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Conserved domains on  [gi|355343554|gb|AER59461|]
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cytochrome b, partial (mitochondrion) [Stenohippus mundus]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-200 4.34e-145

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 407.63  E-value: 4.34e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554   1 ANGASMFFICIYLHVGRGIYYGSYMYMHTWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQW 80
Cdd:MTH00156  74 ANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQW 153

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554  81 VWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGVNGNIEKIPFHPYFTFKDSITFVMMTSLLIMLC 160
Cdd:MTH00156 154 IWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLT 233

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 355343554 161 LINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 200
Cdd:MTH00156 234 LINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRS 273
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-200 4.34e-145

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 407.63  E-value: 4.34e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554   1 ANGASMFFICIYLHVGRGIYYGSYMYMHTWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQW 80
Cdd:MTH00156  74 ANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQW 153

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554  81 VWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGVNGNIEKIPFHPYFTFKDSITFVMMTSLLIMLC 160
Cdd:MTH00156 154 IWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLT 233

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 355343554 161 LINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 200
Cdd:MTH00156 234 LINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRS 273
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-200 1.22e-75

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 232.37  E-value: 1.22e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554   1 ANGASMFFICIYLHVGRGIYYGSYMYMH--TWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLV 78
Cdd:COG1290   93 HWGASLFFAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLV 172

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554  79 QWVWGGFAVDNATLNRFFTFH-FVLPFMIAAMAAIHLFFLHQTGSNNPIGVNGNIEK----IPFHPYFTFKDSITFVMMt 153
Cdd:COG1290  173 TWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHPYYTVKDGFGFFVF- 251

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 355343554 154 sLLIMLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 200
Cdd:COG1290  252 -LGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRA 297
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-123 2.25e-52

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 166.77  E-value: 2.25e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554   1 ANGASMFFICIYLHVGRGIYYGSYMYMH--TWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLV 78
Cdd:cd00284   76 ANGASMFFLMLYLHIFRGLYYGSYKKPRelTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLV 155

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 355343554  79 QWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSN 123
Cdd:cd00284  156 EWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-121 2.49e-49

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 158.70  E-value: 2.49e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554    1 ANGASMFFICIYLHVGRGIYYGSYMYMH--TWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLV 78
Cdd:pfam00033  67 ANGASMFFLMLYLHIFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLV 146

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 355343554   79 QWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTG 121
Cdd:pfam00033 147 EWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-200 4.34e-145

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 407.63  E-value: 4.34e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554   1 ANGASMFFICIYLHVGRGIYYGSYMYMHTWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQW 80
Cdd:MTH00156  74 ANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQW 153

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554  81 VWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGVNGNIEKIPFHPYFTFKDSITFVMMTSLLIMLC 160
Cdd:MTH00156 154 IWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLT 233

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 355343554 161 LINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 200
Cdd:MTH00156 234 LINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRS 273
CYTB MTH00119
cytochrome b; Provisional
 1-200 8.01e-130

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 369.62  E-value: 8.01e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554   1 ANGASMFFICIYLHVGRGIYYGSYMYMHTWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQW 80
Cdd:MTH00119  85 ANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEW 164

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554  81 VWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGVNGNIEKIPFHPYFTFKDSITFVMMTSLLIMLC 160
Cdd:MTH00119 165 IWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLA 244

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 355343554 161 LINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 200
Cdd:MTH00119 245 LFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRS 284
CYTB MTH00145
cytochrome b; Provisional
 1-200 9.48e-128

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 364.61  E-value: 9.48e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554   1 ANGASMFFICIYLHVGRGIYYGSYMYMHTWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQW 80
Cdd:MTH00145  85 ANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEW 164

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554  81 VWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGVNGNIEKIPFHPYFTFKDSITFVMMTSLLIMLC 160
Cdd:MTH00145 165 VWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLV 244

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 355343554 161 LINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 200
Cdd:MTH00145 245 LFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRS 284
CYTB MTH00074
cytochrome b; Provisional
 1-200 1.63e-127

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 364.00  E-value: 1.63e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554   1 ANGASMFFICIYLHVGRGIYYGSYMYMHTWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQW 80
Cdd:MTH00074  85 ANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQW 164

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554  81 VWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGVNGNIEKIPFHPYFTFKDSITFVMMTSLLIMLC 160
Cdd:MTH00074 165 IWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLS 244

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 355343554 161 LINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 200
Cdd:MTH00074 245 LFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRS 284
CYTB MTH00191
cytochrome b; Provisional
 1-200 3.18e-127

