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Conserved domains on  [gi|350430964|gb|AEQ28448|]
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cytochrome b, partial (mitochondrion) [Hapalopsittaca melanotis]

Protein Classification

cytochrome b family protein( domain architecture ID 581032)

cytochrome b family protein such as formate dehydrogenase subunit gamma or cytochrome b, a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.

Gene Ontology:  GO:0046872|GO:0016491

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cytochrome_b_N super family cl23723
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-274 0e+00

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


The actual alignment was detected with superfamily member MTH00119:

Pssm-ID: 474033 [Multi-domain]  Cd Length: 380  Bit Score: 570.30  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964   1 MAPNLRKSHPLLKMANNALIDLPTPPNISTWWNFGSLLGVCLVTQILTGLLLAAHYTADTSLAFSSVAHTCRNVQYGWLI 80
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964  81 HNLHANGASLFFMCIYLHIARGFYYGSYLYKETWNTGVTLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQT 160
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964 161 LVEWAWGGFSVDNPTLTRFFTLHFLLPFMITGLALTHLTFLHETGSNNPLGISSNCDKIPFHPYFSLKDLLGFTIMLPLL 240
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                        250       260       270
                 ....*....|....*....|....*....|....
gi 350430964 241 TTLALFSPNLLGDPENFTPANPLVTPPHIKPDWY 274
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWY 274
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-274 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 570.30  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964   1 MAPNLRKSHPLLKMANNALIDLPTPPNISTWWNFGSLLGVCLVTQILTGLLLAAHYTADTSLAFSSVAHTCRNVQYGWLI 80
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964  81 HNLHANGASLFFMCIYLHIARGFYYGSYLYKETWNTGVTLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQT 160
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964 161 LVEWAWGGFSVDNPTLTRFFTLHFLLPFMITGLALTHLTFLHETGSNNPLGISSNCDKIPFHPYFSLKDLLGFTIMLPLL 240
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                        250       260       270
                 ....*....|....*....|....*....|....
gi 350430964 241 TTLALFSPNLLGDPENFTPANPLVTPPHIKPDWY 274
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWY 274
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
17-274 2.54e-101

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 300.94  E-value: 2.54e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964  17 NALIDLPTPPNISTWWNFGSLLGVCLVTQILTGLLLAAHYTADTSLAFSSVAHTCRNVQYGWLIHNLHANGASLFFMCIY 96
Cdd:COG1290   25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964  97 LHIARGFYYGSYlyKE----TWNTGVTLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVD 172
Cdd:COG1290  105 LHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPG 182

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964 173 NPTLTRFFTLH-FLLPFMITGLALTHLTFLHETGSNNPLGI----SSNCDKIPFHPYFSLKDLLGFTIMLPLLTTLALFS 247
Cdd:COG1290  183 DATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFF 262

                        250       260
                 ....*....|....*....|....*..
gi 350430964 248 PNllGDPENFTPANPLVTPPHIKPDWY 274
Cdd:COG1290  263 PI--NPPPNYGPANPLATPAHIQPDWY 287
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 1.69e-95

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 279.25  E-value: 1.69e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964  10 PLLKMANNALIDLPTPPNISTWWNFGSLLGVCLVTQILTGLLLAAHYTADTSLAFSSVAHTCRNVQYGWLIHNLHANGAS 89
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964  90 LFFMCIYLHIARGFYYGSY--LYKETWNTGVTLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWG 167
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 350430964 168 GFSVDNPTLTRFFTLHFLLPFMITGLALTHLTFLHETGSN 207
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 2.42e-83

