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Conserved domains on  [gi|351650705|gb|AEQ58803|]
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cytochrome b, partial (mitochondrion) [Euthystira brachyptera]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-292 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 521.65  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705   1 NNGWILRTLHANGASMFFICIYLHVGRGIYYGSYL**HTWMIGT*ILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:MTH00156  64 NYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAI 143

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705  81 PYLGTNLVQWVWGGFAVDNATLYGFFTYHVIMPVIIAAMAAIHLFFLHHTGSNNPIGLNSNIEKIPFHPYFTFKDLITFV 160
Cdd:MTH00156 144 PYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFI 223

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705 161 FMSSLLIMLCLINPYMLGDPDNFVTANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFR 240
Cdd:MTH00156 224 IMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFR 303

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 351650705 241 GIQFYPMNQILFWIMVIIVFLLTWIGKRPVEEPYILTGQILTIIYFSYFLIN 292
Cdd:MTH00156 304 GNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-292 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 521.65  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705   1 NNGWILRTLHANGASMFFICIYLHVGRGIYYGSYL**HTWMIGT*ILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:MTH00156  64 NYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAI 143

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705  81 PYLGTNLVQWVWGGFAVDNATLYGFFTYHVIMPVIIAAMAAIHLFFLHHTGSNNPIGLNSNIEKIPFHPYFTFKDLITFV 160
Cdd:MTH00156 144 PYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFI 223

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705 161 FMSSLLIMLCLINPYMLGDPDNFVTANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFR 240
Cdd:MTH00156 224 IMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFR 303

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 351650705 241 GIQFYPMNQILFWIMVIIVFLLTWIGKRPVEEPYILTGQILTIIYFSYFLIN 292
Cdd:MTH00156 304 GNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
3-291 9.21e-86

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 262.03  E-value: 9.21e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705   3 GWILRTLHANGASMFFICIYLHVGRGIYYGSYL**H--TWMIGT*ILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:COG1290   85 GWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAI 164

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705  81 PYLGTNLVQWVWGGFAVDNATLYGFFTYHV-IMPVIIAAMAAIHLFFLHHTGSNNPIG----LNSNIEKIPFHPYFTFKD 155
Cdd:COG1290  165 PVIGTWLVTWLFGGEFPGDATLNRFFALHVlLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKD 244

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705 156 LITFVFMssLLIMLCLINPYMLGDPDNFVTANPLVTPIHIQPEWYFLFAYAILRSIP--NKLGGVIALFLSISILMILPF 233
Cdd:COG1290  245 GFGFFVF--LGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPF 322

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 351650705 234 YNKTQFRGIQFYPMNQILFWIMVIIVFLLTWIGKRPveEPYILTGQILTIIYFSYFLI 291
Cdd:COG1290  323 LDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-133 5.41e-47

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 156.37  E-value: 5.41e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705   1 NNGWILRTLHANGASMFFICIYLHVGRGIYYGSYL**H--TWMIGT*ILFLVMATAFMGYVLPW****FWGATVITNLLS 78
Cdd:cd00284   66 NFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKPRelTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFS 145

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 351650705  79 AIPYLGTNLVQWVWGGFAVDNATLYGFFTYHVIMPVIIAAMAAIHLFFLHHTGSN 133
Cdd:cd00284  146 AIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-131 2.53e-42

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 144.06  E-value: 2.53e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705    1 NNGWILRTLHANGASMFFICIYLHVGRGIYYGSYL**H--TWMIGT*ILFLVMATAFMGYVLPW****FWGATVITNLLS 78
Cdd:pfam00033  57 NFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLS 136

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 351650705   79 AIPYLGTNLVQWVWGGFAVDNATLYGFFTYHVIMPVIIAAMAAIHLFFLHHTG 131
Cdd:pfam00033 137 AIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 164-233 1.51e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 55.96  E-value: 1.51e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705  164 SLLIMLCLINPYMLGDPdnfvtANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPF 233
Cdd:TIGR01156  49 ACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPF 113
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-292 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 521.65  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705   1 NNGWILRTLHANGASMFFICIYLHVGRGIYYGSYL**HTWMIGT*ILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:MTH00156  64 NYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAI 143

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705  81 PYLGTNLVQWVWGGFAVDNATLYGFFTYHVIMPVIIAAMAAIHLFFLHHTGSNNPIGLNSNIEKIPFHPYFTFKDLITFV 160
Cdd:MTH00156 144 PYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFI 223

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705 161 FMSSLLIMLCLINPYMLGDPDNFVTANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFR 240
Cdd:MTH00156 224 IMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFR 303

