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Conserved domains on  [gi|351650701|gb|AEQ58801|]
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cytochrome b, partial (mitochondrion) [Myrmeleotettix maculatus]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-267 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 501.62  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701   1 NNGWIIRTLHANGASMFFICIYLHVGRGIYYGSFMYM*TWMIGTIILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:MTH00156  64 NYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAI 143

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701  81 PYLGTDLVQWVWGGFAVDNAT*NRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDK*PFHPYFTFKDSITFV 160
Cdd:MTH00156 144 PYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFI 223

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701 161 IMTSLLIFLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMIMPFYNKTKFR 240
Cdd:MTH00156 224 IMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFR 303

                        250       260
                 ....*....|....*....|....*..
gi 351650701 241 GIQFYPINQILFWIMVIVVILLTWIGK 267
Cdd:MTH00156 304 GNQFYPINKILFWIFVNIVILLTWIGA 330
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-267 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 501.62  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701   1 NNGWIIRTLHANGASMFFICIYLHVGRGIYYGSFMYM*TWMIGTIILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:MTH00156  64 NYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAI 143

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701  81 PYLGTDLVQWVWGGFAVDNAT*NRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDK*PFHPYFTFKDSITFV 160
Cdd:MTH00156 144 PYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFI 223

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701 161 IMTSLLIFLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMIMPFYNKTKFR 240
Cdd:MTH00156 224 IMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFR 303

                        250       260
                 ....*....|....*....|....*..
gi 351650701 241 GIQFYPINQILFWIMVIVVILLTWIGK 267
Cdd:MTH00156 304 GNQFYPINKILFWIFVNIVILLTWIGA 330
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
3-266 3.43e-88

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 267.04  E-value: 3.43e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701   3 GWIIRTLHANGASMFFICIYLHVGRGIYYGSFMY--M*TWMIGTIILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:COG1290   85 GWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKprELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAI 164

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701  81 PYLGTDLVQWVWGGFAVDNAT*NRFFTFH-FVLPFVIAAMAAIHLFFLHQTGSNNPIG----LNSNIDK*PFHPYFTFKD 155
Cdd:COG1290  165 PVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKD 244

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701 156 SITFVIMtsLLIFLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIP--NKLGGVIALFLSISILMIMPF 233
Cdd:COG1290  245 GFGFFVF--LGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPF 322

                        250       260       270
                 ....*....|....*....|....*....|...
gi 351650701 234 YNKTKFRGIQFYPINQILFWIMVIVVILLTWIG 266
Cdd:COG1290  323 LDRSPVRSPRYRPVRTALGVAFIVFFIVLTILG 355
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-133 9.03e-52

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 167.55  E-value: 9.03e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701   1 NNGWIIRTLHANGASMFFICIYLHVGRGIYYGSFM--YM*TWMIGTIILFLVMATAFMGYVLPW****FWGATVITNLLS 78
Cdd:cd00284   66 NFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFS 145

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 351650701  79 AIPYLGTDLVQWVWGGFAVDNAT*NRFFTFHFVLPFVIAAMAAIHLFFLHQTGSN 133
Cdd:cd00284  146 AIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-131 9.62e-48

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 157.16  E-value: 9.62e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701    1 NNGWIIRTLHANGASMFFICIYLHVGRGIYYGSFMYM*--TWMIGTIILFLVMATAFMGYVLPW****FWGATVITNLLS 78
Cdd:pfam00033  57 NFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLS 136

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 351650701   79 AIPYLGTDLVQWVWGGFAVDNAT*NRFFTFHFVLPFVIAAMAAIHLFFLHQTG 131
Cdd:pfam00033 137 AIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 160-266 7.22e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 59.04  E-value: 7.22e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701  160 VIMTSL--LIFLCLINPYMLGDPdnfvpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMIMPFY-NK 236
Cdd:TIGR01156  43 VILGTIacVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNV 117

                          90       100       110
                  ....*....|....*....|....*....|
gi 351650701  237 TKFRGIQFYPINQILFWIMVIVVIlltWIG 266
Cdd:TIGR01156 118 NKFQNPFRRPVATTVFLFGTVVAL---WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-267 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 501.62  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701   1 NNGWIIRTLHANGASMFFICIYLHVGRGIYYGSFMYM*TWMIGTIILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:MTH00156  64 NYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAI 143

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701  81 PYLGTDLVQWVWGGFAVDNAT*NRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDK*PFHPYFTFKDSITFV 160
Cdd:MTH00156 144 PYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFI 223

