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Conserved domains on  [gi|383215309|gb|AFG73168|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Caryanda yunnana]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475933)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-339 2.75e-98

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 293.65  E-value: 2.75e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309   1 MNNNSKKLLFLSSMMMGTILSISSNSWLGVWMGLEINLLSFIPMLTNDKNSMINESSIKYFIIQVMASTMLLFSILLIQM 80
Cdd:MTH00160   1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  81 KYLMSwesEMVPSMMISSSLLVKIGAAPFHFWFPEVMGTSEWYNCLLLMTWQKIAPMMILSYCIQmNNFIFVIVILSIII 160
Cdd:MTH00160  81 NLMLF---NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLIN-NNFIIIIIILSAII 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 161 GAMGGLNQTSLRHLLAYSSISHLGWMISSMISTENIWEIYFIIYSVLSMILVLLFKQTNSFSLNQIYTASNMKTEIKFMM 240
Cdd:MTH00160 157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 241 FLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRVSFSALILSYTENSWFMNVKNKNLNLMLP 320
Cdd:MTH00160 237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316

                        330
                 ....*....|....*....
gi 383215309 321 VTIMISTMGLVLTSTLIFM 339
Cdd:MTH00160 317 FLSFISLFGLILSSLLFLL 335
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-339 2.75e-98

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 293.65  E-value: 2.75e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309   1 MNNNSKKLLFLSSMMMGTILSISSNSWLGVWMGLEINLLSFIPMLTNDKNSMINESSIKYFIIQVMASTMLLFSILLIQM 80
Cdd:MTH00160   1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  81 KYLMSwesEMVPSMMISSSLLVKIGAAPFHFWFPEVMGTSEWYNCLLLMTWQKIAPMMILSYCIQmNNFIFVIVILSIII 160
Cdd:MTH00160  81 NLMLF---NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLIN-NNFIIIIIILSAII 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 161 GAMGGLNQTSLRHLLAYSSISHLGWMISSMISTENIWEIYFIIYSVLSMILVLLFKQTNSFSLNQIYTASNMKTEIKFMM 240
Cdd:MTH00160 157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 241 FLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRVSFSALILSYTENSWFMNVKNKNLNLMLP 320
Cdd:MTH00160 237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316

                        330
                 ....*....|....*....
gi 383215309 321 VTIMISTMGLVLTSTLIFM 339
Cdd:MTH00160 317 FLSFISLFGLILSSLLFLL 335
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 24-282 9.57e-28

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 109.71  E-value: 9.57e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309   24 SNSWLGVWMGLEINLLSFIPMLTNDKNSMI-NESSIKYFIIQVMASTMLLFSILLI--------------QMKYLMSWES 88
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRsSEAGMKYFLLTLLGSSILLFGISLMynytgtlsfdelskALTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309   89 EMVPSMMISSSLLVKIGAAPFHFWFPEVMGTSEWYNCLLL-MTWQKIAPMMIL-------SYCIQMNNFIFVIVILSIII 160
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  161 GAMGGLNQTSLRHLLAYSSISHLGWMISSMISTENI----WEIYFIIYSVLSMILVLLF-----KQTNSFSLNQIYTASN 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFLCAgsviyRRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 383215309  232 MKTEIKFMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLT 282
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-292 1.20e-27

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 112.52  E-value: 1.20e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  14 MMMGTILSISSNSWLGVWMGLEINLLSF---IPMLTNDKNSmiNESSIKYFIIQVMASTMLLF----------SILLIQM 80
Cdd:COG1007  111 ATLGMMLMASANDLLTLFLGLELLSLSLyvlVAFRRDDRRS--SEAALKYFLLGALSSGFLLYgisllygatgSLNLAGI 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  81 KYLMSWESEMVPSM-----MISSSLLVKIGAAPFHFWFPEVMGTSEWYNCLLLMTWQKIAPMMIL---------SYCIQM 146
Cdd:COG1007  189 AAALAAGGANSPLLllglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveafpGLAADW 268

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 147 NNFIFVIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWMISSMIS-TENIWE---IYFIIYSVLSM---ILVLLFKQTN 219
Cdd:COG1007  269 QLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAgTPLGVSaalFYLLAYLFMNLgafAVILLLSRKG 348

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 383215309 220 SFS-----LNQIYTASNMKTeikFMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRV 292
Cdd:COG1007  349 GEAeeiedLAGLARRSPLLA---LAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRV 423
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 17-332 2.42e-23

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 100.02  E-value: 2.42e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309   17 GTILSISSNSWLGVWMGLEI-NLLSFIPMLTNDKNSMINESSIKYFIIQVMASTMLLFSILLI----------QMKYLMS 85
Cdd:TIGR01770 114 GIFLLVSSNDLLSIYLGLELqSLCFYVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIygftgslnfeDLLLFLS 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309   86 WESEMVPSM-----MISSSLLVKIGAAPFHFWFPEVMGTSEWYNCLLLMTWQKIA---PMMILSYCIQMN------NFIF 151
Cdd:TIGR01770 194 NGMLNISLLllgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFGfseawqIFLA 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  152 VIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGW-MISSMISTENIWE---IYFIIYSVLSMILVLLFKQTNSFSLNQIY 227
Cdd:TIGR01770 274 IIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKavlFYIFIYALMSLGAFGVLSLLRSYKDEWIE 353