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 248.07  E-value: 2.42e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964   19 LIDLPTPPNISTWWNFGSLLGVCLVTQILTGLLLAAHYTADTSLAFSSVAHTCRNVQYGWLIHNLHANGASLFFMCIYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964   99 IARGFYYG--SYLYKETWNTGVTLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTL 176
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 350430964  177 TRFFTLHFLLPFMITGLALTHLTFLHETG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-274 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 570.30  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964   1 MAPNLRKSHPLLKMANNALIDLPTPPNISTWWNFGSLLGVCLVTQILTGLLLAAHYTADTSLAFSSVAHTCRNVQYGWLI 80
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964  81 HNLHANGASLFFMCIYLHIARGFYYGSYLYKETWNTGVTLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQT 160
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964 161 LVEWAWGGFSVDNPTLTRFFTLHFLLPFMITGLALTHLTFLHETGSNNPLGISSNCDKIPFHPYFSLKDLLGFTIMLPLL 240
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                        250       260       270
                 ....*....|....*....|....*....|....
gi 350430964 241 TTLALFSPNLLGDPENFTPANPLVTPPHIKPDWY 274
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWY 274
CYTB MTH00131
cytochrome b; Provisional
 1-274 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 523.45  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964   1 MApNLRKSHPLLKMANNALIDLPTPPNISTWWNFGSLLGVCLVTQILTGLLLAAHYTADTSLAFSSVAHTCRNVQYGWLI 80
Cdd:MTH00131   1 MA-SLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLI 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964  81 HNLHANGASLFFMCIYLHIARGFYYGSYLYKETWNTGVTLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQT 160
Cdd:MTH00131  80 RNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964 161 LVEWAWGGFSVDNPTLTRFFTLHFLLPFMITGLALTHLTFLHETGSNNPLGISSNCDKIPFHPYFSLKDLLGFTIMLPLL 240
Cdd:MTH00131 160 LVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLAL 239

                        250       260       270
                 ....*....|....*....|....*....|....
gi 350430964 241 TTLALFSPNLLGDPENFTPANPLVTPPHIKPDWY 274
Cdd:MTH00131 240 TSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWY 273
CYTB MTH00074
cytochrome b; Provisional
 1-274 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 509.61  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964   1 MAPNLRKSHPLLKMANNALIDLPTPPNISTWWNFGSLLGVCLVTQILTGLLLAAHYTADTSLAFSSVAHTCRNVQYGWLI 80
Cdd:MTH00074   1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964  81 HNLHANGASLFFMCIYLHIARGFYYGSYLYKETWNTGVTLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQT 160
Cdd:MTH00074  81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964 161 LVEWAWGGFSVDNPTLTRFFTLHFLLPFMITGLALTHLTFLHETGSNNPLGISSNCDKIPFHPYFSLKDLLGFTIMLPLL 240
Cdd:MTH00074 161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                        250       260       270
                 ....*....|....*....|....*....|....
gi 350430964 241 TTLALFSPNLLGDPENFTPANPLVTPPHIKPDWY 274
Cdd:MTH00074 241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWY 274
CYTB MTH00100
cytochrome b; Provisional
 4-274 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 509.18  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964   4 NLRKSHPLLKMANNALIDLPTPPNISTWWNFGSLLGVCLVTQILTGLLLAAHYTADTSLAFSSVAHTCRNVQYGWLIHNL 83
Cdd:MTH00100   3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964  84 HANGASLFFMCIYLHIARGFYYGSYLYKETWNTGVTLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVE 163
Cdd:MTH00100  83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964 164 WAWGGFSVDNPTLTRFFTLHFLLPFMITGLALTHLTFLHETGSNNPLGISSNCDKIPFHPYFSLKDLLGFTIMLPLLTTL 243
Cdd:MTH00100 163 WIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLL 242

                        250       260       270
                 ....*....|....*....|....*....|.
gi 350430964 244 ALFSPNLLGDPENFTPANPLVTPPHIKPDWY 274
Cdd:MTH00100 243 VLFSPDLLGDPDNYTPANPLNTPPHIKPEWY 273
CYTB MTH00156
cytochrome b; Provisional
 12-274 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 501.62  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964  12 LKMANNALIDLPTPPNISTWWNFGSLLGVCLVTQILTGLLLAAHYTADTSLAFSSVAHTCRNVQYGWLIHNLHANGASLF 91
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964  92 FMCIYLHIARGFYYGSYLYKETWNTGVTLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSV 171
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964 172 DNPTLTRFFTLHFLLPFMITGLALTHLTFLHETGSNNPLGISSNCDKIPFHPYFSLKDLLGFTIMLPLLTTLALFSPNLL 251
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260
                 ....*....|....*....|...
gi 350430964 252 GDPENFTPANPLVTPPHIKPDWY 274
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWY 263
CYTB MTH00191
cytochrome b; Provisional
 5-274 1.49e-178

