITQLTYPPACVLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPTTLLLITSHSLNPALLTTMSIMSI 160
Cdd:MTH00011  79 MWSFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSA 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 161 ALGGWMGLNQTQIRKIMAFSSISHLGWMMITITYNPKLTLLAFLTYTLMTSSIFLTLHTTNTLKLSTLMTSWTKAPMLNT 240
Cdd:MTH00011 159 LAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSM 238

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 350430925 241 TLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTTTIISMLSLLGLFFYLRLAYcSTITLPPNPSS 308
Cdd:MTH00011 239 SLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS 305
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 10-300 1.79e-36

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 134.03  E-value: 1.79e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  10 SILLGTMITITSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLVLFSSTVNAQHTgqwditqLTY 89
Cdd:MTH00197   6 IIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL-------YLS 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  90 PPACVLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPttLLLITSHSLNPALLTTMSIMSIALGGWMGLN 169
Cdd:MTH00197  79 LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAP--LLILAFNSSSFMGLLICSVLSSLIGGIGGMN 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 170 QTQIRKIMAFSSISHLGWMMITITYNPKLTLLAFLTYTLMTSSIFLTLHTTNTLKLSTLMTSWTKAPMLNTTLMLTLLSL 249
Cdd:MTH00197 157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSL 236

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 350430925 250 SGLPPLTGFLPKWLIMQELIKQETTTTTTIISMLSLLGLFFYLRLAYCSTI 300
Cdd:MTH00197 237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI 287
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-296 5.67e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 99.04  E-value: 5.67e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925   8 TMSILLGTMITITSNHWAMAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQAAASTLVLF--------SSTVN--- 75
Cdd:COG1007  108 LLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlag 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  76 -AQHTGQWDITQLTYPPACVLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKL----PPTTLLLITSHSLNPA 150
Cdd:COG1007  188 iAAALAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAD 267

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 151 ---LLTTMSIMSIALGGWMGLNQTQIRKIMAFSSISHLGWMMITITYNPKL----TLLAFLTYTLMTSSIFLTL-----H 218
Cdd:COG1007  268 wqlLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVIlllsrK 347

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 350430925 219 TTNTLKLSTLMTSWTKAPMLNTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTTTIISMLSLLGLFFYLRLAY 296
Cdd:COG1007  348 GGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 11-294 1.74e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 96.64  E-value: 1.74e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  11 ILLGTMITITSNHWAMAWAGLEINTLSIIPMI-SKSHHPRAIEAATKYFLVQAAASTLVLFSSTVNAQHTGQWDI----- 84
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyinl 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  85 --------TQLTYPPACVLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLppTTLLLITSHSLNPALLTTMS 156
Cdd:MTH00196  82 vlnsgqsfSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKL--GIFSILVSIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 157 IMSIALGGWMGLNQTQIRKIMAFSSISHLGWMMITITYNPKLTLLAFLTY----TLMTSSIFLTLHTTNTLK--LSTLMT 230
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFESIQASLVYlfiyIIMSICVFSIILALNVYKnlIIEFSG 239

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 350430925 231 SWTKAPMLNTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTTTIISMLSLLGLFFYLRL 294
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
12-190 3.66e-20

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 91.04  E-value: 3.66e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  12 LLGTMITITSNHWAMAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQAAASTLVLF--------SSTVN----AQH 78
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYgmsllygaTGSLSfagiAKA 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  79 TGQWDITQLTYPPACVLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKL----PPTTLLLITSHSLNPA---L 151
Cdd:PRK05777 193 LADGSGNSLLLLFGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqV 272

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 350430925 152 LTTMSIMSIALGGWMGLNQTQIRKIMAFSSISHLGWMMI 190
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLV 311
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 21-266 4.36e-19

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 85.83  E-value: 4.36e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925   21 SNHWAMAWAGLEINTLSIIPMI-SKSHHPRAIEAATKYFLVQAAASTLVLFSSTVNAQHTGQWDITQL-TYPPAC----- 93
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELsKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925   94 -----VLLTTAIAIKLGLTPFHFWFPEVLQGSSLT-TAMLLSTVMKLPP---TTLLLITSHSLNPA--LLTTMSIMSIAL 162
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGyglIRRSLLYLPSSPFIqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  163 GGWMGLNQTQIRKIMAFSSISHLGWMMITI----TYNPKLTLLAFLTYTLMTSSIFL--------TLHTTNTLKLSTLmt 230
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsviyrRVHTRNIRDYGGL-- 238