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  228 TASNMKTEIK------FMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRVsfSALILSY 301
Cdd:TIGR01770 354 YISDFAGLFKtnpilaILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV--VKVMYFD 431

                         330       340       350
                  ....*....|....*....|....*....|.
gi 383215309  302 TENSWFMNVknkNLNLMLPVTIMISTMGLVL 332
Cdd:TIGR01770 432 KPERRIPSN---PQSKAQSLLLSISALFILF 459
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-339 2.75e-98

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 293.65  E-value: 2.75e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309   1 MNNNSKKLLFLSSMMMGTILSISSNSWLGVWMGLEINLLSFIPMLTNDKNSMINESSIKYFIIQVMASTMLLFSILLIQM 80
Cdd:MTH00160   1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  81 KYLMSwesEMVPSMMISSSLLVKIGAAPFHFWFPEVMGTSEWYNCLLLMTWQKIAPMMILSYCIQmNNFIFVIVILSIII 160
Cdd:MTH00160  81 NLMLF---NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLIN-NNFIIIIIILSAII 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 161 GAMGGLNQTSLRHLLAYSSISHLGWMISSMISTENIWEIYFIIYSVLSMILVLLFKQTNSFSLNQIYTASNMKTEIKFMM 240
Cdd:MTH00160 157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 241 FLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRVSFSALILSYTENSWFMNVKNKNLNLMLP 320
Cdd:MTH00160 237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316

                        330
                 ....*....|....*....
gi 383215309 321 VTIMISTMGLVLTSTLIFM 339
Cdd:MTH00160 317 FLSFISLFGLILSSLLFLL 335
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 7-340 4.02e-65

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 209.29  E-value: 4.02e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309   7 KLLFLSSMMMGTILSISSNSWLGVWMGLEINLLSFIPMLTNDKNSMINESSIKYFIIQVMASTMLLFSILlIQMKYLMSW 86
Cdd:MTH00112   6 KLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSST-TNAWNTGQW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  87 E----SEMVPSMMISSSLLVKIGAAPFHFWFPEVMGTSEWYNCLLLMTWQKIAPMMILSYCIQMNNF--IFVIVILSIII 160
Cdd:MTH00112  85 DitqlTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPtlLLTLAILSTLI 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 161 GAMGGLNQTSLRHLLAYSSISHLGWMISSMISTENIWEIYFIIYSVLSMILVLLFKQTNSFSLNQIYTASNMKTEIKFMM 240
Cdd:MTH00112 165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 241 FLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRVSFSALILS--YTENSWFMNVKNKNLNLM 318
Cdd:MTH00112 245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLppNTTNMMMKWRTKPKKNTL 324

                        330       340
                 ....*....|....*....|..
gi 383215309 319 LPVTIMISTMGLVLTSTLIFMF 340
Cdd:MTH00112 325 TATLTTLSTLLLPLSPMILTII 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 8-340 4.31e-62

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 201.61  E-value: 4.31e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309   8 LLFLSSMMMGTILSISSNSWLGVWMGLEINLLSFIPMLTNDKNSMINESSIKYFIIQVMASTMLLFSILLIQM---KYLM 84
Cdd:MTH00105   7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMysgQWTI 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  85 SWESEMVPSMMISSSLLVKIGAAPFHFWFPEVMGTSEWYNCLLLMTWQKIAPMMIL---SYCIQMNnFIFVIVILSIIIG 161
Cdd:MTH00105  87 TKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILyqiSPSINPN-LLLTLAILSILIG 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 162 AMGGLNQTSLRHLLAYSSISHLGWMISSMISTENIWEIYFIIYSVLSMILVLLFKQTNSFSLNQIYTASNMKTEIKFMMF 241
Cdd:MTH00105 166 GWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLIL 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 242 LSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRVSFS-ALILSYTENSWFMN--VKNKNLNLM 318
Cdd:MTH00105 246 LTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYStSLTMFPSTNNMKMKwqFENTKPMTL 325

                        330       340
                 ....*....|....*....|..
gi 383215309 319 LPVTIMISTMGLVLTSTLIFMF 340
Cdd:MTH00105 326 LPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 10-340 2.01e-61