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701 161 IMTSLLIFLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMIMPFYNKTKFR 240
Cdd:MTH00156 224 IMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFR 303

                        250       260
                 ....*....|....*....|....*..
gi 351650701 241 GIQFYPINQILFWIMVIVVILLTWIGK 267
Cdd:MTH00156 304 GNQFYPINKILFWIFVNIVILLTWIGA 330
CYTB MTH00145
cytochrome b; Provisional
 1-267 7.92e-156

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 438.57  E-value: 7.92e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701   1 NNGWIIRTLHANGASMFFICIYLHVGRGIYYGSFMYM*TWMIGTIILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:MTH00145  75 NYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAI 154

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701  81 PYLGTDLVQWVWGGFAVDNAT*NRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDK*PFHPYFTFKDSITFV 160
Cdd:MTH00145 155 PYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFV 234

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701 161 IMTSLLIFLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMIMPFYNKTKFR 240
Cdd:MTH00145 235 VLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFR 314

                        250       260
                 ....*....|....*....|....*..
gi 351650701 241 GIQFYPINQILFWIMVIVVILLTWIGK 267
Cdd:MTH00145 315 SLSFYPLNQVLFWIFVGNFFILTWIGA 341
CYTB MTH00119
cytochrome b; Provisional
 1-266 1.67e-154

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 435.10  E-value: 1.67e-154
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701   1 NNGWIIRTLHANGASMFFICIYLHVGRGIYYGSFMYM*TWMIGTIILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:MTH00119  75 QYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAI 154

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701  81 PYLGTDLVQWVWGGFAVDNAT*NRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDK*PFHPYFTFKDSITFV 160
Cdd:MTH00119 155 PYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLT 234

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701 161 IMTSLLIFLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMIMPFYNKTKFR 240
Cdd:MTH00119 235 LMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQR 314

                        250       260
                 ....*....|....*....|....*.
gi 351650701 241 GIQFYPINQILFWIMVIVVILLTWIG 266
Cdd:MTH00119 315 SMTFRPLSQLLFWTLVANLLILTWIG 340
CYTB MTH00074
cytochrome b; Provisional
 1-266 1.46e-152

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 430.26  E-value: 1.46e-152
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701   1 NNGWIIRTLHANGASMFFICIYLHVGRGIYYGSFMYM*TWMIGTIILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:MTH00074  75 NYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAI 154

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701  81 PYLGTDLVQWVWGGFAVDNAT*NRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDK*PFHPYFTFKDSITFV 160
Cdd:MTH00074 155 PYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFL 234

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701 161 IMTSLLIFLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMIMPFYNKTKFR 240
Cdd:MTH00074 235 IMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQR 314

                        250       260
                 ....*....|....*....|....*.
gi 351650701 241 GIQFYPINQILFWIMVIVVILLTWIG 266
Cdd:MTH00074 315 SLMFRPLTQILFWLLVANTLILTWIG 340
CYTB MTH00100
cytochrome b; Provisional
 1-266 4.57e-152

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 429.06  E-value: 4.57e-152
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701   1 NNGWIIRTLHANGASMFFICIYLHVGRGIYYGSFMYM*TWMIGTIILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:MTH00100  74 NYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAI 153

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701  81 PYLGTDLVQWVWGGFAVDNAT*NRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDK*PFHPYFTFKDSITFV 160
Cdd:MTH00100 154 PYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLL 233

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701 161 IMTSLLIFLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMIMPFYNKTKFR 240
Cdd:MTH00100 234 LLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQR 313

                        250       260
                 ....*....|....*....|....*.
gi 351650701 241 GIQFYPINQILFWIMVIVVILLTWIG 266
Cdd:MTH00100 314 SMMFRPLSQCLFWLLVADLLTLTWIG 339
CYTB MTH00191
cytochrome b; Provisional
 1-266 5.29e-152

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 428.18  E-value: 5.29e-152
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701   1 NNGWIIRTLHANGASMFFICIYLHVGRGIYYGSFMYM*TWMIGTIILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:MTH00191  71 NYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAI 150

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701  81 PYLGTDLVQWVWGGFAVDNAT*NRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDK*PFHPYFTFKDSITFV 160
Cdd:MTH00191 151 PYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFF 230

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701 161 IMTSLLIFLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMIMPFYNKTKFR 240
Cdd:MTH00191 231 ILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQR 310

                        250       260
                 ....*....|....*....|....*.
gi 351650701 241 GIQFYPINQILFWIMVIVVILLTWIG 266
Cdd:MTH00191 311 SNTFRPLTQVVFWLWVANFILLTWLG 336
CYTB MTH00131
cytochrome b; Provisional
 1-266 1.48e-151