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 351650705 241 GIQFYPMNQILFWIMVIIVFLLTWIGKRPVEEPYILTGQILTIIYFSYFLIN 292
Cdd:MTH00156 304 GNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00145
cytochrome b; Provisional
 1-293 5.24e-163

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 457.83  E-value: 5.24e-163
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705   1 NNGWILRTLHANGASMFFICIYLHVGRGIYYGSYL**HTWMIGT*ILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:MTH00145  75 NYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAI 154

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705  81 PYLGTNLVQWVWGGFAVDNATLYGFFTYHVIMPVIIAAMAAIHLFFLHHTGSNNPIGLNSNIEKIPFHPYFTFKDLITFV 160
Cdd:MTH00145 155 PYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFV 234

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705 161 FMSSLLIMLCLINPYMLGDPDNFVTANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFR 240
Cdd:MTH00145 235 VLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFR 314

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 351650705 241 GIQFYPMNQILFWIMVIIVFLLTWIGKRPVEEPYILTGQILTIIYFSYFLINI 293
Cdd:MTH00145 315 SLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILP 367
CYTB MTH00119
cytochrome b; Provisional
 1-291 9.38e-158

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 444.73  E-value: 9.38e-158
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705   1 NNGWILRTLHANGASMFFICIYLHVGRGIYYGSYL**HTWMIGT*ILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:MTH00119  75 QYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAI 154

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705  81 PYLGTNLVQWVWGGFAVDNATLYGFFTYHVIMPVIIAAMAAIHLFFLHHTGSNNPIGLNSNIEKIPFHPYFTFKDLITFV 160
Cdd:MTH00119 155 PYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLT 234

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705 161 FMSSLLIMLCLINPYMLGDPDNFVTANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFR 240
Cdd:MTH00119 235 LMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQR 314

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 351650705 241 GIQFYPMNQILFWIMVIIVFLLTWIGKRPVEEPYILTGQILTIIYFSYFLI 291
Cdd:MTH00119 315 SMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLI 365
CYTB MTH00191
cytochrome b; Provisional
 1-291 2.78e-155

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 437.81  E-value: 2.78e-155
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705   1 NNGWILRTLHANGASMFFICIYLHVGRGIYYGSYL**HTWMIGT*ILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:MTH00191  71 NYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAI 150

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705  81 PYLGTNLVQWVWGGFAVDNATLYGFFTYHVIMPVIIAAMAAIHLFFLHHTGSNNPIGLNSNIEKIPFHPYFTFKDLITFV 160
Cdd:MTH00191 151 PYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFF 230

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705 161 FMSSLLIMLCLINPYMLGDPDNFVTANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFR 240
Cdd:MTH00191 231 ILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQR 310

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 351650705 241 GIQFYPMNQILFWIMVIIVFLLTWIGKRPVEEPYILTGQILTIIYFSYFLI 291
Cdd:MTH00191 311 SNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
CYTB MTH00131
cytochrome b; Provisional
 1-291 1.93e-154

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 436.39  E-value: 1.93e-154
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705   1 NNGWILRTLHANGASMFFICIYLHVGRGIYYGSYL**HTWMIGT*ILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:MTH00131  74 NYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAV 153

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705  81 PYLGTNLVQWVWGGFAVDNATLYGFFTYHVIMPVIIAAMAAIHLFFLHHTGSNNPIGLNSNIEKIPFHPYFTFKDLITFV 160
Cdd:MTH00131 154 PYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFA 233

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705 161 FMSSLLIMLCLINPYMLGDPDNFVTANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFR 240
Cdd:MTH00131 234 ILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQR 313

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 351650705 241 GIQFYPMNQILFWIMVIIVFLLTWIGKRPVEEPYILTGQILTIIYFSYFLI 291
Cdd:MTH00131 314 GLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLV 364
CYTB MTH00100
cytochrome b; Provisional
 1-291 1.13e-153

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 434.45  E-value: 1.13e-153
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705   1 NNGWILRTLHANGASMFFICIYLHVGRGIYYGSYL**HTWMIGT*ILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:MTH00100  74 NYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAI 153

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705  81 PYLGTNLVQWVWGGFAVDNATLYGFFTYHVIMPVIIAAMAAIHLFFLHHTGSNNPIGLNSNIEKIPFHPYFTFKDLITFV 160
Cdd:MTH00100 154 PYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLL 233

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705 161 FMSSLLIMLCLINPYMLGDPDNFVTANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFR 240
Cdd:MTH00100 234 LLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQR 313