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 350430925  231 sWTKAPMLNTTLMLTLLSLSGLPPLTGFLPKWLIMQ 266
Cdd:pfam00361 239 -AKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 11-295 2.25e-18

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 85.77  E-value: 2.25e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925   11 ILLGTMITITSNHWAMAWAGLEINTLSI-IPMISKSHHPRAIEAATKYFLVQAAASTLVLFSSTV--------------N 75
Cdd:TIGR01770 111 ALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLiygftgslnfedllL 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925   76 AQHTGQWDITQLTYppACVLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPTTLLL-------ITSHSLN 148
Cdd:TIGR01770 191 FLSNGMLNISLLLL--GIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAW 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  149 PALLTTMSIMSIALGGWMGLNQTQIRKIMAFSSISHLGWMMITITYNPKL----TLLAFLTYTLMTSSIFLTLHTTNTLK 224
Cdd:TIGR01770 269 QIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLSLLRSYK 348

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 350430925  225 ------LSTLMTSWTKAPMLNTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTTTIISMLSLLGLFFYLRLA 295
Cdd:TIGR01770 349 dewieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 11-294 4.58e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 78.91  E-value: 4.58e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  11 ILLGTMITITSNHWAMAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQAAASTLVLFSSTVNAQHTGQWDITQLTY 89
Cdd:MTH00199 106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINS 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  90 PPAC----VLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPTTLLLITSHSLNPALLTtmSIMSIALGGW 165
Cdd:MTH00199 186 ILTGdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAI 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 166 MGLNQTQIRKIMAFSSISHLGWMMITITYNP----KLTLLAFLTYTLMTS---SIFLTLHTTNTLKLSTLMTSwTKAPML 238
Cdd:MTH00199 264 GALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSIcsfSIILSLKLTKGLIVEVSGLS-RKNPVI 342

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 350430925 239 NTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTTTIISMLSLLGLFFYLRL 294
Cdd:MTH00199 343 ALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 12-294 7.23e-16

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 77.88  E-value: 7.23e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  12 LLGTMITITSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLVLFSSTVNAQHTGQWDITQL---- 87
Cdd:COG0651  117 LAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLaarl 196

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  88 -TYPP-----ACVLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVM-KLPP----TTLLLITSHSLNPA---LLT 153
Cdd:COG0651  197 aELDPglllaAFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtKVGVyailRVLTLLFGADPALFlgtLLL 276

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 154 TMSIMSIALGGWMGLNQTQIRKIMAFSSISHLGWMMITITYNPKLTLLAFLTY----TLMTSSIFLT----LHTTNTLKL 225
Cdd:COG0651  277 VLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAagaiERATGTRDL 356

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 350430925 226 STLMTSWTKAPMLNTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTTTIISMLSLLGLFFYLRL 294
Cdd:COG0651  357 DKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 13-294 8.87e-13

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 69.12  E-value: 8.87e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  13 LGTMITITSNHWAMAWAGLEINTLSIIPMISKSHHPRAI---------EAATKYFLVQAAASTLVLFSSTVNAQHTGQ-- 81
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  82 ------------WDITQLTYPPACVLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLppTTLLLITSHSLNP 149
Cdd:MTH00198 279 mlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 150 ALLTTMSIMSIALGGWMGLNQTQIRKIMAFSSISHLGWMMITITYNPKLTL-------LAFLTYTLMTSSIFLTLHTTNT 222
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLqaswtyaVTYLVSALASFTVICTLEEFGT 436

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 223 L------------------KLSTLMTSWTKAPMLNTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTTTIISMLS 284
Cdd:MTH00198 437 RtptsrqrdgsfgnynlvrRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIYYLVA 516

                        330
                 ....*....|....*..
gi 350430925 285 LLGL-------FFYLRL 294
Cdd:MTH00198 517 LFAIictcisaFYYIRI 533
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 36-190 5.93e-12

