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Conserved domains on  [gi|356714161|gb|AET36909|]
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glycoprotein E, partial [Suid alphaherpesvirus 1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Herpes_gE_N super family cl46909
Alphaherpesvirus glycoprotein E N-terminal; Glycoprotein E (gE) of Alphaherpesvirus forms a ...
 43-94 4.87e-10

Alphaherpesvirus glycoprotein E N-terminal; Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI) (pfam01688), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation. This entry represents the N-terminal domain of gE, which interacts with gI.


The actual alignment was detected with superfamily member PHA03283:

Pssm-ID: 481249  Cd Length: 542  Bit Score: 54.18  E-value: 4.87e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 356714161  43 RRAGFGSALASLREAPPAHLVNVSEGANFTLDARGG------GAVVAGIWTFL--PVRGC 94
Cdd:PHA03283   7 ARALAFFALITVLDAWGVHQVELSEGAWAMIDGRGVltptntTTRVTKAWTFLetPPGCA 66
 
Name Accession Description Interval E-value
PHA03283 PHA03283
envelope glycoprotein E; Provisional
 43-94 4.87e-10

envelope glycoprotein E; Provisional


Pssm-ID: 223032  Cd Length: 542  Bit Score: 54.18  E-value: 4.87e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 356714161  43 RRAGFGSALASLREAPPAHLVNVSEGANFTLDARGG------GAVVAGIWTFL--PVRGC 94
Cdd:PHA03283   7 ARALAFFALITVLDAWGVHQVELSEGAWAMIDGRGVltptntTTRVTKAWTFLetPPGCA 66
 
Name Accession Description Interval E-value
PHA03283 PHA03283
envelope glycoprotein E; Provisional
 43-94 4.87e-10

envelope glycoprotein E; Provisional


Pssm-ID: 223032  Cd Length: 542  Bit Score: 54.18  E-value: 4.87e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 356714161  43 RRAGFGSALASLREAPPAHLVNVSEGANFTLDARGG------GAVVAGIWTFL--PVRGC 94
Cdd:PHA03283   7 ARALAFFALITVLDAWGVHQVELSEGAWAMIDGRGVltptntTTRVTKAWTFLetPPGCA 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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