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Conserved domains on  [gi|355343536|gb|AER59452|]
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cytochrome b, partial (mitochondrion) [Pseudogmothela yonlii]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-198 4.04e-142

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 399.93  E-value: 4.04e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536   1 GASMFFICMYLHVGRGIYYSSYMYMKTWMIGNIILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVW 80
Cdd:MTH00156  76 GASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIW 155

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536  81 GGFAVDNATLNRFFTFHFVLPFGIAAMAAIHLFFLHQTGSNNPIGLNSNIEKIPFHPYFTFKDSITFLLATSLLIMLCLI 160
Cdd:MTH00156 156 GGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLI 235

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 355343536 161 NPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 198
Cdd:MTH00156 236 NPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRS 273
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-198 4.04e-142

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 399.93  E-value: 4.04e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536   1 GASMFFICMYLHVGRGIYYSSYMYMKTWMIGNIILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVW 80
Cdd:MTH00156  76 GASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIW 155

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536  81 GGFAVDNATLNRFFTFHFVLPFGIAAMAAIHLFFLHQTGSNNPIGLNSNIEKIPFHPYFTFKDSITFLLATSLLIMLCLI 160
Cdd:MTH00156 156 GGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLI 235

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 355343536 161 NPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 198
Cdd:MTH00156 236 NPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRS 273
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-198 8.73e-72

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 222.36  E-value: 8.73e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536   1 GASMFFICMYLHVGRGIYYSSYmymK-----TWMIGNIILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDL 75
Cdd:COG1290   95 GASLFFAAVYLHMFRGFFYGAY---KkprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWL 171

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536  76 VQWVWGGFAVDNATLNRFFTFH-FVLPFGIAAMAAIHLFFLHQTGSNNPIG----LNSNIEKIPFHPYFTFKDSITFLLa 150
Cdd:COG1290  172 VTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFV- 250

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 355343536 151 tSLLIMLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 198
Cdd:COG1290  251 -FLGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRA 297
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-121 5.30e-51

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 163.31  E-value: 5.30e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536   1 GASMFFICMYLHVGRGIYYSSYM--YMKTWMIGNIILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQW 78
Cdd:cd00284   78 GASMFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEW 157

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 355343536  79 VWGGFAVDNATLNRFFTFHFVLPFGIAAMAAIHLFFLHQTGSN 121
Cdd:cd00284  158 LWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-119 1.51e-47

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 154.08  E-value: 1.51e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536    1 GASMFFICMYLHVGRGIYYSSYMYM--KTWMIGNIILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQW 78
Cdd:pfam00033  69 GASMFFLMLYLHIFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEW 148

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 355343536   79 VWGGFAVDNATLNRFFTFHFVLPFGIAAMAAIHLFFLHQTG 119
Cdd:pfam00033 149 IWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-198 4.04e-142

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 399.93  E-value: 4.04e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536   1 GASMFFICMYLHVGRGIYYSSYMYMKTWMIGNIILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVW 80
Cdd:MTH00156  76 GASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIW 155

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536  81 GGFAVDNATLNRFFTFHFVLPFGIAAMAAIHLFFLHQTGSNNPIGLNSNIEKIPFHPYFTFKDSITFLLATSLLIMLCLI 160
Cdd:MTH00156 156 GGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLI 235

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 355343536 161 NPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 198
Cdd:MTH00156 236 NPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRS 273
CYTB MTH00119
cytochrome b; Provisional
 1-198 2.13e-126

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 361.14  E-value: 2.13e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536   1 GASMFFICMYLHVGRGIYYSSYMYMKTWMIGNIILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVW 80
Cdd:MTH00119  87 GASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIW 166

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536  81 GGFAVDNATLNRFFTFHFVLPFGIAAMAAIHLFFLHQTGSNNPIGLNSNIEKIPFHPYFTFKDSITFLLATSLLIMLCLI 160
Cdd:MTH00119 167 GGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALF 246

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 355343536 161 NPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 198
Cdd:MTH00119 247 SPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRS 284
CYTB MTH00145
cytochrome b; Provisional
 1-198 2.15e-123