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 66.26  E-value: 5.93e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  36 LSIIPM---ISKSHHPRAIEAATKYFLVQAAASTLVLFSSTVNAQHTGQW-----DITQLTYPPA-----CVLLTTAIAI 102
Cdd:COG1008  142 LMLIPMyflIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTaqlllFLAFFIAFAV 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 103 KLGLTPFHFWFPEVLQGSSLTTAMLLSTVMK-----------LPpttLLLITSHSLNPALLTtMSIMSIALGGWMGLNQT 171
Cdd:COG1008  222 KVPMFPFHTWLPDAHVEAPTAGSVLLAGVLLkmggygllrfaLP---LFPEASAYFAPLLAA-LGVIGIIYGALVALAQT 297

                        170
                 ....*....|....*....
gi 350430925 172 QIRKIMAFSSISHLGWMMI 190
Cdd:COG1008  298 DLKRLIAYSSVSHMGFVLL 316
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 31-296 1.55e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 61.82  E-value: 1.55e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  31 LEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLVLFSSTVNAQHTGQWDITQLT--YPPACVLLT------TAIAI 102
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAgaLAENPTVVTafgfvlLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 103 KLGLTPFHFWFPEVLQG-SSLTTAMLLSTVMKLPPTTLLLITSH----------SLNPALLTTMsIMSIALGGWMGLNQT 171
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTvfggdfrfalGLGWLLAVLA-LLSMLVGSLAALGQD 293

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 172 QIRKIMAFSSISHLGWMMITITYNPKLTLLAFLTYT----LMTSSIFLTL----HTTNTLKLSTLMTSWTKAPMLNTTLM 243
Cdd:PRK08375 294 DVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhaLMKGALFLAAgaieVTYGTRRLSELSGLGRRMPLTAAAFA 373

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 350430925 244 LTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTTTIISMLSLLGLFFYLRLAY 296
Cdd:PRK08375 374 VASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
ndhB CHL00049
NADH dehydrogenase subunit 2
 49-219 1.71e-10

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 61.94  E-value: 1.71e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  49 RAIEAATKYFLVQAAASTLVL--FSST--VNAQHTGQWDI------TQLTYPPAC----VLLTTAIAIKLGLTPFHFWFP 114
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVygFSWLygLSGGEIELQEIvnglinTQMYNSPGIsialIFITVGIGFKLSLAPFHQWTP 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 115 EVLQGSSLTTAMLLSTVMKLPPTTLLLITSHSLNPA-------LLTTMSIMSIALGGWMGLNQTQIRKIMAFSSISHLGW 187
Cdd:CHL00049 239 DVYEGSPTPVVAFLSVTSKVAASALATRIFDIPFYFssnewhlLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318

                        170       180       190
                 ....*....|....*....|....*....|...
gi 350430925 188 MMI-TITYNPKLTLLAFLTYTLMtsSIFLTLHT 219
Cdd:CHL00049 319 VIIgIIVGDSNDGYASMITYMLF--YIFMNLGT 349
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
13-190 4.10e-10

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 60.84  E-value: 4.10e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  13 LGTMITITSNHWAMAWAGLEinTLSIIPMISKSH---HPRAIEAATKYFLVQAAASTLVLFSST----VNAQHTGQWDIT 85
Cdd:PRK02504 121 LGGMFLSGATELVMIFISLE--TLSIASYLLTGYmkrDPRSNEAALKYLLIGAASSAIFLYGSSllygLSGGSTQLSAIA 198

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  86 Q-LTYPP------ACVLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPTTL---LLITSHSLNP----AL 151
Cdd:PRK02504 199 LaLITSPslglalALVFVIAGIAFKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAGFALairLLVTAFPSFDeqwkLL 278

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 350430925 152 LTTMSIMSIALGGWMGLNQTQIRKIMAFSSISHLGWMMI 190
Cdd:PRK02504 279 FTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMI 317
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 10-211 6.60e-09

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 56.86  E-value: 6.60e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  10 SILLGTM-ITITSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLVLFSS---------------- 72
Cdd:PRK06458 115 QLFLFTMlLALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvmgdgem 194