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 199.76  E-value: 2.01e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  10 FLSSMMMGTILSISSNSWLGVWMGLEINLLSFIPMLTNDKNSMINESSIKYFIIQVMASTMLLFSILlIQMKYLMSWE-- 87
Cdd:MTH00070   9 LLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSST-INAWFTGEWTim 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  88 --SEMVPSMMISSSLLVKIGAAPFHFWFPEVMGTSEWYNCLLLMTWQKIAPMMILsycIQMN-----NFIFVIVILSIII 160
Cdd:MTH00070  88 nmQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALL---IQIShllnsNLLIIMGLLSTLI 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 161 GAMGGLNQTSLRHLLAYSSISHLGWMISSMISTENIWEIYFIIYSVLSMILVLLFKQTNSFSLNQIYTASNMKTEIKFMM 240
Cdd:MTH00070 165 GGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMM 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 241 FLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRVSFSALILSY--TENSWFMNVKNKNLNLM 318
Cdd:MTH00070 245 MLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSpnTSNSKLYWRFKNKTNNL 324

                        330       340
                 ....*....|....*....|..
gi 383215309 319 LPVTIMISTMGLVLTSTLIFMF 340
Cdd:MTH00070 325 LSLTIILSLMLLPITPTILNLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 8-340 5.63e-61

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 198.62  E-value: 5.63e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309   8 LLFLSSMMMGTILSISSNSWLGVWMGLEINLLSFIPMLTNDKNSMINESSIKYFIIQVMASTMLLFSILlIQMKYLMSW- 86
Cdd:MTH00041   7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGAL-IQAWLSGSWs 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  87 ---ESEMVPSMMISSSLLVKIGAAPFHFWFPEVMGTSEWYNCLLLMTWQKIAPMMILSYCIQMNNFIFVIV--ILSIIIG 161
Cdd:MTH00041  86 ingPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILcgILSVLVG 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 162 AMGGLNQTSLRHLLAYSSISHLGWMISSMISTENIWEIYFIIYSVLSMILVLLFKQTNSFSLNQIYTASNMKTEIKFMMF 241
Cdd:MTH00041 166 GWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFI 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 242 LSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRVSFSALILSYTENS-----WFMNVKNKNLN 316
Cdd:MTH00041 246 LSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSislfsWRNSGNITVYG 325

                        330       340
                 ....*....|....*....|....
gi 383215309 317 LMLPVTIMISTMGLVLTSTLIFMF 340
Cdd:MTH00041 326 VILSILSSISILGLLLIPLFLSFL 349
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 9-340 1.36e-57

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 189.63  E-value: 1.36e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309   9 LFLSSMMMGTILSISSNSWLGVWMGLEINLLSFIPMLTNDKNSMINESSIKYFIIQVMASTMLLFSILL---IQMKYLMS 85
Cdd:MTH00135   8 ILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTnawLTGQWDIQ 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  86 WESEMVPSMMISSSLLVKIGAAPFHFWFPEVMGTSEWYNCLLLMTWQKIAPMmILSYCIQMNNFIFVIV--ILSIIIGAM 163
Cdd:MTH00135  88 QMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPF-ALILQIAPTNPTLLITlgLTSTLVGGW 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 164 GGLNQTSLRHLLAYSSISHLGWMISSMISTENIWEIYFIIYSVLSMILVLLFKQTNSFSLNQIYTASNMKTEIKFMMFLS 243
Cdd:MTH00135 167 GGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLI 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 244 LLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRVSFS-ALILS-YTENS---WFMnvKNKNLNLM 318
Cdd:MTH00135 247 LLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAmTLTISpNTLNGttpWRL--PSTQLTLP 324

                        330       340
                 ....*....|....*....|..
gi 383215309 319 LPVTIMISTMGLVLTSTLIFMF 340
Cdd:MTH00135 325 LAISTTATLMLLPLTPAILALL 346
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 8-340 1.57e-55

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 184.40  E-value: 1.57e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309   8 LLFLSSMMMGTILSISSNSWLGVWMGLEINLLSFIPMLTNDKNSMINESSIKYFIIQVMASTMLLFSILLIQMKYLMSWE 87
Cdd:MTH00200   7 PLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGI 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  88 SEMVPSM---MISSSLLVKIGAAPFHFWFPEVMGTSEWYNCLLLMTWQKIAPMMILS--YCIQMNNFIFVIVILSIIIGA 162
Cdd:MTH00200  87 SEMLGPLsetLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIqlAPALNSNILLLLGLLSVLVGG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 163 MGGLNQTSLRHLLAYSSISHLGWMISSMISTENIWEIYFIIYSVLSMILVLLFKQTNSFSLNQIYTASNMKTEIKFMMFL 242
Cdd:MTH00200 167 WGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGL 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 243 SLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRVSF-SALILSYTENSWFMNVKNK-NLNLMLP 320
Cdd:MTH00200 247 TLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYlTLLTLSPNQINMMSSWRTKsNSNLLVG 326

                        330       340
                 ....*....|....*....|
gi 383215309 321 VTIMISTMGLVLTSTLIFMF 340
Cdd:MTH00200 327 LLLLLSILGLPLTPQLLFLF 346
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 7-338 3.36e-53