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 362.70  E-value: 3.18e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554   1 ANGASMFFICIYLHVGRGIYYGSYMYMHTWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQW 80
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554  81 VWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGVNGNIEKIPFHPYFTFKDSITFVMMTSLLIMLC 160
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 355343554 161 LINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 200
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRS 280
CYTB MTH00100
cytochrome b; Provisional
 1-200 5.94e-126

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 360.11  E-value: 5.94e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554   1 ANGASMFFICIYLHVGRGIYYGSYMYMHTWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQW 80
Cdd:MTH00100  84 ANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEW 163

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554  81 VWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGVNGNIEKIPFHPYFTFKDSITFVMMTSLLIMLC 160
Cdd:MTH00100 164 IWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLV 243

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 355343554 161 LINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 200
Cdd:MTH00100 244 LFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 283
CYTB MTH00131
cytochrome b; Provisional
 1-200 6.30e-125

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 357.43  E-value: 6.30e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554   1 ANGASMFFICIYLHVGRGIYYGSYMYMHTWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQW 80
Cdd:MTH00131  84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQW 163

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554  81 VWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGVNGNIEKIPFHPYFTFKDSITFVMMTSLLIMLC 160
Cdd:MTH00131 164 IWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLA 243

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 355343554 161 LINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 200
Cdd:MTH00131 244 LFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRS 283
CYTB MTH00016
cytochrome b; Validated
 1-200 2.04e-119

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 343.20  E-value: 2.04e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554   1 ANGASMFFICIYLHVGRGIYYGSYMYMHTWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQW 80
Cdd:MTH00016  85 ANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQW 164

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554  81 VWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGVNGNIEKIPFHPYFTFKDSITFVMMTSLLIMLC 160
Cdd:MTH00016 165 LWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVV 244

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 355343554 161 LINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 200
Cdd:MTH00016 245 LLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRS 284
CYTB MTH00034
cytochrome b; Validated
 1-200 8.15e-114

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 328.97  E-value: 8.15e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554   1 ANGASMFFICIYLHVGRGIYYGSYMYMHTWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQW 80
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQW 163

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554  81 VWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGVNGNIEKIPFHPYFTFKDSITFVMMTSLLIMLC 160
Cdd:MTH00034 164 IWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLA 243

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 355343554 161 LINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 200
Cdd:MTH00034 244 LLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRS 283
CYTB MTH00022
cytochrome b; Validated
 1-200 4.90e-102

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 299.31  E-value: 4.90e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554   1 ANGASMFFICIYLHVGRGIYYGSYMYMHTWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQW 80
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQW 162

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554  81 VWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGVNGNIEKIPFHPYFTFKDSITFVMMTSLLIMLC 160
Cdd:MTH00022 163 VWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIV 242

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 355343554 161 LINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 200
Cdd:MTH00022 243 YFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRS 282
CYTB MTH00224
cytochrome b; Provisional
 1-200 1.10e-101

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 298.37  E-value: 1.10e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554   1 ANGASMFFICIYLHVGRGIYYGSYMYMHTWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQW 80
Cdd:MTH00224  85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEW 164

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554  81 VWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGVNGNIEKIPFHPYFTFKDSITFVMMTSLLIMLC 160
Cdd:MTH00224 165 IWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMV 244

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 355343554 161 LINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 200
Cdd:MTH00224 245 LFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRS 284
CYTB MTH00053
cytochrome b; Provisional
 1-200 1.23e-98

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 290.45  E-value: 1.23e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554   1 ANGASMFFICIYLHVGRGIYYGSYMYMHTWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQW 80
Cdd:MTH00053  85 ANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRW 164

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554  81 VWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGVNGNIEKIPFHPYFTFKDSITFVMMTSLLIMLC 160
Cdd:MTH00053 165 VWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIV 244

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 355343554 161 LINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 200
Cdd:MTH00053 245 FLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRS 284
CYTB MTH00086
cytochrome b; Provisional
 2-200 5.65e-76

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 232.14  E-value: 5.65e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554   2 NGASMFFICIYLHVGRGIYYGSYMYMHTWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWV 81
Cdd:MTH00086  74 NGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWI 153

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554  82 WGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGVNGNIEKIPFHPYFTFKDSITFVMMTsLLIMLCL 161
Cdd:MTH00086 154 WGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWL-VFIIFSL 232

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 355343554 162 INPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 200
Cdd:MTH00086 233 FYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRA 271
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-200 1.22e-75