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 353.44  E-value: 2.15e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536   1 GASMFFICMYLHVGRGIYYSSYMYMKTWMIGNIILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVW 80
Cdd:MTH00145  87 GASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVW 166

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536  81 GGFAVDNATLNRFFTFHFVLPFGIAAMAAIHLFFLHQTGSNNPIGLNSNIEKIPFHPYFTFKDSITFLLATSLLIMLCLI 160
Cdd:MTH00145 167 GGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLF 246

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 355343536 161 NPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 198
Cdd:MTH00145 247 FPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRS 284
CYTB MTH00074
cytochrome b; Provisional
 1-198 3.54e-123

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 352.83  E-value: 3.54e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536   1 GASMFFICMYLHVGRGIYYSSYMYMKTWMIGNIILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVW 80
Cdd:MTH00074  87 GASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIW 166

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536  81 GGFAVDNATLNRFFTFHFVLPFGIAAMAAIHLFFLHQTGSNNPIGLNSNIEKIPFHPYFTFKDSITFLLATSLLIMLCLI 160
Cdd:MTH00074 167 GGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLF 246

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 355343536 161 NPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 198
Cdd:MTH00074 247 SPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRS 284
CYTB MTH00100
cytochrome b; Provisional
 1-198 3.90e-123

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 352.79  E-value: 3.90e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536   1 GASMFFICMYLHVGRGIYYSSYMYMKTWMIGNIILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVW 80
Cdd:MTH00100  86 GASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIW 165

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536  81 GGFAVDNATLNRFFTFHFVLPFGIAAMAAIHLFFLHQTGSNNPIGLNSNIEKIPFHPYFTFKDSITFLLATSLLIMLCLI 160
Cdd:MTH00100 166 GGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLF 245

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 355343536 161 NPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 198
Cdd:MTH00100 246 SPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 283
CYTB MTH00191
cytochrome b; Provisional
 1-198 1.75e-122

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 350.37  E-value: 1.75e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536   1 GASMFFICMYLHVGRGIYYSSYMYMKTWMIGNIILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVW 80
Cdd:MTH00191  83 GASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLW 162

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536  81 GGFAVDNATLNRFFTFHFVLPFGIAAMAAIHLFFLHQTGSNNPIGLNSNIEKIPFHPYFTFKDSITFLLATSLLIMLCLI 160
Cdd:MTH00191 163 GGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLF 242

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 355343536 161 NPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 198
Cdd:MTH00191 243 SPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRS 280
CYTB MTH00131
cytochrome b; Provisional
 1-198 2.80e-120

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 345.48  E-value: 2.80e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536   1 GASMFFICMYLHVGRGIYYSSYMYMKTWMIGNIILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVW 80
Cdd:MTH00131  86 GASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIW 165

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536  81 GGFAVDNATLNRFFTFHFVLPFGIAAMAAIHLFFLHQTGSNNPIGLNSNIEKIPFHPYFTFKDSITFLLATSLLIMLCLI 160
Cdd:MTH00131 166 GGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALF 245

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 355343536 161 NPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 198
Cdd:MTH00131 246 SPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRS 283
CYTB MTH00016
cytochrome b; Validated
 1-198 1.38e-115

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 333.57  E-value: 1.38e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536   1 GASMFFICMYLHVGRGIYYSSYMYMKTWMIGNIILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVW 80
Cdd:MTH00016  87 GASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLW 166

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536  81 GGFAVDNATLNRFFTFHFVLPFGIAAMAAIHLFFLHQTGSNNPIGLNSNIEKIPFHPYFTFKDSITFLLATSLLIMLCLI 160
Cdd:MTH00016 167 GGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLL 246

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 355343536 161 NPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 198
Cdd:MTH00016 247 WPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRS 284
CYTB MTH00034
cytochrome b; Validated
 1-198 3.75e-111