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  73 ----TVNAQHTGQWDITQLTYppACVLLTTAIAIKLGLTPFHFWFPEV-LQGSSLTTAMlLSTVmkLPPTTLL------L 141
Cdd:PRK06458 195 ailwTELLKHASLLDPTLMKL--AFVFLLIGFGTKVGLFPMHAWLPDAhSEAPSPVSAL-LSGV--LLNVALYavlryyI 269

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 350430925 142 ITSHSLNPA----LLTTMSIMSIALGGWMGLNQTQIRKIMAFSSISHLGWMMITITYNPKLTLLAFLTYTLMTS 211
Cdd:PRK06458 270 LIDAAIGSDfpgrLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHS 343
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 11-217 8.32e-09

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 56.69  E-value: 8.32e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  11 ILLGTMITITSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAA------STLVLFSSTVNAQHTGQWDI 84
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  85 TQLT-----YPPACVLLT-----TAIAIKLGLTPFHFWFPEV-LQGSSLTTAMLLSTVMKLPPTTLLLITS-------HS 146
Cdd:PRK08676 191 TELAahaslLSPSVLGASflfifIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 350430925 147 LNPALLTTMSIMSIALGGWMGLNQTQIRKIMAFSSISHLGWMMITITYNPKLTLLAFLTYTLMTSSIFLTL 217
Cdd:PRK08676 271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGL 341
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 36-192 9.76e-09

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 56.36  E-value: 9.76e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  36 LSIIPM---ISKSHHPRAIEAATKYFLVQAAASTLVLFS----STVNAQHTGQWDITQLTYPPACVLLTT--------AI 100
Cdd:PRK05846 142 AMLIPMyflIGVWGGKNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLLNLPLPPGVQYwlflaffiAF 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 101 AIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVM-KLPPTTLLLI-------TSHSLNPaLLTTMSIMSIALGGWMGLNQTQ 172
Cdd:PRK05846 222 AVKMPMFPLHTWLPDAHVQAPTAGSVLLAGILlKMGAYGLLRFslplfpdASHEFAP-IIITLGVIAIIYGALVALAQTD 300

                        170       180
                 ....*....|....*....|
gi 350430925 173 IRKIMAFSSISHLGWMMITI 192
Cdd:PRK05846 301 IKKLIAYSSISHMGFVTLGI 320
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 48-192 5.10e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 54.18  E-value: 5.10e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925   48 PRAIEAATKYFLVQAAASTLVLFSSTVNA-QHTGQWDITQLTYPPACVLLTT--------AIAIKLGLTPFHFWFPEV-L 117
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYfLGGGTFDLLELLNLPLPFGVQTwlflaffiAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  118 QGSSLTTAMLLSTVMKLPPTTLLLI-------TSHSLNPaLLTTMSIMSIALGGWMGLNQTQIRKIMAFSSISHLGWMMI 190
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFnlplfpdASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310


                  ..
gi 350430925  191 TI 192
Cdd:TIGR01972 311 GI 312
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 53-192 1.57e-07

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 52.73  E-value: 1.57e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  53 AATKYFLVQAAASTLVLFSSTVNAQHTGQ--WDITQLT---YPPACVLLT-----TAIAIKLGLTPFHFWFPEVLQGSSL 122
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGaksYPLALELLLyagflIAFGVKLPIFPLHTWLPDAHGEASA 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 350430925 123 TTAMLLSTVM-KLPPTTL------LLITSHSLNPALLTTMSIMSIALGGWMGLNQTQIRKIMAFSSISHLGWMMITI 192
Cdd:PRK12561 218 PVSMILAGVLlKMGGYALirfnvqMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGI 294
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 31-264 8.24e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 50.48  E-value: 8.24e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  31 LEINTLSIIPMIS-KSHHPRAIEAATKYFLVQAAASTLVLFSStvnAQHTGQWDITQLTYPP-------------ACVLL 96
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAYLAvkmsenptvvakiALALF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  97 TTAIAIKLGLTPFHFWFPEVLQG--SSLTTAMLLSTVMKLPPTTLLLITSHSLNPALLTTMSIMSI------ALGGWMGL 168
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALARVLFSIYGPAINLATVGWVIIIlgcltmFVGVAMAV 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 169 NQTQIRKIMAFSSISHLGWMM------ITITYNPKLTLLAFLT----------YTLMTSSIFLT----LHTTNTLKLSTL 228
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMLlglgvgLAALGDPAMASYGEIAlaggiyhivnHALYKALLFLTagavIYETGTRNLNEL 386