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 427.92  E-value: 1.48e-151
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701   1 NNGWIIRTLHANGASMFFICIYLHVGRGIYYGSFMYM*TWMIGTIILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:MTH00131  74 NYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAV 153

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701  81 PYLGTDLVQWVWGGFAVDNAT*NRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDK*PFHPYFTFKDSITFV 160
Cdd:MTH00131 154 PYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFA 233

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701 161 IMTSLLIFLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMIMPFYNKTKFR 240
Cdd:MTH00131 234 ILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQR 313

                        250       260
                 ....*....|....*....|....*.
gi 351650701 241 GIQFYPINQILFWIMVIVVILLTWIG 266
Cdd:MTH00131 314 GLTFRPLTQFLFWTLVADVLILTWIG 339
CYTB MTH00016
cytochrome b; Validated
 1-266 1.40e-147

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 417.54  E-value: 1.40e-147
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701   1 NNGWIIRTLHANGASMFFICIYLHVGRGIYYGSFMYM*TWMIGTIILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:MTH00016  75 NYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAI 154

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701  81 PYLGTDLVQWVWGGFAVDNAT*NRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDK*PFHPYFTFKDSITFV 160
Cdd:MTH00016 155 PYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFI 234

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701 161 IMTSLLIFLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMIMPFYNKTKFR 240
Cdd:MTH00016 235 VMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFR 314

                        250       260
                 ....*....|....*....|....*.
gi 351650701 241 GIQFYPINQILFWIMVIVVILLTWIG 266
Cdd:MTH00016 315 GLSFYPLNQILFWLLVSNFLLLTWIG 340
CYTB MTH00034
cytochrome b; Validated
 1-266 3.18e-134

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 383.67  E-value: 3.18e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701   1 NNGWIIRTLHANGASMFFICIYLHVGRGIYYGSFMYM*TWMIGTIILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:MTH00034  74 NYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAV 153

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701  81 PYLGTDLVQWVWGGFAVDNAT*NRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDK*PFHPYFTFKDSITFV 160
Cdd:MTH00034 154 PYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFL 233

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701 161 IMTSLLIFLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMIMPFYNKTKFR 240
Cdd:MTH00034 234 ILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQ 313

                        250       260
                 ....*....|....*....|....*.
gi 351650701 241 GIQFYPINQILFWIMVIVVILLTWIG 266
Cdd:MTH00034 314 SSTFRPLSQIAFWLLIATFFILTWIG 339
CYTB MTH00022
cytochrome b; Validated
 1-266 7.97e-123

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 354.78  E-value: 7.97e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701   1 NNGWIIRTLHANGASMFFICIYLHVGRGIYYGSFMYM*TWMIGTIILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:MTH00022  73 NYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAI 152

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701  81 PYLGTDLVQWVWGGFAVDNAT*NRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDK*PFHPYFTFKDSITFV 160
Cdd:MTH00022 153 PYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIV 232

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701 161 IMTSLLIFLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMIMPFYNKTKFR 240
Cdd:MTH00022 233 VLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLR 312

                        250       260
                 ....*....|....*....|....*.
gi 351650701 241 GIQFYPINQILFWIMVIVVILLTWIG 266
Cdd:MTH00022 313 GLTFRPLGRMAFWFLIVDFILLTWIG 338
CYTB MTH00224
cytochrome b; Provisional
 1-266 1.13e-121

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 351.92  E-value: 1.13e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701   1 NNGWIIRTLHANGASMFFICIYLHVGRGIYYGSFMYM*TWMIGTIILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:MTH00224  75 NYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAI 154

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701  81 PYLGTDLVQWVWGGFAVDNAT*NRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDK*PFHPYFTFKDSITFV 160
Cdd:MTH00224 155 PYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYL 234

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701 161 IMTSLLIFLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMIMPFYNKTKFR 240
Cdd:MTH00224 235 IAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKR 314

                        250       260
                 ....*....|....*....|....*.
gi 351650701 241 GIQFYPINQILFWIMVIVVILLTWIG 266
Cdd:MTH00224 315 SLPFYPLNQLLFWLLVTSWAILTWIG 340
CYTB MTH00053
cytochrome b; Provisional
 1-266 5.60e-119

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 345.15  E-value: 5.60e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701   1 NNGWIIRTLHANGASMFFICIYLHVGRGIYYGSFMYM*TWMIGTIILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:MTH00053  75 NYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAI 154