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 322.43  E-value: 3.75e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536   1 GASMFFICMYLHVGRGIYYSSYMYMKTWMIGNIILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVW 80
Cdd:MTH00034  86 GASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIW 165

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536  81 GGFAVDNATLNRFFTFHFVLPFGIAAMAAIHLFFLHQTGSNNPIGLNSNIEKIPFHPYFTFKDSITFLLATSLLIMLCLI 160
Cdd:MTH00034 166 GGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALL 245

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 355343536 161 NPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 198
Cdd:MTH00034 246 FPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRS 283
CYTB MTH00224
cytochrome b; Provisional
 1-198 3.43e-100

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 294.52  E-value: 3.43e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536   1 GASMFFICMYLHVGRGIYYSSYMYMKTWMIGNIILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVW 80
Cdd:MTH00224  87 GASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIW 166

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536  81 GGFAVDNATLNRFFTFHFVLPFGIAAMAAIHLFFLHQTGSNNPIGLNSNIEKIPFHPYFTFKDSITFLLATSLLIMLCLI 160
Cdd:MTH00224 167 GGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLF 246

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 355343536 161 NPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 198
Cdd:MTH00224 247 EPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRS 284
CYTB MTH00022
cytochrome b; Validated
 1-198 3.82e-97

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 286.60  E-value: 3.82e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536   1 GASMFFICMYLHVGRGIYYSSYMYMKTWMIGNIILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVW 80
Cdd:MTH00022  85 GASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVW 164

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536  81 GGFAVDNATLNRFFTFHFVLPFGIAAMAAIHLFFLHQTGSNNPIGLNSNIEKIPFHPYFTFKDSITFLLATSLLIMLCLI 160
Cdd:MTH00022 165 GGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYF 244

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 355343536 161 NPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 198
Cdd:MTH00022 245 APNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRS 282
CYTB MTH00053
cytochrome b; Provisional
 1-198 8.14e-95

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 280.82  E-value: 8.14e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536   1 GASMFFICMYLHVGRGIYYSSYMYMKTWMIGNIILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVW 80
Cdd:MTH00053  87 GASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVW 166

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536  81 GGFAVDNATLNRFFTFHFVLPFGIAAMAAIHLFFLHQTGSNNPIGLNSNIEKIPFHPYFTFKDSITFLLATSLLIMLCLI 160
Cdd:MTH00053 167 GGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFL 246

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 355343536 161 NPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 198
Cdd:MTH00053 247 FPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRS 284
CYTB MTH00086
cytochrome b; Provisional
 1-198 4.74e-75

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 229.44  E-value: 4.74e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536   1 GASMFFICMYLHVGRGIYYSSYMYMKTWMIGNIILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVW 80
Cdd:MTH00086  75 GASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIW 154

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536  81 GGFAVDNATLNRFFTFHFVLPFGIAAMAAIHLFFLHQTGSNNPIGLNSNIEKIPFHPYFTFKDSITFLLATsLLIMLCLI 160
Cdd:MTH00086 155 GGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWL-VFIIFSLF 233

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 355343536 161 NPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 198
Cdd:MTH00086 234 YPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRA 271
CYTB MTH00033
cytochrome b; Provisional
 1-198 7.00e-72

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 222.51  E-value: 7.00e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536   1 GASMFFICMYLHVGRGIYYSSYMYMKTWMIGNIILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVW 80
Cdd:MTH00033  83 GASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIW 162

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536  81 GGFAVDNATLNRFFTFHFVLPFGIAAMAAIHLFFLHQTGSNNPIGLNSNIEKIPFHPYFTFKDSITFLLATSLLIMLClI 160
Cdd:MTH00033 163 GGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIG-I 241

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 355343536 161 NPY---MLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 198
Cdd:MTH00033 242 EPRietLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRS 282
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-198 8.73e-72

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 222.36  E-value: 8.73e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536   1 GASMFFICMYLHVGRGIYYSSYmymK-----TWMIGNIILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDL 75
Cdd:COG1290   95 GASLFFAAVYLHMFRGFFYGAY---KkprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWL 171