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 350430925 229 MTSWTKAPMLNTTLMLTLLSLSGLPPLTGFLPKWLI 264
Cdd:PRK08376 387 GGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK12650 PRK12650
DUF4040 family protein;
94-236 9.79e-07

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 50.43  E-value: 9.79e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  94 VLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPTTLLLITS--HSLNPA---LLTTMSIMSIALGGWMGL 168
Cdd:PRK12650 212 VLIAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSpvFHDVAVwnwLLIIVGMITALMGAVFAV 291

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 350430925 169 NQTQIRKIMAFSSISHLGWMMITITYNPKLTLLAFLTYT----LMTSSIFLTL----HTTNTLKLSTLMTSWTKAP 236
Cdd:PRK12650 292 QKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTlahaLFKSSLFMLIgvvdHQAGTRDIRRLGSLWRRMP 367
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 32-271 1.84e-06

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 49.61  E-value: 1.84e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  32 EINTLS---IIPMISKshhpRAIEAATKYFLVQAAASTLVLFSSTVNAQHTGQWDI----------TQLTYPPACVLLTT 98
Cdd:PRK08668 128 EIMTFSsfmMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFadisqglindTSTGFALIVFLFLL 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  99 AIAI-KLGLTPFHFWFPE-----------VLQGS-SLTTAMLLSTVMKLPPTTLLLIT-----SHSLNPALLTTMSIMSI 160
Cdd:PRK08668 204 AFGVaKAGIFPLHVWAPDayseapqsfsaVLSGQlSKLGAYGFLLVLYVLPGTKLFSEfgtyrGVPLFNYILAWLGNISI 283

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 161 ALGGWMGLNQTQIRKIMAFSSISHLGWMMITITYnpkLTLLAF-------LTYTLMTSSIFLT----LHTTNTLKLSTLM 229
Cdd:PRK08668 284 IVGTLMAILQEDIKKLIAYSSVANGGYILVGLGL---GTSLGFagglfhvFNHALFKGLFFLIfaavIYRTGTTKISEMG 360

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 350430925 230 TSWTKAPMLNTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQ 271
Cdd:PRK08668 361 GLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISK 402
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 46-194 1.81e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 46.36  E-value: 1.81e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  46 HHPRAIEAATKYFLVQAAASTLVLFSSTVNAQHTGQWDITQLTYPPACV--------LLTTAIAIKLGLT------PFHF 111
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELIenikghplFLITLILIFIGAAaksaqgPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 112 WFPEVLQGSSLTTAMLLSTVMkLPPTTLLLITSH---SLNPA---LLTTMSIMSIALGGWMGLNQTQIRKIMAFSSISHL 185
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATM-VKAGVYLVARIHpifSGTEAwfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314


                 ....*....
gi 350430925 186 GWMMITITY 194
Cdd:PRK12649 315 AYLMTMYGY 323
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 46-190 4.09e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 45.14  E-value: 4.09e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  46 HHPRAIEAATKYFLVQAA------ASTLVLFS-------STVNAQhtGQWDITQLTYPPACVLLTTAIAIKLGLTPFHFW 112
Cdd:COG1009  156 EKPSARRAARKAFLVTRVgdlgllLGILLLGAiagtlnfSELLAA--APTILSSPLLTLILLLLLLGAFGKSAQFPLHFW 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 113 FPEVLQG----SSL----T--TA-----MLLSTVMKLPPTTLLLItshslnpallTTMSIMSIALGGWMGLNQTQIRKIM 177
Cdd:COG1009  234 LPDAMEGptpvSALlhaaTmvKAgvyllARLSPLFALSPVWLTVV----------AIIGAITALFAALIALAQTDIKRVL 303

                        170
                 ....*....|...
gi 350430925 178 AFSSISHLGWMMI 190
Cdd:COG1009  304 AYSTVSQLGYMFL 316
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 57-192 1.55e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 43.57  E-value: 1.55e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  57 YFLVQAAASTLVLFSSTVNA-QHTGQWDITQLTYPPAC-----VLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLST 130
Cdd:PRK08667 166 FYFVMTQLSTVFLMLGIIVLfIQTGSFELSPLGASAGIlslvfLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSG 245