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 351650705 241 GIQFYPMNQILFWIMVIIVFLLTWIGKRPVEEPYILTGQILTIIYFSYFLI 291
Cdd:MTH00100 314 SMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILI 364
CYTB MTH00074
cytochrome b; Provisional
 1-291 3.32e-153

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 433.34  E-value: 3.32e-153
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705   1 NNGWILRTLHANGASMFFICIYLHVGRGIYYGSYL**HTWMIGT*ILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:MTH00074  75 NYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAI 154

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705  81 PYLGTNLVQWVWGGFAVDNATLYGFFTYHVIMPVIIAAMAAIHLFFLHHTGSNNPIGLNSNIEKIPFHPYFTFKDLITFV 160
Cdd:MTH00074 155 PYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFL 234

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705 161 FMSSLLIMLCLINPYMLGDPDNFVTANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFR 240
Cdd:MTH00074 235 IMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQR 314

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 351650705 241 GIQFYPMNQILFWIMVIIVFLLTWIGKRPVEEPYILTGQILTIIYFSYFLI 291
Cdd:MTH00074 315 SLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFII 365
CYTB MTH00016
cytochrome b; Validated
 1-292 5.92e-153

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 432.56  E-value: 5.92e-153
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705   1 NNGWILRTLHANGASMFFICIYLHVGRGIYYGSYL**HTWMIGT*ILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:MTH00016  75 NYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAI 154

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705  81 PYLGTNLVQWVWGGFAVDNATLYGFFTYHVIMPVIIAAMAAIHLFFLHHTGSNNPIGLNSNIEKIPFHPYFTFKDLITFV 160
Cdd:MTH00016 155 PYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFI 234

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705 161 FMSSLLIMLCLINPYMLGDPDNFVTANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFR 240
Cdd:MTH00016 235 VMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFR 314

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 351650705 241 GIQFYPMNQILFWIMVIIVFLLTWIGKRPVEEPYILTGQILTIIYFSYFLIN 292
Cdd:MTH00016 315 GLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMIN 366
CYTB MTH00034
cytochrome b; Validated
 1-291 2.30e-138

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 395.61  E-value: 2.30e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705   1 NNGWILRTLHANGASMFFICIYLHVGRGIYYGSYL**HTWMIGT*ILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:MTH00034  74 NYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAV 153

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705  81 PYLGTNLVQWVWGGFAVDNATLYGFFTYHVIMPVIIAAMAAIHLFFLHHTGSNNPIGLNSNIEKIPFHPYFTFKDLITFV 160
Cdd:MTH00034 154 PYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFL 233

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705 161 FMSSLLIMLCLINPYMLGDPDNFVTANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFR 240
Cdd:MTH00034 234 ILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQ 313

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 351650705 241 GIQFYPMNQILFWIMVIIVFLLTWIGKRPVEEPYILTGQILTIIYFSYFLI 291
Cdd:MTH00034 314 SSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLF 364
CYTB MTH00022
cytochrome b; Validated
 1-293 3.92e-129

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 372.11  E-value: 3.92e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705   1 NNGWILRTLHANGASMFFICIYLHVGRGIYYGSYL**HTWMIGT*ILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:MTH00022  73 NYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAI 152

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705  81 PYLGTNLVQWVWGGFAVDNATLYGFFTYHVIMPVIIAAMAAIHLFFLHHTGSNNPIGLNSNIEKIPFHPYFTFKDLITFV 160
Cdd:MTH00022 153 PYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIV 232

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705 161 FMSSLLIMLCLINPYMLGDPDNFVTANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFR 240
Cdd:MTH00022 233 VLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLR 312

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 351650705 241 GIQFYPMNQILFWIMVIIVFLLTWIGKRPVEEPYILTGQILTIIYFSYFLINI 293
Cdd:MTH00022 313 GLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLI 365
CYTB MTH00053
cytochrome b; Provisional
 1-291 1.09e-126

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 365.95  E-value: 1.09e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705   1 NNGWILRTLHANGASMFFICIYLHVGRGIYYGSYL**HTWMIGT*ILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:MTH00053  75 NYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAI 154

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705  81 PYLGTNLVQWVWGGFAVDNATLYGFFTYHVIMPVIIAAMAAIHLFFLHHTGSNNPIGLNSNIEKIPFHPYFTFKDLITFV 160
Cdd:MTH00053 155 PYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAV 234

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705 161 FMSSLLIMLCLINPYMLGDPDNFVTANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFR 240
Cdd:MTH00053 235 ILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFR 314

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 351650705 241 GIQFYPMNQILFWIMVIIVFLLTWIGKRPVEEPYILTGQILTIIYFSYFLI 291
Cdd:MTH00053 315 GLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLI 365
CYTB MTH00224
cytochrome b; Provisional
 1-292 6.35e-126