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701  81 PYLGTDLVQWVWGGFAVDNAT*NRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDK*PFHPYFTFKDSITFV 160
Cdd:MTH00053 155 PYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAV 234

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701 161 IMTSLLIFLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMIMPFYNKTKFR 240
Cdd:MTH00053 235 ILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFR 314

                        250       260
                 ....*....|....*....|....*.
gi 351650701 241 GIQFYPINQILFWIMVIVVILLTWIG 266
Cdd:MTH00053 315 GLSFRPLSKILFWFLVGDFFLLTWIG 340
CYTB MTH00033
cytochrome b; Provisional
 1-266 5.27e-94

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 281.83  E-value: 5.27e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701   1 NNGWIIRTLHANGASMFFICIYLHVGRGIYYGSFMYM*TWMIGTIILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:MTH00033  71 NYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAI 150

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701  81 PYLGTDLVQWVWGGFAVDNAT*NRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDK*PFHPYFTFKDSITFV 160
Cdd:MTH00033 151 PSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFL 230

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701 161 IMTSLLIFLClINPY---MLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMIMPFYNKT 237
Cdd:MTH00033 231 ILFGVFVIIG-IEPRietLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRS 309

                        250       260
                 ....*....|....*....|....*....
gi 351650701 238 KFRGIQFYPINQILFWIMVIVVILLTWIG 266
Cdd:MTH00033 310 KIRSLTFNPTGKFFFWFIVGDFIILTWIG 338
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
3-266 3.43e-88

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 267.04  E-value: 3.43e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701   3 GWIIRTLHANGASMFFICIYLHVGRGIYYGSFMY--M*TWMIGTIILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:COG1290   85 GWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKprELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAI 164

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701  81 PYLGTDLVQWVWGGFAVDNAT*NRFFTFH-FVLPFVIAAMAAIHLFFLHQTGSNNPIG----LNSNIDK*PFHPYFTFKD 155
Cdd:COG1290  165 PVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKD 244

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701 156 SITFVIMtsLLIFLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIP--NKLGGVIALFLSISILMIMPF 233
Cdd:COG1290  245 GFGFFVF--LGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPF 322

                        250       260       270
                 ....*....|....*....|....*....|...
gi 351650701 234 YNKTKFRGIQFYPINQILFWIMVIVVILLTWIG 266
Cdd:COG1290  323 LDRSPVRSPRYRPVRTALGVAFIVFFIVLTILG 355
CYTB MTH00086
cytochrome b; Provisional
 1-266 1.50e-86

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 261.80  E-value: 1.50e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701   1 NNGWIIRTLHANGASMFFICIYLHVGRGIYYGSFMYM*TWMIGTIILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:MTH00086  63 NFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVI 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701  81 PYLGTDLVQWVWGGFAVDNAT*NRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDK*PFHPYFTFKDSITFV 160
Cdd:MTH00086 143 PIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNII 222

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701 161 IMTsLLIFLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMIMPFYNktkFR 240
Cdd:MTH00086 223 FWL-VFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVN---NY 298

                        250       260
                 ....*....|....*....|....*.
gi 351650701 241 GIQFYPINQILFWIMVIVVILLTWIG 266
Cdd:MTH00086 299 TSCLNKLNKFLVFSFIVVNVILSWLG 324
CYTB MTH00046
cytochrome b; Validated
 4-266 1.72e-63

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 202.52  E-value: 1.72e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701   4 WIIRTLHANGASMFFICIYLHVGRGIYYGSFMYM*TWMIGTIILFLVMATAFMGYVLPW****FWGATVITNLLSAIPYL 83
Cdd:MTH00046  68 WCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIV 147

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701  84 GTDLVQWVWGGFAVDNAT*NRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNI-DK*PFHPYFTFKDSITFVIM 162
Cdd:MTH00046 148 GSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVV 227

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701 163 TSLLIFLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIaLFLSISILMIMPFYNKTKFRGI 242
Cdd:MTH00046 228 CSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVPTFNGSSVYSV 306

                        250       260
                 ....*....|....*....|....
gi 351650701 243 qfypINQILFWIMVIVVILLTWIG 266
Cdd:MTH00046 307 ----WRQVNFWLIVSLFFSLSYLG 326
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-133 9.03e-52

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 167.55  E-value: 9.03e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701   1 NNGWIIRTLHANGASMFFICIYLHVGRGIYYGSFM--YM*TWMIGTIILFLVMATAFMGYVLPW****FWGATVITNLLS 78
Cdd:cd00284   66 NFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFS 145