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 350430925 131 VM-KLPPTTLLLITSHSLNP-----ALLTTMSIMSIALGGWMGLNQTQIRKIMAFSSISHLGWMMITI 192
Cdd:PRK08667 246 VMlKVAVYGLVRFLMDVLSPelwwgVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGI 313
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 31-294 2.72e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 42.41  E-value: 2.72e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  31 LEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLVLFSSTVNAQHTGQWDITQL-----------TYPPACVLLTTA 99
Cdd:PRK12662 139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLNMGDMfliiqdlptnrAIQIGVLFIMVG 218

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 100 IAIKLGLTPFHFW----------FPEVLQGSSLTTAM--LLSTVMKLPPTTLLLITSHSLNPALLTtMSIMSIALGGWMG 167
Cdd:PRK12662 219 LFIKAALFPFHKWliqayseapsFISVFFSGTSTKVMiyLIIRIVYDVFKANFVFTTLPFNNVFMI-LAALAIVFGSVLA 297

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 168 LNQTQIRKIMAFSSISHLGWMMITITYNPKLTLLAFLTY----TLMTSSIFLTL----HTTNTLKLSTLMTSWTKAPMLN 239
Cdd:PRK12662 298 ILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSgsisYHFGTTKLEDCLNLWKSMPKIT 377

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 350430925 240 TTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTTTIISMLSLLGLFFYLRL 294
Cdd:PRK12662 378 LAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKI 432
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 99-217 4.79e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 41.83  E-value: 4.79e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  99 AIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTV-MKLPPTTLLLIT-------SHSLNPALLtTMSIMSIALGGWMGLNQ 170
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGIlLKLGGYGLVRLSwpilplgAQNLAPAVI-AMGIVGIVYGSFATCRQ 317

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 350430925 171 TQIRKIMAFSSISHLGWMMITITYNPKLTLlafltytlmTSSIFLTL 217
Cdd:MTH00226 318 IDVKRLVAYSSVAHMGLVSITLVTHDIIGL---------TGSIFIML 355
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
94-202 5.56e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 41.61  E-value: 5.56e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  94 VLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVM-KLPPTTLL------LITSHSLNPALLTTMSIMSIALGGWM 166
Cdd:PRK06473 209 APILVGFGIKIPLVPFHTWLPDAHVEASTPVSVLLAGVLlKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASC 288

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 350430925 167 GLNQTQIRKIMAFSSISHLGWMMITITYNPKLTLLA 202
Cdd:PRK06473 289 AIAQKDMKKMVAYSSIGHMGYILLAAAAATPLSILA 324
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
8-192 6.72e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 41.22  E-value: 6.72e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925   8 TMSILLGTMITITSNHWAM---AWAGLEI---NTLSIIPmisksHHPRAIEAATKYFLVQAAASTLVLFSSTVNAQHTGQ 81
Cdd:PRK08168 106 LAGVLAAVHLLVLSDHLLVliaAWAAISLalhRLLCFYP-----DRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGS 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  82 WDITQL-----TYPP------ACVLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPTTLL----LITSHS 146
Cdd:PRK08168 181 LSLSALwahlaAQGAspslqaAALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAGVVNLGGFVLIrfapLLEQAP 260

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 350430925 147 LNPALLTTMSIMSIALGGWMGLNQTQIRKIMAFSSISHLGWMMITI 192
Cdd:PRK08168 261 PARWLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLLEC 306
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 77-261 7.27e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 41.45  E-value: 7.27e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  77 QHTGQWDITQL-TYPPACVLLTTAIAI-------KLGLTPFHFWFPEVLQGSSLTTAMLLSTVM---------KLPPTtl 139
Cdd:PRK12644 182 QAAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG-- 259

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 140 lLITSHSLNPALLTtMSIMSIALGGWMGLNQTQIRKIMAFSSISHLGWMMITITYNPKLTLLAFLTYT----LMTSSIFL 215
Cdd:PRK12644 260 -FADVPVWRPTVLV-LGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLAMLlahaLFKAALFL 337