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 495.97  E-value: 1.49e-178
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964   5 LRKSHPLLKMANNALIDLPTPPNISTWWNFGSLLGVCLVTQILTGLLLAAHYTADTSLAFSSVAHTCRNVQYGWLIHNLH 84
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964  85 ANGASLFFMCIYLHIARGFYYGSYLYKETWNTGVTLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEW 164
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964 165 AWGGFSVDNPTLTRFFTLHFLLPFMITGLALTHLTFLHETGSNNPLGISSNCDKIPFHPYFSLKDLLGFTIMLPLLTTLA 244
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                        250       260       270
                 ....*....|....*....|....*....|
gi 350430964 245 LFSPNLLGDPENFTPANPLVTPPHIKPDWY 274
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKPEWY 270
CYTB MTH00145
cytochrome b; Provisional
 5-274 4.98e-173

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 482.48  E-value: 4.98e-173
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964   5 LRKSHPLLKMANNALIDLPTPPNISTWWNFGSLLGVCLVTQILTGLLLAAHYTADTSLAFSSVAHTCRNVQYGWLIHNLH 84
Cdd:MTH00145   5 LRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964  85 ANGASLFFMCIYLHIARGFYYGSYLYKETWNTGVTLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEW 164
Cdd:MTH00145  85 ANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964 165 AWGGFSVDNPTLTRFFTLHFLLPFMITGLALTHLTFLHETGSNNPLGISSNCDKIPFHPYFSLKDLLGFTIMLPLLTTLA 244
Cdd:MTH00145 165 VWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLV 244

                        250       260       270
                 ....*....|....*....|....*....|
gi 350430964 245 LFSPNLLGDPENFTPANPLVTPPHIKPDWY 274
Cdd:MTH00145 245 LFFPNLLGDPENFIPANPMVTPVHIQPEWY 274
CYTB MTH00016
cytochrome b; Validated
 1-274 3.10e-163

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 457.60  E-value: 3.10e-163
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964   1 MAPNLRKSHPLLKMANNALIDLPTPPNISTWWNFGSLLGVCLVTQILTGLLLAAHYTADTSLAFSSVAHTCRNVQYGWLI 80
Cdd:MTH00016   1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964  81 HNLHANGASLFFMCIYLHIARGFYYGSYLYKETWNTGVTLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQT 160
Cdd:MTH00016  81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964 161 LVEWAWGGFSVDNPTLTRFFTLHFLLPFMITGLALTHLTFLHETGSNNPLGISSNCDKIPFHPYFSLKDLLGFTIMLPLL 240
Cdd:MTH00016 161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                        250       260       270
                 ....*....|....*....|....*....|....
gi 350430964 241 TTLALFSPNLLGDPENFTPANPLVTPPHIKPDWY 274
Cdd:MTH00016 241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWY 274
CYTB MTH00034
cytochrome b; Validated
 5-274 2.53e-161

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 453.01  E-value: 2.53e-161
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964   5 LRKSHPLLKMANNALIDLPTPPNISTWWNFGSLLGVCLVTQILTGLLLAAHYTADTSLAFSSVAHTCRNVQYGWLIHNLH 84
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964  85 ANGASLFFMCIYLHIARGFYYGSYLYKETWNTGVTLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEW 164
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQW 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964 165 AWGGFSVDNPTLTRFFTLHFLLPFMITGLALTHLTFLHETGSNNPLGISSNCDKIPFHPYFSLKDLLGFTIMLPLLTTLA 244
Cdd:MTH00034 164 IWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLA 243

                        250       260       270
                 ....*....|....*....|....*....|
gi 350430964 245 LFSPNLLGDPENFTPANPLVTPPHIKPDWY 274
Cdd:MTH00034 244 LLFPTALNDPENFIPANPLVTPPHIQPEWY 273
CYTB MTH00224
cytochrome b; Provisional
 1-274 1.33e-137

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 392.75  E-value: 1.33e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964   1 MAPNLRKSHPLLKMANNALIDLPTPPNISTWWNFGSLLGVCLVTQILTGLLLAAHYTADTSLAFSSVAHTCRNVQYGWLI 80
Cdd:MTH00224   1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964  81 HNLHANGASLFFMCIYLHIARGFYYGSYLYKETWNTGVTLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQT 160
Cdd:MTH00224  81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964 161 LVEWAWGGFSVDNPTLTRFFTLHFLLPFMITGLALTHLTFLHETGSNNPLGISSNCDKIPFHPYFSLKDLLGFTIMLPLL 240
Cdd:MTH00224 161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240

