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Conserved domains on  [gi|357576084|gb|AET85303|]
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cytochrome b, partial (mitochondrion) [Lophuromys sikapusi]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-282 0e+00

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 600.09  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084   1 PLIKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIVTGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGAS 80
Cdd:MTH00100   9 PLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGAS 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084  81 MFFICLFLHVGRGIYYGSYTFTETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGF 160
Cdd:MTH00100  89 MFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGF 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084 161 SVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGLDPNADKIPFHPYYTIKDFLGILLLIFFLLSLVLFSPD 240
Cdd:MTH00100 169 SVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPD 248

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 357576084 241 LLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGG 282
Cdd:MTH00100 249 LLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGG 290
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-282 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 600.09  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084   1 PLIKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIVTGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGAS 80
Cdd:MTH00100   9 PLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGAS 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084  81 MFFICLFLHVGRGIYYGSYTFTETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGF 160
Cdd:MTH00100  89 MFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGF 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084 161 SVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGLDPNADKIPFHPYYTIKDFLGILLLIFFLLSLVLFSPD 240
Cdd:MTH00100 169 SVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPD 248

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 357576084 241 LLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGG 282
Cdd:MTH00100 249 LLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGG 290
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
3-282 2.07e-112

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 329.44  E-value: 2.07e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084   3 IKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIVTGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGASMF 82
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084  83 FICLFLHVGRGIYYGSYTFTE--TWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGF 160
Cdd:COG1290  100 FAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGE 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084 161 SVDKATLTRFFAFH-FILPFIIAALAMVHLLFLHETGSNNPTGLD----PNADKIPFHPYYTIKDFLGILLLIFFLLSLV 235
Cdd:COG1290  180 FPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPErkktEKVDGVPFHPYYTVKDGFGFFVFLGVFALLA 259

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 357576084 236 LFSPDllGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGG 282
Cdd:COG1290  260 FFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGG 306
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-198 3.92e-101

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 293.89  E-value: 3.92e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084   1 PLIKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIVTGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGAS 80
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084  81 MFFICLFLHVGRGIYYGSY--TFTETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWG 158
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 357576084 159 GFSVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSN 198
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
10-196 4.04e-92

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 270.41  E-value: 4.04e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084   10 FIDLPAPSNISSWWNFGSLLGVCLIIQIVTGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGASMFFICLFLH 89
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084   90 VGRGIYYG--SYTFTETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATL 167
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 357576084  168 TRFFAFHFILPFIIAALAMVHLLFLHETG 196
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 250-282 5.03e-06

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 45.56  E-value: 5.03e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 357576084  250 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGG 282
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLG 97
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-282 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 600.09  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084   1 PLIKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIVTGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGAS 80
Cdd:MTH00100   9 PLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGAS 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084  81 MFFICLFLHVGRGIYYGSYTFTETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGF 160
Cdd:MTH00100  89 MFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGF 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084 161 SVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGLDPNADKIPFHPYYTIKDFLGILLLIFFLLSLVLFSPD 240
Cdd:MTH00100 169 SVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPD 248

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 357576084 241 LLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGG 282
Cdd:MTH00100 249 LLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGG 290
CYTB MTH00119
cytochrome b; Provisional
 1-282 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 541.41  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084   1 PLIKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIVTGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGAS 80
Cdd:MTH00119  10 PLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGAS 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084  81 MFFICLFLHVGRGIYYGSYTFTETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGF 160
Cdd:MTH00119  90 MFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGF 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084 161 SVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGLDPNADKIPFHPYYTIKDFLGILLLIFFLLSLVLFSPD 240
Cdd:MTH00119 170 SVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPN 249

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 357576084 241 LLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGG 282
Cdd:MTH00119 250 LLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGG 291
CYTB MTH00074
cytochrome b; Provisional
 1-282 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 531.56  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084   1 PLIKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIVTGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGAS 80
Cdd:MTH00074  10 PLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGAS 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084  81 MFFICLFLHVGRGIYYGSYTFTETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGF 160
Cdd:MTH00074  90 FFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGF 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084 161 SVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGLDPNADKIPFHPYYTIKDFLGILLLIFFLLSLVLFSPD 240
Cdd:MTH00074 170 SVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPN 249

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 357576084 241 LLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGG 282
Cdd:MTH00074 250 LLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGG 291
CYTB MTH00131
cytochrome b; Provisional
 1-282 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 530.77  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084   1 PLIKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIVTGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGAS 80
Cdd:MTH00131   9 PLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGAS 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084  81 MFFICLFLHVGRGIYYGSYTFTETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGF 160
Cdd:MTH00131  89 FFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGF 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084 161 SVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGLDPNADKIPFHPYYTIKDFLGILLLIFFLLSLVLFSPD 240
Cdd:MTH00131 169 SVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPN 248