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 363.86  E-value: 6.35e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705   1 NNGWILRTLHANGASMFFICIYLHVGRGIYYGSYL**HTWMIGT*ILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:MTH00224  75 NYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAI 154

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705  81 PYLGTNLVQWVWGGFAVDNATLYGFFTYHVIMPVIIAAMAAIHLFFLHHTGSNNPIGLNSNIEKIPFHPYFTFKDLITFV 160
Cdd:MTH00224 155 PYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYL 234

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705 161 FMSSLLIMLCLINPYMLGDPDNFVTANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFR 240
Cdd:MTH00224 235 IAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKR 314

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 351650705 241 GIQFYPMNQILFWIMVIIVFLLTWIGKRPVEEPYILTGQILTIIYFSYFLIN 292
Cdd:MTH00224 315 SLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIIS 366
CYTB MTH00033
cytochrome b; Provisional
 1-291 3.50e-96

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 288.37  E-value: 3.50e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705   1 NNGWILRTLHANGASMFFICIYLHVGRGIYYGSYL**HTWMIGT*ILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:MTH00033  71 NYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAI 150

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705  81 PYLGTNLVQWVWGGFAVDNATLYGFFTYHVIMPVIIAAMAAIHLFFLHHTGSNNPIGLNSNIEKIPFHPYFTFKDLITFV 160
Cdd:MTH00033 151 PSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFL 230

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705 161 FMSSLLIMLClINPY---MLGDPDNFVTANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKT 237
Cdd:MTH00033 231 ILFGVFVIIG-IEPRietLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRS 309

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 351650705 238 QFRGIQFYPMNQILFWIMVIIVFLLTWIGKRPV-EEPYILTGQILTIIYFSYFLI 291
Cdd:MTH00033 310 KIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLV 364
CYTB MTH00086
cytochrome b; Provisional
 1-291 1.74e-93

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 280.67  E-value: 1.74e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705   1 NNGWILRTLHANGASMFFICIYLHVGRGIYYGSYL**HTWMIGT*ILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:MTH00086  63 NFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVI 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705  81 PYLGTNLVQWVWGGFAVDNATLYGFFTYHVIMPVIIAAMAAIHLFFLHHTGSNNPIGLNSNIEKIPFHPYFTFKDLITFV 160
Cdd:MTH00086 143 PIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNII 222

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705 161 FMsSLLIMLCLINPYMLGDPDNFVTANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNktqFR 240
Cdd:MTH00086 223 FW-LVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVN---NY 298

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 351650705 241 GIQFYPMNQILFWIMVIIVFLLTWIGKRPVEEPYILTGQILTIIYFSYFLI 291
Cdd:MTH00086 299 TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILL 349
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
3-291 9.21e-86

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 262.03  E-value: 9.21e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705   3 GWILRTLHANGASMFFICIYLHVGRGIYYGSYL**H--TWMIGT*ILFLVMATAFMGYVLPW****FWGATVITNLLSAI 80
Cdd:COG1290   85 GWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAI 164

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705  81 PYLGTNLVQWVWGGFAVDNATLYGFFTYHV-IMPVIIAAMAAIHLFFLHHTGSNNPIG----LNSNIEKIPFHPYFTFKD 155
Cdd:COG1290  165 PVIGTWLVTWLFGGEFPGDATLNRFFALHVlLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKD 244

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705 156 LITFVFMssLLIMLCLINPYMLGDPDNFVTANPLVTPIHIQPEWYFLFAYAILRSIP--NKLGGVIALFLSISILMILPF 233
Cdd:COG1290  245 GFGFFVF--LGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPF 322

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 351650705 234 YNKTQFRGIQFYPMNQILFWIMVIIVFLLTWIGKRPveEPYILTGQILTIIYFSYFLI 291
Cdd:COG1290  323 LDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
CYTB MTH00046
cytochrome b; Validated
 4-284 1.16e-64

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 206.76  E-value: 1.16e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705   4 WILRTLHANGASMFFICIYLHVGRGIYYGSYL**HTWMIGT*ILFLVMATAFMGYVLPW****FWGATVITNLLSAIPYL 83
Cdd:MTH00046  68 WCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIV 147

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705  84 GTNLVQWVWGGFAVDNATLYGFFTYHVIMPVIIAAMAAIHLFFLHHTGSNNPIGLNSNI-EKIPFHPYFTFKDLITFVFM 162
Cdd:MTH00046 148 GSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVV 227