                        250       260       270
                 ....*....|....*....|....*....|....
gi 350430964 241 TTLALFSPNLLGDPENFTPANPLVTPPHIKPDWY 274
Cdd:MTH00224 241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWY 274
CYTB MTH00053
cytochrome b; Provisional
 1-274 2.37e-134

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 384.44  E-value: 2.37e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964   1 MAPNLRKSHPLLKMANNALIDLPTPPNISTWWNFGSLLGVCLVTQILTGLLLAAHYTADTSLAFSSVAHTCRNVQYGWLI 80
Cdd:MTH00053   1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964  81 HNLHANGASLFFMCIYLHIARGFYYGSYLYKETWNTGVTLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQT 160
Cdd:MTH00053  81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964 161 LVEWAWGGFSVDNPTLTRFFTLHFLLPFMITGLALTHLTFLHETGSNNPLGISSNCDKIPFHPYFSLKDLLGFTIMLPLL 240
Cdd:MTH00053 161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                        250       260       270
                 ....*....|....*....|....*....|....
gi 350430964 241 TTLALFSPNLLGDPENFTPANPLVTPPHIKPDWY 274
Cdd:MTH00053 241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWY 274
CYTB MTH00022
cytochrome b; Validated
 5-274 8.07e-134

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 383.28  E-value: 8.07e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964   5 LRKSHPLLKMANNALIDLPTPPNISTWWNFGSLLGVCLVTQILTGLLLAAHYTADTSLAFSSVAHTCRNVQYGWLIHNLH 84
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964  85 ANGASLFFMCIYLHIARGFYYGSYLYKETWNTGVTLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEW 164
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQW 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964 165 AWGGFSVDNPTLTRFFTLHFLLPFMITGLALTHLTFLHETGSNNPLGISSNCDKIPFHPYFSLKDLLGFTIMLPLLTTLA 244
Cdd:MTH00022 163 VWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIV 242

                        250       260       270
                 ....*....|....*....|....*....|
gi 350430964 245 LFSPNLLGDPENFTPANPLVTPPHIKPDWY 274
Cdd:MTH00022 243 YFAPNLLGDPENFIQANSLVTPVHIQPEWY 272
CYTB MTH00033
cytochrome b; Provisional
 17-274 5.53e-105

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 309.95  E-value: 5.53e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964  17 NALIDLPTPPNISTWWNFGSLLGVCLVTQILTGLLLAAHYTADTSLAFSSVAHTCRNVQYGWLIHNLHANGASLFFMCIY 96
Cdd:MTH00033  13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964  97 LHIARGFYYGSYLYKETWNTGVTLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTL 176
Cdd:MTH00033  93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964 177 TRFFTLHFLLPFMITGLALTHLTFLHETGSNNPLGISSNCDKIPFHPYFSLKDLLGFTIMLPLLTTLALFS--PNLLGDP 254
Cdd:MTH00033 173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDP 252

                        250       260
                 ....*....|....*....|
gi 350430964 255 ENFTPANPLVTPPHIKPDWY 274
Cdd:MTH00033 253 ENFIQANPLVTPVHIQPEWY 272
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
17-274 2.54e-101

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 300.94  E-value: 2.54e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964  17 NALIDLPTPPNISTWWNFGSLLGVCLVTQILTGLLLAAHYTADTSLAFSSVAHTCRNVQYGWLIHNLHANGASLFFMCIY 96
Cdd:COG1290   25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964  97 LHIARGFYYGSYlyKE----TWNTGVTLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVD 172
Cdd:COG1290  105 LHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPG 182

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964 173 NPTLTRFFTLH-FLLPFMITGLALTHLTFLHETGSNNPLGI----SSNCDKIPFHPYFSLKDLLGFTIMLPLLTTLALFS 247
Cdd:COG1290  183 DATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFF 262

                        250       260
                 ....*....|....*....|....*..
gi 350430964 248 PNllGDPENFTPANPLVTPPHIKPDWY 274
Cdd:COG1290  263 PI--NPPPNYGPANPLATPAHIQPDWY 287
CYTB MTH00086
cytochrome b; Provisional
 13-274 8.87e-100