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536  76 VQWVWGGFAVDNATLNRFFTFH-FVLPFGIAAMAAIHLFFLHQTGSNNPIG----LNSNIEKIPFHPYFTFKDSITFLLa 150
Cdd:COG1290  172 VTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFV- 250

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 355343536 151 tSLLIMLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 198
Cdd:COG1290  251 -FLGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRA 297
CYTB MTH00046
cytochrome b; Validated
 1-198 3.06e-58

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 186.34  E-value: 3.06e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536   1 GASMFFICMYLHVGRGIYYSSYMYMKTWMIGNIILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVW 80
Cdd:MTH00046  77 GVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIV 156

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536  81 GGFAVDNATLNRFFTFHFVLPFGIAAMAAIHLFFLHQTGSNNPIGLNSNI-EKIPFHPYFTFKDSITFLLATSLLIMLCL 159
Cdd:MTH00046 157 GGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLF 236

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 355343536 160 INPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 198
Cdd:MTH00046 237 VSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRS 275
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-121 5.30e-51

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 163.31  E-value: 5.30e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536   1 GASMFFICMYLHVGRGIYYSSYM--YMKTWMIGNIILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQW 78
Cdd:cd00284   78 GASMFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEW 157

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 355343536  79 VWGGFAVDNATLNRFFTFHFVLPFGIAAMAAIHLFFLHQTGSN 121
Cdd:cd00284  158 LWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-119 1.51e-47

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 154.08  E-value: 1.51e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536    1 GASMFFICMYLHVGRGIYYSSYMYM--KTWMIGNIILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQW 78
Cdd:pfam00033  69 GASMFFLMLYLHIFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEW 148

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 355343536   79 VWGGFAVDNATLNRFFTFHFVLPFGIAAMAAIHLFFLHQTG 119
Cdd:pfam00033 149 IWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
3-168 8.93e-47

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 151.24  E-value: 8.93e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536    3 SMFFICMYLHVGRGIYYSSYMYMK--TWMIGNIILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVW 80
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536   81 GGFAVDNATLNRFFTFHF-VLPFGIAAMAAIHLFFLHQTGSNNPIGLNSNIEKIPFHPYFTFKDSITFLLATSLLIMLCL 159
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 355343536  160 INPYMLGDP 168
Cdd:pfam13631 161 INPIWLGGP 169
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 122-198 6.18e-24

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 91.94  E-value: 6.18e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 355343536 122 NPIGLNSNIEKIPFHPYFTFKDSITFLLATSLLIMLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 198
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRA 77
PRK03735 PRK03735
cytochrome b6; Provisional
 1-124 3.67e-19

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 81.68  E-value: 3.67e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536   1 GASMFFICMYLHVGRGIYYSSYMYMK--TWMIGNIILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQW 78
Cdd:PRK03735  97 GASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTL 176

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 355343536  79 VWGGFAVDNATLNRFFTFH-FVLPFGIAAMAAIHLFFLHQTGSNNPI 124
Cdd:PRK03735 177 LRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 2-124 2.52e-14

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 68.59  E-value: 2.52e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343536   2 ASMFFICMYLHVGRgiYYSSYMYMK----TWMIGNIILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQ 77
Cdd:CHL00070  90 ASMMVLMMILHVFR--VYLTGGFKKprelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVE 167

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 355343536  78 WVWGGFAVDNATLNRFFTFH-FVLPFGIAAMAAIHLFFLHQTGSNNPI 124
Cdd:CHL00070 168 LLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
173-198 2.24e-11

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 57.87  E-value: 2.24e-11
                          10        20
                  ....*....|....*....|....*.
gi 355343536  173 PANPLVTPVHIQPEWYFLFAYAILRS 198
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRS 26
petD CHL00058
cytochrome b6/f complex subunit IV
 152-197 1.11e-04

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 40.76  E-value: 1.11e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 355343536 152 SLLIMLCLINPYMLGDPdnfvpANPLVTPVHIQPEWYFLFAYAILR 197
Cdd:CHL00058  49 ACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILR 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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