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705 163 SSLLIMLCLINPYMLGDPDNFVTANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIaLFLSISILMILPFYNKTQFRGI 242
Cdd:MTH00046 228 CSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVPTFNGSSVYSV 306

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 351650705 243 qfypMNQILFWIMVIIVFLLTWIGKRPVEEPYILTGQILTII 284
Cdd:MTH00046 307 ----WRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSVL 344
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-133 5.41e-47

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 156.37  E-value: 5.41e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705   1 NNGWILRTLHANGASMFFICIYLHVGRGIYYGSYL**H--TWMIGT*ILFLVMATAFMGYVLPW****FWGATVITNLLS 78
Cdd:cd00284   66 NFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKPRelTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFS 145

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 351650705  79 AIPYLGTNLVQWVWGGFAVDNATLYGFFTYHVIMPVIIAAMAAIHLFFLHHTGSN 133
Cdd:cd00284  146 AIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 134-280 2.67e-45

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 150.10  E-value: 2.67e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705 134 NPIGLNSNIEKIPFHPYFTFKDLITFVFMSSLLIMLCLINPYMLGDPDNFVTANPLVTPIHIQPEWYFLFAYAILRSIPN 213
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 351650705 214 KLGGVIALFLSISILMILPFYNKTQFRGiQFYPMNQILFWIMVIIVFLLTWIGKRPVEEPYILTGQI 280
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-131 2.53e-42

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 144.06  E-value: 2.53e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705    1 NNGWILRTLHANGASMFFICIYLHVGRGIYYGSYL**H--TWMIGT*ILFLVMATAFMGYVLPW****FWGATVITNLLS 78
Cdd:pfam00033  57 NFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLS 136

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 351650705   79 AIPYLGTNLVQWVWGGFAVDNATLYGFFTYHVIMPVIIAAMAAIHLFFLHHTG 131
Cdd:pfam00033 137 AIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
15-180 2.96e-41

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 140.45  E-value: 2.96e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705   15 SMFFICIYLHVGRGIYYGSYL**H--TWMIGT*ILFLVMATAFMGYVLPW****FWGATVITNLLSAIPYLGTNLVQWVW 92
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705   93 GGFAVDNATLYGFFTYHV-IMPVIIAAMAAIHLFFLHHTGSNNPIGLNSNIEKIPFHPYFTFKDLITFVFMSSLLIMLCL 171
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 351650705  172 INPYMLGDP 180
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
186-285 1.71e-40

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 136.07  E-value: 1.71e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705  186 ANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFRGIQFYPMNQILFWIMVIIVFLLTWI 265
Cdd:pfam00032   2 ANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGWL 81

                          90       100
                  ....*....|....*....|
gi 351650705  266 GKRPVEEPYILTGQILTIIY 285
Cdd:pfam00032  82 GKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 1-136 1.06e-17

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 79.76  E-value: 1.06e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705   1 NNGWILRTLHANGASMFFICIYLHVGRGIYYGSYL**H--TWMIGT*ILFLVMATAFMGYVLPW****FWGATVITNLLS 78
Cdd:PRK03735  85 AFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAE 164

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 351650705  79 AIPYLGTNLVQWVWGGFAVDNATLYGFFTYHV-IMPVIIAAMAAIHLFFLHHTGSNNPI 136
Cdd:PRK03735 165 AIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHVfFLPWALAVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 1-136 1.10e-12

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 65.90  E-value: 1.10e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705   1 NNGWILRTLHANGASMFFICIYLHVGRGIYYGSYL**H--TWMIGT*ILFLVMATAFMGYVLPW****FWGATVITNLLS 78
Cdd:CHL00070  77 NFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPE 156

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 351650705  79 AIPYLGTNLVQWVWGGFAVDNATLYGFFTYHV-IMPVIIAAMAAIHLFFLHHTGSNNPI 136
Cdd:CHL00070 157 AIPVIGSPLVELLRGSVSVGQSTLTRFYSLHTfVLPLLTAVFMLMHFLMIRKQGISGPL 215
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 164-233 1.61e-11

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 61.35  E-value: 1.61e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705 164 SLLIMLCLINPYMLGDPdnfvtANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPF 233
Cdd:COG5679   50 ALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPF 114
petD CHL00058
cytochrome b6/f complex subunit IV
 164-240 8.98e-11

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 59.24  E-value: 8.98e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 351650705 164 SLLIMLCLINPYMLGDPdnfvtANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFY-NKTQFR 240
Cdd:CHL00058  49 ACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQ 121
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 164-233 1.51e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 55.96  E-value: 1.51e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650705  164 SLLIMLCLINPYMLGDPdnfvtANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPF 233
Cdd:TIGR01156  49 ACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPF 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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