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 295.70  E-value: 8.87e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964  13 KMANNALIDLPTPPNISTWWNFGSLLGVCLVTQILTGLLLAAHYTADTSLAFSSVAHTCRNVQYGWLIHNLHANGASLFF 92
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964  93 MCIYLHIARGFYYGSYLYKETWNTGVTLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVD 172
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964 173 NPTLTRFFTLHFLLPFMITGLALTHLTFLHETGSNNPLGISSNCDKIPFHPYFSLKDLLGFTIMLpLLTTLALFSPNLLG 252
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWL-VFIIFSLFYPFNLG 239

                        250       260
                 ....*....|....*....|..
gi 350430964 253 DPENFTPANPLVTPPHIKPDWY 274
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWY 261
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 1.69e-95

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 279.25  E-value: 1.69e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964  10 PLLKMANNALIDLPTPPNISTWWNFGSLLGVCLVTQILTGLLLAAHYTADTSLAFSSVAHTCRNVQYGWLIHNLHANGAS 89
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964  90 LFFMCIYLHIARGFYYGSY--LYKETWNTGVTLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWG 167
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 350430964 168 GFSVDNPTLTRFFTLHFLLPFMITGLALTHLTFLHETGSN 207
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 2.42e-83

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 248.07  E-value: 2.42e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964   19 LIDLPTPPNISTWWNFGSLLGVCLVTQILTGLLLAAHYTADTSLAFSSVAHTCRNVQYGWLIHNLHANGASLFFMCIYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964   99 IARGFYYG--SYLYKETWNTGVTLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTL 176
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 350430964  177 TRFFTLHFLLPFMITGLALTHLTFLHETG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00046
cytochrome b; Validated
 11-274 1.29e-74

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 231.41  E-value: 1.29e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964  11 LLKMANNALIDLPTPPNISTWWNFGSLLGVCLVTQILTGLLLAAHYTADTSLAFSSVAHTCRNVQYGWLIHNLHANGASL 90
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964  91 FFMCIYLHIARGFYYGSYLYKETWNTGVTLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFS 170
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964 171 VDNPTLTRFFTLHFLLPFMITGLALTHLTFLHETGSNNPLGISSN-CDKIPFHPYFSLKDLLGFTIMLPLLTTLALFSPN 249
Cdd:MTH00046 161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                        250       260
                 ....*....|....*....|....*
gi 350430964 250 LLGDPENFTPANPLVTPPHIKPDWY 274
Cdd:MTH00046 241 LVLDIEAYLEADPLVTPVSIKPEWY 265
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
89-254 9.99e-48

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 156.63  E-value: 9.99e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964   89 SLFFMCIYLHIARGFYYGSYLYKE--TWNTGVTLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAW 166
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964  167 GGFSVDNPTLTRFFTLHF-LLPFMITGLALTHLTFLHETGSNNPLGISSNCDKIPFHPYFSLKDLLGFTIMLPLLTTLAL 245
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 350430964  246 FSPNLLGDP 254
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 34-210 1.21e-35

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 127.14  E-value: 1.21e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964  34 FGSLLGVCLVTQILTGLLLAAHYTADTSLAFSSVAHTCRNVQYGWLIHNLHANGASLFFMCIYLHIARGFYYGSYLYKE- 112
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964 113 -TWNTGVTLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFTLH-FLLPFMI 190
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170       180
                 ....*....|....*....|
gi 350430964 191 TGLALTHLTFLHETGSNNPL 210
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 25-210 4.84e-34

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 122.52  E-value: 4.84e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964  25 PPNISTWWNFGSLLGVCLVTQILTGLLLAAHYTADTSLAFSSVAHTCRNVQYGWLIHNLHANGASLFFMCIYLHIARGFY 104
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430964 105 YGSYLYKE--TWNTGVTLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFTL 182
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*....
gi 350430964 183 H-FLLPFMITGLALTHLTFLHETGSNNPL 210
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 208-274 4.32e-23

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 91.94  E-value: 4.32e-23
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 350430964 208 NPLGISSNCDKIPFHPYFSLKDLLGFTIMLPLLTTLALFSPNLLGDPENFTPANPLVTPPHIKPDWY 274
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWY 67
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
259-274 1.72e-04

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 39.77  E-value: 1.72e-04
                          10
                  ....*....|....*.
gi 350430964  259 PANPLVTPPHIKPDWY 274
Cdd:pfam00032   1 PANPLVTPAHIVPEWY 16
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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