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 177.77  E-value: 3.36e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309   7 KLLFLSSMMMGTILSISSNSWLGVWMGLEINLLSFIPMLTNDKNSMINESSIKYFIIQVMASTMLLFSILLiqmkyLMSW 86
Cdd:MTH00144   6 NLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLI-----MYNL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  87 ESEMVPSMMISSSLLVKIGAAPFHFWFPEVMGTSEWYNCLLLMTWQKIAPMMILSYCI---QMNNFIFVIVILSIIIGAM 163
Cdd:MTH00144  81 SFSWFSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLdlyWLAYLLCVISVLSALVGSI 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 164 GGLNQTSLRHLLAYSSISHLGWMISSMISTENIWEIYFIIYSVLSMILVLLFKQTNSFSLNQIYTASNMKTEIKFMMFLs 243
Cdd:MTH00144 161 GGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSIISL- 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 244 LLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRVSFSALIlsytenSWFMNVKNKNLNLMLPVTI 323
Cdd:MTH00144 240 LLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL------SSSKSKKSNSSKVLNSSII 313

                        330
                 ....*....|....*
gi 383215309 324 MISTMGLVLTSTLIF 338
Cdd:MTH00144 314 SLNLLGGLLFLLLYL 328
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 9-333 4.14e-53

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 177.56  E-value: 4.14e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309   9 LFLSSMMMGTILSISSNSWLGVWMGLEINLLSFIPMLTNDKNSMINESSIKYFIIQVMASTMLLFSILLIQMKYLMSWES 88
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLSLLS 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  89 emvpSMMISSSLLVKIGAAPFHFWFPEVMGTSEWYNCLLLMTWQKIAPMMILSYCIQMNNFIFVIVILSIIIGAMGGLNQ 168
Cdd:MTH00197  82 ----VVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMNQ 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 169 TSLRHLLAYSSISHLGWMISSMISTENIWEIYFIIYSVLSMILVLLFKQTNSFSLNQIYTASNMKTEIKFMMFLSLLSIG 248
Cdd:MTH00197 158 SNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLG 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 249 GLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRVSFSALILSYTENSWFMNVKNKNLNLMLPVTIMISTM 328
Cdd:MTH00197 238 GLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFILLMMMLPLL 317


                 ....*
gi 383215309 329 GLVLT 333
Cdd:MTH00197 318 MIFTM 322
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 8-302 2.98e-49

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 167.65  E-value: 2.98e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309   8 LLFLSSMMMGTILSISSNSWLGVWMGLEINLLSFIPMLTNDKNSMINESSIKYFIIQVMASTMLLFSILLIQMKYLMSwe 87
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSLL-- 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  88 sEMVPSMMISSSLLVKIGAAPFHFWFPEVMGTSEWYNCLLLMTWQKIAPMMILSYCIQMN--NFIFVIVILSIIIGAMGG 165
Cdd:MTH00011  87 -KNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNilPMMTSMAAMSALAGGLGG 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 166 LNQTSLRHLLAYSSISHLGWMISSMISTENIWEIYFIIYSVLSMILVLLFKQTNSFSLNQIYTASNMKTEIKFMMFLSLL 245
Cdd:MTH00011 166 MNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLL 245

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 383215309 246 SIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRVSFSALILSYT 302
Cdd:MTH00011 246 SLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPT 302
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 24-282 9.57e-28

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 109.71  E-value: 9.57e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309   24 SNSWLGVWMGLEINLLSFIPMLTNDKNSMI-NESSIKYFIIQVMASTMLLFSILLI--------------QMKYLMSWES 88
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRsSEAGMKYFLLTLLGSSILLFGISLMynytgtlsfdelskALTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309   89 EMVPSMMISSSLLVKIGAAPFHFWFPEVMGTSEWYNCLLL-MTWQKIAPMMIL-------SYCIQMNNFIFVIVILSIII 160
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  161 GAMGGLNQTSLRHLLAYSSISHLGWMISSMISTENI----WEIYFIIYSVLSMILVLLF-----KQTNSFSLNQIYTASN 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFLCAgsviyRRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 383215309  232 MKTEIKFMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLT 282
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-292 1.20e-27

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 112.52  E-value: 1.20e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  14 MMMGTILSISSNSWLGVWMGLEINLLSF---IPMLTNDKNSmiNESSIKYFIIQVMASTMLLF----------SILLIQM 80
Cdd:COG1007  111 ATLGMMLMASANDLLTLFLGLELLSLSLyvlVAFRRDDRRS--SEAALKYFLLGALSSGFLLYgisllygatgSLNLAGI 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  81 KYLMSWESEMVPSM-----MISSSLLVKIGAAPFHFWFPEVMGTSEWYNCLLLMTWQKIAPMMIL---------SYCIQM 146
Cdd:COG1007  189 AAALAAGGANSPLLllglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveafpGLAADW 268

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 147 NNFIFVIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWMISSMIS-TENIWE---IYFIIYSVLSM---ILVLLFKQTN 219
Cdd:COG1007  269 QLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAgTPLGVSaalFYLLAYLFMNLgafAVILLLSRKG 348