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 357576084 241 LLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGG 282
Cdd:MTH00131 249 LLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGG 290
CYTB MTH00156
cytochrome b; Provisional
 3-282 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 530.51  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084   3 IKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIVTGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGASMF 82
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084  83 FICLFLHVGRGIYYGSYTFTETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSV 162
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084 163 DKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGLDPNADKIPFHPYYTIKDFLGILLLIFFLLSLVLFSPDLL 242
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 357576084 243 GDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGG 282
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGG 280
CYTB MTH00191
cytochrome b; Provisional
 1-282 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 524.86  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084   1 PLIKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIVTGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGAS 80
Cdd:MTH00191   6 PLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGAS 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084  81 MFFICLFLHVGRGIYYGSYTFTETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGF 160
Cdd:MTH00191  86 FFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGF 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084 161 SVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGLDPNADKIPFHPYYTIKDFLGILLLIFFLLSLVLFSPD 240
Cdd:MTH00191 166 SVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPN 245

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 357576084 241 LLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGG 282
Cdd:MTH00191 246 LLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGG 287
CYTB MTH00145
cytochrome b; Provisional
 1-282 1.57e-178

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 496.74  E-value: 1.57e-178
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084   1 PLIKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIVTGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGAS 80
Cdd:MTH00145  10 PVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGAS 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084  81 MFFICLFLHVGRGIYYGSYTFTETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGF 160
Cdd:MTH00145  90 FFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGF 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084 161 SVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGLDPNADKIPFHPYYTIKDFLGILLLIFFLLSLVLFSPD 240
Cdd:MTH00145 170 SVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPN 249

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 357576084 241 LLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGG 282
Cdd:MTH00145 250 LLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGG 291
CYTB MTH00034
cytochrome b; Validated
 1-282 3.58e-171

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 478.05  E-value: 3.58e-171
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084   1 PLIKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIVTGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGAS 80
Cdd:MTH00034   9 PLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGAS 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084  81 MFFICLFLHVGRGIYYGSYTFTETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGF 160
Cdd:MTH00034  89 LFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGF 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084 161 SVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGLDPNADKIPFHPYYTIKDFLGILLLIFFLLSLVLFSPD 240
Cdd:MTH00034 169 SVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPT 248

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 357576084 241 LLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGG 282
Cdd:MTH00034 249 ALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGG 290
CYTB MTH00016
cytochrome b; Validated
 1-282 7.34e-171

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 477.25  E-value: 7.34e-171
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084   1 PLIKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIVTGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGAS 80
Cdd:MTH00016  10 PLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGAS 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084  81 MFFICLFLHVGRGIYYGSYTFTETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGF 160
Cdd:MTH00016  90 FFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGF 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084 161 SVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGLDPNADKIPFHPYYTIKDFLGILLLIFFLLSLVLFSPD 240
Cdd:MTH00016 170 SVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPN 249

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 357576084 241 LLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGG 282
Cdd:MTH00016 250 ILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGG 291
CYTB MTH00022
cytochrome b; Validated
 1-282 2.36e-147

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 417.95  E-value: 2.36e-147
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084   1 PLIKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIVTGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGAS 80
Cdd:MTH00022   8 PLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGAS 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084  81 MFFICLFLHVGRGIYYGSYTFTETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGF 160
Cdd:MTH00022  88 LFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGF 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084 161 SVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGLDPNADKIPFHPYYTIKDFLGILLLIFFLLSLVLFSPD 240
Cdd:MTH00022 168 SVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPN 247

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 357576084 241 LLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGG 282
Cdd:MTH00022 248 LLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGG 289
CYTB MTH00224
cytochrome b; Provisional
 1-282 2.73e-146

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 415.09  E-value: 2.73e-146
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084   1 PLIKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIVTGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGAS 80
Cdd:MTH00224  10 PAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGAS 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084  81 MFFICLFLHVGRGIYYGSYTFTETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGF 160
Cdd:MTH00224  90 MFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGF 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084 161 SVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGLDPNADKIPFHPYYTIKDFLGILLLIFFLLSLVLFSPD 240
Cdd:MTH00224 170 AVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPN 249

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 357576084 241 LLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGG 282
Cdd:MTH00224 250 LFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGG 291
CYTB MTH00053
cytochrome b; Provisional
 1-282 4.85e-144

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 409.48  E-value: 4.85e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084   1 PLIKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIVTGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGAS 80
Cdd:MTH00053  10 PVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGAS 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084  81 MFFICLFLHVGRGIYYGSYTFTETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGF 160
Cdd:MTH00053  90 MFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGF 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084 161 SVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGLDPNADKIPFHPYYTIKDFLGILLLIFFLLSLVLFSPD 240
Cdd:MTH00053 170 SVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPY 249

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 357576084 241 LLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGG 282
Cdd:MTH00053 250 SLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGG 291
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
3-282 2.07e-112

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 329.44  E-value: 2.07e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084   3 IKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIVTGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGASMF 82
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084  83 FICLFLHVGRGIYYGSYTFTE--TWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGF 160
Cdd:COG1290  100 FAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGE 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084 161 SVDKATLTRFFAFH-FILPFIIAALAMVHLLFLHETGSNNPTGLD----PNADKIPFHPYYTIKDFLGILLLIFFLLSLV 235
Cdd:COG1290  180 FPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPErkktEKVDGVPFHPYYTVKDGFGFFVFLGVFALLA 259