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 351650701  79 AIPYLGTDLVQWVWGGFAVDNAT*NRFFTFHFVLPFVIAAMAAIHLFFLHQTGSN 133
Cdd:cd00284  146 AIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-131 9.62e-48

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 157.16  E-value: 9.62e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701    1 NNGWIIRTLHANGASMFFICIYLHVGRGIYYGSFMYM*--TWMIGTIILFLVMATAFMGYVLPW****FWGATVITNLLS 78
Cdd:pfam00033  57 NFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLS 136

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 351650701   79 AIPYLGTDLVQWVWGGFAVDNAT*NRFFTFHFVLPFVIAAMAAIHLFFLHQTG 131
Cdd:pfam00033 137 AIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
15-180 2.92e-44

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 147.39  E-value: 2.92e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701   15 SMFFICIYLHVGRGIYYGSFMY--M*TWMIGTIILFLVMATAFMGYVLPW****FWGATVITNLLSAIPYLGTDLVQWVW 92
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKprELNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701   93 GGFAVDNAT*NRFFTFHF-VLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDK*PFHPYFTFKDSITFVIMTSLLIFLCL 171
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 351650701  172 INPYMLGDP 180
Cdd:pfam13631 161 INPIWLGGP 169
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 134-267 3.14e-43

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 143.94  E-value: 3.14e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701 134 NPIGLNSNIDK*PFHPYFTFKDSITFVIMTSLLIFLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPN 213
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 351650701 214 KLGGVIALFLSISILMIMPFYNKTKFRGiQFYPINQILFWIMVIVVILLTWIGK 267
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGI 133
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
185-267 3.66e-35

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 121.82  E-value: 3.66e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701  185 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMIMPFYNKTKFRGIQFYPINQILFWIMVIVVILLTW 264
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80


                  ...
gi 351650701  265 IGK 267
Cdd:pfam00032  81 LGK 83
PRK03735 PRK03735
cytochrome b6; Provisional
 1-136 3.09e-21

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 89.00  E-value: 3.09e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701   1 NNGWIIRTLHANGASMFFICIYLHVGRGIYYGSFM--YM*TWMIGTIILFLVMATAFMGYVLPW****FWGATVITNLLS 78
Cdd:PRK03735  85 AFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKkpRELNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAE 164

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 351650701  79 AIPYLGTDLVQWVWGGFAVDNAT*NRFFTFH-FVLPFVIAAMAAIHLFFLHQTGSNNPI 136
Cdd:PRK03735 165 AIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 1-136 1.32e-17

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 78.99  E-value: 1.32e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701   1 NNGWIIRTLHANGASMFFICIYLHVGRGIYYGSFM--YM*TWMIGTIILFLVMATAFMGYVLPW****FWGATVITNLLS 78
Cdd:CHL00070  77 NFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKkpRELTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPE 156

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 351650701  79 AIPYLGTDLVQWVWGGFAVDNAT*NRFFTFH-FVLPFVIAAMAAIHLFFLHQTGSNNPI 136
Cdd:CHL00070 157 AIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 160-262 4.77e-12

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 62.50  E-value: 4.77e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701 160 VIMTS--LLIFLCLINPYMLGDPdnfvpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMIMPFY-NK 236
Cdd:COG5679   44 VILGTiaLCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIeNV 118

                         90       100
                 ....*....|....*....|....*.
gi 351650701 237 TKFRGIQFYPINQILFWIMVIVVILL 262
Cdd:COG5679  119 NKFQNPFRRPVATAVFLFGTLVTLWL 144
petD CHL00058
cytochrome b6/f complex subunit IV
 164-262 6.21e-12

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 62.33  E-value: 6.21e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701 164 SLLIFLCLINPYMLGDPdnfvpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMIMPFY-NKTKFRGI 242
Cdd:CHL00058  49 ACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNP 123

                         90       100
                 ....*....|....*....|
gi 351650701 243 QFYPINQILFWIMVIVVILL 262
Cdd:CHL00058 124 FRRPVATTVFLIGTAVALWL 143
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 160-266 7.22e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 59.04  E-value: 7.22e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650701  160 VIMTSL--LIFLCLINPYMLGDPdnfvpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMIMPFY-NK 236
Cdd:TIGR01156  43 VILGTIacVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNV 117

                          90       100       110
                  ....*....|....*....|....*....|
gi 351650701  237 TKFRGIQFYPINQILFWIMVIVVIlltWIG 266
Cdd:TIGR01156 118 NKFQNPFRRPVATTVFLFGTVVAL---WLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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