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 383215309 220 SFS-----LNQIYTASNMKTeikFMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRV 292
Cdd:COG1007  349 GEAeeiedLAGLARRSPLLA---LAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRV 423
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 16-292 2.69e-26

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 108.57  E-value: 2.69e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  16 MGTILSISSNSWLGVWMGLEINLLSFIPMLTNDKNSMIN-ESSIKYFIIQVMASTMLLFSILLI-------QMKYLMSWE 87
Cdd:MTH00199 108 LGSLLLVSSINWLSIYLAIELQTLTLFILVALKRDSAYStEAGLKYFVLGAVSSGLFLFGCALLygltgetSIQGINSIL 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  88 SEMVPSMMISSSLLVKIGAAPFHFWFPEVMGTSEWYNCLLLMTWQKIAPMMILSYCIQMNNFIFVIVILSIIIGAMGGLN 167
Cdd:MTH00199 188 TGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLSIIYGAIGALN 267

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 168 QTSLRHLLAYSSISHLGWMI-------SSMISTENIWEIYFIIYSVLSMILVLLFKQTNSFsLNQIYTASNMKTEIKFMM 240
Cdd:MTH00199 268 QTKIKRLLAYSGIGHMGFILfgvaigsFESIQASLIYMIIYVIMSICSFSIILSLKLTKGL-IVEVSGLSRKNPVIALTL 346

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 383215309 241 FLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRV 292
Cdd:MTH00199 347 ALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 16-292 4.17e-26

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 106.65  E-value: 4.17e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  16 MGTILSISSNSWLGVWMGLEINLLSFIPMLTNDKNSMIN-ESSIKYFIIQVMASTMLLFSILLI--------------QM 80
Cdd:MTH00196   4 LGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSGYSaEAGLKYFVLGALSSGLFLFGCALLcgttgglhlsyinlVL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  81 KYLMSWESEMVP--SMMISSSLLVKIGAAPFHFWFPEVMGTSEWYNCLLLMTWQKIAPMMILSYCIQMNNFIFVIVILSI 158
Cdd:MTH00196  84 NSGQSFSSVSVPigYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGGLFSL 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 159 IIGAMGGLNQTSLRHLLAYSSISHLGWMISSM-------ISTENIWEIYFIIYSVLSMILVLLFKQTNSFsLNQIYTASN 231
Cdd:MTH00196 164 FVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsfesIQASLVYLFIYIIMSICVFSIILALNVYKNL-IIEFSGLSR 242

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 383215309 232 MKTEIKFMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRV 292
Cdd:MTH00196 243 RLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-292 3.31e-25

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 105.67  E-value: 3.31e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  14 MMMGTILSISSNSWLGVWMGLEI-NLLSFIPMLTNDKNSMINESSIKYFIIQVMASTMLLFSILLIQ-----------MK 81
Cdd:PRK05777 112 ALLGMMVMVSANDLLTLFLGLELlSLPLYALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYgatgslsfagiAK 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  82 YLMSWESEMVP----SMMISSSLLVKIGAAPFHFWFPEVMGTSEWYNCLLLMTWQKIAPMMIL---------SYCIQMNN 148
Cdd:PRK05777 192 ALADGSGNSLLllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLlrllvvafgGLSEDWQQ 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 149 FIFVIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWM-----ISSMISTENIWeIYFIIYSVLSM----ILVLLFKQ-- 217
Cdd:PRK05777 272 VLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlvglaAGTAEGYSAVL-FYLLAYLFMTLgafgVISLLRRKgg 350

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 383215309 218 --TNSFSLNQIYTASNMKTeikFMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRV 292
Cdd:PRK05777 351 eaESISDFAGLSKRSPLLA---AVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 17-332 2.42e-23

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 100.02  E-value: 2.42e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309   17 GTILSISSNSWLGVWMGLEI-NLLSFIPMLTNDKNSMINESSIKYFIIQVMASTMLLFSILLI----------QMKYLMS 85
Cdd:TIGR01770 114 GIFLLVSSNDLLSIYLGLELqSLCFYVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIygftgslnfeDLLLFLS 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309   86 WESEMVPSM-----MISSSLLVKIGAAPFHFWFPEVMGTSEWYNCLLLMTWQKIA---PMMILSYCIQMN------NFIF 151
Cdd:TIGR01770 194 NGMLNISLLllgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFGfseawqIFLA 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  152 VIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGW-MISSMISTENIWE---IYFIIYSVLSMILVLLFKQTNSFSLNQIY 227
Cdd:TIGR01770 274 IIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKavlFYIFIYALMSLGAFGVLSLLRSYKDEWIE 353

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  228 TASNMKTEIK------FMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRVsfSALILSY 301
Cdd:TIGR01770 354 YISDFAGLFKtnpilaILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV--VKVMYFD 431