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 357576084 236 LFSPDllGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGG 282
Cdd:COG1290  260 FFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGG 306
CYTB MTH00033
cytochrome b; Provisional
 11-282 6.55e-112

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 328.05  E-value: 6.55e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084  11 IDLPAPSNISSWWNFGSLLGVCLIIQIVTGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGASMFFICLFLHV 90
Cdd:MTH00033  16 IDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHI 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084  91 GRGIYYGSYTFTETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRF 170
Cdd:MTH00033  96 GRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRF 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084 171 FAFHFILPFIIAALAMVHLLFLHETGSNNPTGLDPNADKIPFHPYYTIKDFLGILLLIFFLLSLVLF--SPDLLGDPDNY 248
Cdd:MTH00033 176 FSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEprIETLLQDPENF 255

                        250       260       270
                 ....*....|....*....|....*....|....
gi 357576084 249 TPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGG 282
Cdd:MTH00033 256 IQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGG 289
CYTB MTH00086
cytochrome b; Provisional
 4-282 4.37e-107

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 314.57  E-value: 4.37e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084   4 KIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIVTGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGASMFF 83
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084  84 ICLFLHVGRGIYYGSYTFTETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVD 163
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084 164 KATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGLDPNADKIPFHPYYTIKDfLGILLLIFFLLSLVLFSPDLLG 243
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKD-AYNIIFWLVFIIFSLFYPFNLG 239

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 357576084 244 DPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGG 282
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLG 278
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-198 3.92e-101

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 293.89  E-value: 3.92e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084   1 PLIKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIVTGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGAS 80
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084  81 MFFICLFLHVGRGIYYGSY--TFTETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWG 158
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 357576084 159 GFSVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSN 198
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
10-196 4.04e-92

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 270.41  E-value: 4.04e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084   10 FIDLPAPSNISSWWNFGSLLGVCLIIQIVTGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGASMFFICLFLH 89
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084   90 VGRGIYYG--SYTFTETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATL 167
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 357576084  168 TRFFAFHFILPFIIAALAMVHLLFLHETG 196
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00046
cytochrome b; Validated
 2-282 4.02e-84

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 256.06  E-value: 4.02e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084   2 LIKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIVTGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGASM 81
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084  82 FFICLFLHVGRGIYYGSYTFTETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFS 161
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084 162 VDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPTGLDPN-ADKIPFHPYYTIKDFLGILLLIFFLLSLVLFSPD 240
Cdd:MTH00046 161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 357576084 241 LLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGG 282
Cdd:MTH00046 241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG 282
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
80-245 1.80e-43

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 145.85  E-value: 1.80e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084   80 SMFFICLFLHVGRGIYYGSYTFTE--TWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIW 157
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084  158 GGFSVDKATLTRFFAFHF-ILPFIIAALAMVHLLFLHETGSNNPTGLDPNADKIPFHPYYTIKDFLGILLLIFFLLSLVL 236
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 357576084  237 FSPDLLGDP 245
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 25-200 3.83e-43

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 146.78  E-value: 3.83e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084  25 FGSLLGVCLIIQIVTGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGIYYGSYTFTE- 103
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084 104 -TWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFH-FILPFII 181
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170
                 ....*....|....*....
gi 357576084 182 AALAMVHLLFLHETGSNNP 200
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 16-200 5.75e-37

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 130.61  E-value: 5.75e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084  16 PSNISSWWNFGSLLGVCLIIQIVTGLFLAMHYTSDTATAFTSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGIY 95
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084  96 YGSYTFTE--TWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAF 173
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*...
gi 357576084 174 H-FILPFIIAALAMVHLLFLHETGSNNP 200
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGP 214
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 199-282 3.62e-27

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 102.72  E-value: 3.62e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357576084 199 NPTGLDPNADKIPFHPYYTIKDFLGILLLIFFLLSLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPN 278
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80


                 ....
gi 357576084 279 KLGG 282
Cdd:cd00290   81 KLLG 84
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
250-282 6.14e-17

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 74.44  E-value: 6.14e-17
                          10        20        30
                  ....*....|....*....|....*....|...
gi 357576084  250 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGG 282
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGG 33
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 250-282 1.61e-07

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 49.79  E-value: 1.61e-07
                         10        20        30
                 ....*....|....*....|....*....|...
gi 357576084 250 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGG 282
Cdd:COG5679   66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLG 98
petD CHL00058
cytochrome b6/f complex subunit IV
 250-282 7.77e-07

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 48.07  E-value: 7.77e-07
                         10        20        30
                 ....*....|....*....|....*....|...
gi 357576084 250 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGG 282
Cdd:CHL00058  65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLG 97
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 250-282 5.03e-06

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 45.56  E-value: 5.03e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 357576084  250 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGG 282
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLG 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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