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 350430925 216 TL----HTTNTLKLSTLMTSWTKAPMLNTTLMLTLLSLSGLPPLTGFLPK 261
Cdd:PRK12644 338 VVgiidHSTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 53-226 1.94e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 40.08  E-value: 1.94e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  53 AATKYFLVQAAASTLVL--------FSSTVNAQHTgqwDITQLTYPPACVLLT-----TAIAIKLGLTPFHFWFPEVLQG 119
Cdd:PRK02546 166 AATKFILYTAGSSLFILlaalamafYGDTPTFDMT---ALAAKDFGLGFQLLCyagllIAYGVKLPIVPLHTWLPDAHGE 242

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 120 SSLTTAMLLSTVM-KLPPTTLL------LITSHSLNPALLTTMSIMSIALGGWMGLNQTQIRKIMAFSSISHLGWMMITI 192
Cdd:PRK02546 243 ATAPVHMLLAGILlKMGGYALLrmnagmLPDAHAQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGI 322

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 350430925 193 TYNPKL----TLLAFLTYTLMTSSIFL----TLHTTNTLKLS 226
Cdd:PRK02546 323 GSFTDLgtsgAMLQMISHGLIGASLFFlvgaTYDRTHTLMLD 364
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
94-201 2.59e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 39.70  E-value: 2.59e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  94 VLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVM-KLPPTTLLLI-------TSHSLNPALLTTMSImSIALGGW 165
Cdd:PRK07363 209 TGLLLGFGIKIPLVPLHTWLPDAYTEASPAVAILLGGVLaKLGTYGLLRFglqlfpqTWSLVAPGLAIIGTI-SVIYGAL 287

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 350430925 166 MGLNQTQIRKIMAFSSISHLGWMMITITYNPKLTLL 201
Cdd:PRK07363 288 SAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLL 323
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 31-269 2.97e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 39.16  E-value: 2.97e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  31 LEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLVLFSSTVNAQHTGQWDITQLTY--PPACVLLTTAIAIKLGLTP 108
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 109 FHFWFPEVLQGSSLTTAMLLS-TVMK---LPPTTLLLITSHSLNPalLTTMSIMSIALGGWMGLNQTQIRKIMAFSSISH 184
Cdd:PRK07234 203 SGLWLPLTHSEAEPPVSALLSgVVVKagvFPLVRCALDVPGLDLI--VRIFGVGTALLGVLFALLEKDLKRMLAFSTISQ 280

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 185 LGWMMITitynPKLTLLAFLTYTLMTSSIFL---TLHTTNTLKL-STLMTSWTKAPMLNTTLMLTLLSlsglpPLTGFLP 260
Cdd:PRK07234 281 LGFILAA----PLVGGLYALAHGLVKSTLFLcagALPSRNFTELiSQMLGIGKWIPLTMASFSIAGFP-----LLAGFVS 351


                 ....*....
gi 350430925 261 KWLIMQELI 269
Cdd:PRK07234 352 KVLTLKNLL 360
ndhD CHL00011
NADH dehydrogenase subunit 4
 99-192 3.11e-03

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 39.16  E-value: 3.11e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  99 AIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVM-KLPPTTL------LLITSHSLNPALLTTMSIMSIALGGWMGLNQT 171
Cdd:CHL00011 220 AYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILlKMGAYGLirinmeLLPHAHSIFSPWLVIVGAIQIIYAASTSLGQR 299

                         90       100
                 ....*....|....*....|.
gi 350430925 172 QIRKIMAFSSISHLGWMMITI 192
Cdd:CHL00011 300 NLKKRIAYSSVSHMGFIIIGI 320
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 76-204 4.72e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 38.74  E-value: 4.72e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925  76 AQHTGQWDITQ--LTYPPACVLL---TTAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPpTTLLLITSHSL--- 147
Cdd:MTH00066 188 AMNTNSWELQQifLLNDNSTLPLlglILAAAGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVA-GIFLLIRFHPLlen 266

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430925 148 NPALLTT---MSIMSIALGGWMGLNQTQIRKIMAFSSISHLGWMMITITYNpkLTLLAFL 204
Cdd:MTH00066 267 NQTALTIclcLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLN--QPQLAFF 324
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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