                         330       340       350
                  ....*....|....*....|....*....|.
gi 383215309  302 TENSWFMNVknkNLNLMLPVTIMISTMGLVL 332
Cdd:TIGR01770 432 KPERRIPSN---PQSKAQSLLLSISALFILF 459
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 10-292 9.35e-19

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 86.35  E-value: 9.35e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  10 FLSSMMMGTILSISSNSWLGVWMGLEINLLSFIPMLTNDKNSMINESSIKYFIIQVMASTMLLFSILLIQ-------MKY 82
Cdd:COG0651  112 LFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYgatgtlnMAD 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  83 LMSWESEMVPSMMISSSLL------VKIGAAPFHFWFPEVMGTSEWYNCLLL---MTwqKIAPMMIL---------SYCI 144
Cdd:COG0651  192 LAARLAELDPGLLLAAFALllvgfgIKAALFPLHFWLPDAYPAAPSPVSALLsglLT--KVGVYAILrvltllfgaDPAL 269

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 145 QMNNFIFVIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWMISSM-ISTENIWE--IYFIIYSVLSMILV-----LLFK 216
Cdd:COG0651  270 FLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLgLGTPLGLAgaLFHLLNHALAKALLflaagAIER 349

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 383215309 217 QTNSFSLNQIYTASNMKTEIKFMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRV 292
Cdd:COG0651  350 ATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 16-292 4.80e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 81.83  E-value: 4.80e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  16 MGTILSISSNSWLGVWMGLEINLLSFIPM---------LTNDKNSMINESSIKYFIIQVMASTMLLFSILL--------- 77
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILagegsqpgsHFPSPGNTPPESGLKYWILGAMSSGFYLFGCALyfgftgneg 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  78 ----IQMKYLMSWESEM----VPSMMISSSLLVKIGAAPFHFWFPEVMGTSEWYNCLLLMTWQKIAPMMILSYCIQMNNF 149
Cdd:MTH00198 279 mlgtILSATLETTNIELrqgsLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKL 358

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 150 IFVIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWMI-----SSMISTENIWeIYFIIYSV-----LSMILVLLFKQTN 219
Cdd:MTH00198 359 LLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILigvsaGTYESLQASW-TYAVTYLVsalasFTVICTLEEFGTR 437

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 220 SFS----------------LNQIYTASNMKTEIKFMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAI------ 277
Cdd:MTH00198 438 TPTsrqrdgsfgnynlvrrLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIyylval 517

                        330
                 ....*....|....*.
gi 383215309 278 -MVMLTMITLYYYLRV 292
Cdd:MTH00198 518 fAIICTCISAFYYIRI 533
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 55-331 2.93e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 67.43  E-value: 2.93e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  55 ESSIKYFIIQVMASTMLLFSILLI-------QMKYLMSWESE------MVPSMMISSSLLVKIGAAPFHFWFPEV--MGT 119
Cdd:PRK08376 172 EAGIKYMFVGSLASSMVLLGIALLygqygtlNMAYLAVKMSEnptvvaKIALALFIAGLAMKSGAVPVHMWLPDAypAAP 251

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 120 SEWYNCLLLMTWQKIAPMM-----ILSYCIQMNNFIFVIVI---LSIIIGAMGGLNQTSLRHLLAYSSISHLGWM----- 186
Cdd:PRK08376 252 SSISAMLLVIKQAGLYALArvlfsIYGPAINLATVGWVIIIlgcLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMllglg 331

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 187 -------------ISSMISTENIWEI--YFIIYSVLSMILVLLFKQTNSFSLNQIY-TASNM-KTEIKFMmfLSLLSIGG 249
Cdd:PRK08376 332 vglaalgdpamasYGEIALAGGIYHIvnHALYKALLFLTAGAVIYETGTRNLNELGgLARTMpKTTIAFL--IGAAAIVG 409

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 250 LPPFIGFLPKWMVMQSMMEMNmTSLMAIMVMLTMITLYYYLRVSFSALILSYTENswFMNVKNKNLNLMLPV---TIMIS 326
Cdd:PRK08376 410 LPPFNGFASKWLIYESSALFN-PILGVIAMIGSVLTLASFVKVFHTAFFGPPSEK--VMNVKEPPKPMLVPMlilAIAII 486


                 ....*
gi 383215309 327 TMGLV 331
Cdd:PRK08376 487 GMGLF 491
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 34-292 2.54e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 64.52  E-value: 2.54e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  34 LEINLLSFIPMLTNDKNSMINESSIKYFIIQVMASTMLLFSILLIQMK--YL-MSWESEMVPSM--------MISSSLLV 102
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVtgTLnMADLAGALAENptvvtafgFVLLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 103 KIGAAPFHFWFPEVM-GTSEWYNCLLLMTWQKIAPMMI-----------LSYCIQMNNFIFVIVILSIIIGAMGGLNQTS 170
Cdd:PRK08375 215 KAAVFPLHTWLPRAYpAAPPVVTALLSGLVTKVAVYALiriyftvfggdFRFALGLGWLLAVLALLSMLVGSLAALGQDD 294