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 232.37  E-value: 1.22e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554   1 ANGASMFFICIYLHVGRGIYYGSYMYMH--TWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLV 78
Cdd:COG1290   93 HWGASLFFAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLV 172

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554  79 QWVWGGFAVDNATLNRFFTFH-FVLPFMIAAMAAIHLFFLHQTGSNNPIGVNGNIEK----IPFHPYFTFKDSITFVMMt 153
Cdd:COG1290  173 TWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHPYYTVKDGFGFFVF- 251

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 355343554 154 sLLIMLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 200
Cdd:COG1290  252 -LGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRA 297
CYTB MTH00033
cytochrome b; Provisional
 1-200 5.12e-75

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 230.59  E-value: 5.12e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554   1 ANGASMFFICIYLHVGRGIYYGSYMYMHTWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQW 80
Cdd:MTH00033  81 ANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEW 160

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554  81 VWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGVNGNIEKIPFHPYFTFKDSITFVMMTSLLIMLC 160
Cdd:MTH00033 161 IWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIG 240

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 355343554 161 lINPY---MLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 200
Cdd:MTH00033 241 -IEPRietLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRS 282
CYTB MTH00046
cytochrome b; Validated
 3-200 2.75e-59

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 189.42  E-value: 2.75e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554   3 GASMFFICIYLHVGRGIYYGSYMYMHTWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVW 82
Cdd:MTH00046  77 GVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIV 156

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554  83 GGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGVNGNI-EKIPFHPYFTFKDSITFVMMTSLLIMLCL 161
Cdd:MTH00046 157 GGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLF 236

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 355343554 162 INPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 200
Cdd:MTH00046 237 VSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRS 275
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-123 2.25e-52

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 166.77  E-value: 2.25e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554   1 ANGASMFFICIYLHVGRGIYYGSYMYMH--TWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLV 78
Cdd:cd00284   76 ANGASMFFLMLYLHIFRGLYYGSYKKPRelTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLV 155

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 355343554  79 QWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSN 123
Cdd:cd00284  156 EWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-121 2.49e-49

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 158.70  E-value: 2.49e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554    1 ANGASMFFICIYLHVGRGIYYGSYMYMH--TWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLV 78
Cdd:pfam00033  67 ANGASMFFLMLYLHIFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLV 146

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 355343554   79 QWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTG 121
Cdd:pfam00033 147 EWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
5-170 1.00e-48

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 156.25  E-value: 1.00e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554    5 SMFFICIYLHVGRGIYYGSYMYMH--TWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVW 82
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554   83 GGFAVDNATLNRFFTFHF-VLPFMIAAMAAIHLFFLHQTGSNNPIGVNGNIEKIPFHPYFTFKDSITFVMMTSLLIMLCL 161
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 355343554  162 INPYMLGDP 170
Cdd:pfam13631 161 INPIWLGGP 169
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 124-200 3.58e-24

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 92.71  E-value: 3.58e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 355343554 124 NPIGVNGNIEKIPFHPYFTFKDSITFVMMTSLLIMLCLINPYMLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 200
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRA 77
PRK03735 PRK03735
cytochrome b6; Provisional
 3-126 3.30e-19

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 81.68  E-value: 3.30e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554   3 GASMFFICIYLHVGRGIYYGSYMYMH--TWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQW 80
Cdd:PRK03735  97 GASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTL 176

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 355343554  81 VWGGFAVDNATLNRFFTFH-FVLPFMIAAMAAIHLFFLHQTGSNNPI 126
Cdd:PRK03735 177 LRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 4-126 1.90e-14

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 68.98  E-value: 1.90e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355343554   4 ASMFFICIYLHVGRGIYYGSYMYMH--TWMIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWV 81
Cdd:CHL00070  90 ASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELL 169

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 355343554  82 WGGFAVDNATLNRFFTFH-FVLPFMIAAMAAIHLFFLHQTGSNNPI 126
Cdd:CHL00070 170 RGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
175-200 2.34e-11

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 57.87  E-value: 2.34e-11
                          10        20
                  ....*....|....*....|....*.
gi 355343554  175 PANPLVTPVHIQPEWYFLFAYAILRS 200
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRS 26
petD CHL00058
cytochrome b6/f complex subunit IV
 154-199 1.13e-04

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 40.76  E-value: 1.13e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 355343554 154 SLLIMLCLINPYMLGDPdnfvpANPLVTPVHIQPEWYFLFAYAILR 199
Cdd:CHL00058  49 ACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILR 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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