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 171 LRHLLAYSSISHLGWMIsSMISTENIWEIYF-IIYSVLSMilvlLFKQTNSFSLNQIYTASNMKT---------EIKFMM 240
Cdd:PRK08375 295 VKRVLAYSTVSQMGYIL-LGLALLTPLALAAgLLHLLHHA----LMKGALFLAAGAIEVTYGTRRlselsglgrRMPLTA 369

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 383215309 241 ---FLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRV 292
Cdd:PRK08375 370 aafAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRI 424
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
54-306 5.23e-10

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 60.45  E-value: 5.23e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  54 NESSIKYFIIQVMASTMLLFSILLIqmkYLMSWES----EMVPSMMISSSLLV-------------KIGAAPFHFWFPEV 116
Cdd:PRK02504 160 NEAALKYLLIGAASSAIFLYGSSLL---YGLSGGStqlsAIALALITSPSLGLalalvfviagiafKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 117 MGTSEWYNCLLLMTWQKIA----PMMILSYCI----QMNNFIF-VIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGW-M 186
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFpsfdEQWKLLFtALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFvM 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 187 ISSMISTENIWEiyfiiySVLSMILVLLFKQTNSFS---LNQIYTASNMKTE----------IKFMMFLSLLSIGGLPPF 253
Cdd:PRK02504 317 IGLVAGTEAGYA------SMVFYLLAYLFMNLGAFAcviLFSLRTGTDQISDyaglyqkdplLTLGLSLCLLSLGGIPPL 390

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 383215309 254 IGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRV----------SFSALILSYTENSW 306
Cdd:PRK02504 391 AGFFGKIYLFWAGWQAGLYLLVLVGLVTSVISIYYYIRVikmmvvkepqEMSDVVKNYPEINW 453
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 145-292 1.60e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 58.83  E-value: 1.60e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 145 QMNNFIFVIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWMISSM-ISTENIWE--IYFIIYSVL---SMILV--LLFK 216
Cdd:PRK12665 271 GLDTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIaLSTVAGLSgaIYYVAHHITvqtTLFLVvgLIER 350

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 383215309 217 QTNSFSLNQIYTASNMKTEIKFMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMT---SLMAIMVMLTMITLYYYLRV 292
Cdd:PRK12665 351 QAGSSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLEAGAEDGTWlawALVAGGVVTSLLTLYAVARV 429
ndhB CHL00049
NADH dehydrogenase subunit 2
 54-292 4.71e-09

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 57.32  E-value: 4.71e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  54 NESSIKYFIIQVMASTMLL--FSILL------IQMKYLMS--WESEMVPSMMISSSLLV-------KIGAAPFHFWFPEV 116
Cdd:CHL00049 161 NEATMKYLLMGGASSSILVygFSWLYglsggeIELQEIVNglINTQMYNSPGISIALIFitvgigfKLSLAPFHQWTPDV 240

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 117 MGTSEWYNCLLLMTWQKIAPMM--------ILSYCIQMNNFIFVIV-ILSIIIGAMGGLNQTSLRHLLAYSSISHLGWMI 187
Cdd:CHL00049 241 YEGSPTPVVAFLSVTSKVAASAlatrifdiPFYFSSNEWHLLLEILaILSMILGNLIAITQTSMKRMLAYSSIGQIGYVI 320

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 188 SSMISTENIWEIYFIIYSVLSMILVLL--FKQTNSFSL----NQI--YTASNMKTEI-KFMMFLSLLSIGGLPPFIGFLP 258
Cdd:CHL00049 321 IGIIVGDSNDGYASMITYMLFYIFMNLgtFACIVLFGLrtgtDNIrdYAGLYTKDPFlALSLALCLLSLGGIPPLAGFFG 400

                        250       260       270
                 ....*....|....*....|....*....|....
gi 383215309 259 KWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRV 292
Cdd:CHL00049 401 KLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKI 434
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
150-296 2.06e-08

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 55.34  E-value: 2.06e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 150 IFVIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWMISSmISTENIWEIY-FIIYSVLSMIL-VLLF-------KQTNS 220
Cdd:PRK12663 275 LATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLG-LALGTPAGINgAIFYLVHDMVVkTALFliagslvRLTGY 353

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 383215309 221 FS---LNQIYTASNMKTEIKFMMFLSllsIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRVSFSA 296
Cdd:PRK12663 354 RSlqyLGGLYRKEPLFGALFLILIFA---IGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRIFFLA 429
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
55-295 5.59e-08

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 53.88  E-value: 5.59e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  55 ESSIKYFIIQVMASTMLLFSILL------------IQMKYLMSWESEMV--PSMMISSSLLVKIGAAPFHFWFPEVMGTS 120
Cdd:PRK06277 150 KAALKYMILGNVAGSILLLGIGFllastgtlnitdIHNALLVNPTSPVIygGLLLLIFGLLYGSGLPPFHTIKSDIYAKA 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 121 EWYNCLLLMTWQK---IAPMMI-------LSYCIQMNNFIFVIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWMISSM 190
Cdd:PRK06277 230 KPFGSALLQTFSKfvlVALMLVifklfggLSYFPSAQGVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGL 309

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 191 -------ISTENIWEIYFIIY-SVLSMILVLLFKQTNSFSLNQIYTASNMKTEIKFMMFLSLLSIGGLPPFIGFLPKWMV 262
Cdd:PRK06277 310 algtplgIVAGIFHAINHVIYkSALFLGAGIVSYRTKTSNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLML 389

                        250       260       270
                 ....*....|....*....|....*....|...
gi 383215309 263 MQSMMEMNMTSLMAIMVMLTMITLYYYLRVSFS 295
Cdd:PRK06277 390 AQAAMQANMPELAIIMIIVSIGTFVSMMKAFYL 422
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 149-295 4.26e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 51.51  E-value: 4.26e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 149 FIFVIVIL---SIIIGAMGGLNQTSLRHLLAYSSISHLGW------MISSMISTENIWEI--YFIIYSVLSMILVLLFKQ 217
Cdd:PRK12667 294 LSPILIILgavSAIIGALMMVVQKDVKRLLAYSTISHMGYifmgigIGTQLGLAAALFHIinHAIAKSLLFLASGVFIHA 373

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 383215309 218 TNSFSLNQIYTASNMKTEIKFMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRVSFS 295
Cdd:PRK12667 374 AGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYS 451
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 1-291 4.37e-06

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 48.45  E-value: 4.37e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309   1 MNNNSKKLLFLSSMMMGTILSISSNSWLGVWMGLEINLL-SFIPMLTNDKNSmiNESSIKYFIIQVMASTMLLFSILLIQ 79
Cdd:PRK08668  94 TKNDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFsSFMMVPMGKKES--RKASLKYFVLSAIGAYAMLYAIFLIY 171

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  80 MKY--------------LMSWESEMVPSMMISSSLLVKIGAAPFHFWFPEV------------------MGTSEWYNCLL 127
Cdd:PRK08668 172 AKTgtfdfadisqglinDTSTGFALIVFLFLLAFGVAKAGIFPLHVWAPDAyseapqsfsavlsgqlskLGAYGFLLVLY 251

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 128 LMTWQKIAPMMILSYCIQMNNFIFVIV-ILSIIIGAMGGLNQTSLRHLLAYSSISHLGWM---ISSMISTENIWEIYFII 203
Cdd:PRK08668 252 VLPGTKLFSEFGTYRGVPLFNYILAWLgNISIIVGTLMAILQEDIKKLIAYSSVANGGYIlvgLGLGTSLGFAGGLFHVF 331

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 204 YSVLSMILVLLFKQTNSFSLNQiYTASNM-----KTEIKFMMFL-SLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAI 277
Cdd:PRK08668 332 NHALFKGLFFLIFAAVIYRTGT-TKISEMgglieKMPFTFAMYLvAIISLAGIPPMSGFASKWLIFEALISKGMPITAFM 410

                        330
                 ....*....|....
gi 383215309 278 MVMLTMITLYYYLR 291
Cdd:PRK08668 411 AFFGSIGSFLYVFR 424
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 3-338 7.99e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 47.50  E-value: 7.99e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309   3 NNSKKLLFLSSMMMGTILSISSNSWLGVWMGLEINLLSFIPMLTNDKNSMINESSIKYFIIQVMASTMLLFSILLI---- 78
Cdd:PRK06589 114 SSSRFLFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVILiytk 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  79 --QMKYLMSWESEMVPSMMISSSLLVKIGAA---PFHFWFPEVMGTSEWYNCLL---------LMTWQKIAPMM----IL 140
Cdd:PRK06589 194 tgNLDFVSGGLFSKNQSIILLLMFIYGIAKTaifPVHSWLPAAMVAHYPVSALLhavivvktgLFCIYKILLYIfglsYL 273

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 141 SYCIQMNNFIFVIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWMI--SSMISTENIWEIYFIIYS------VLSMILV 212
Cdd:PRK06589 274 QRIFAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALlsAFILTPKALGAAILHLVShsfakiCLFYSMG 353

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 213 LLFKQTNSFSLNQIYTASNMKTEIKFMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSL----MAIMVMLTMITLYY 288
Cdd:PRK06589 354 SIYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLsiivMLVVIASSILSALY 433

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|
gi 383215309 289 YLRVSFSALILSYTENSwfmnvknkNLNLMLPVTIMISTMGLVLTSTLIF 338
Cdd:PRK06589 434 LLKILSSIYKPSLSENS--------FITKSLPYLMQISVITCCCALTLFY 475
PRK12650 PRK12650
DUF4040 family protein;
91-298 1.66e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 46.57  E-value: 1.66e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  91 VPSMMISSSLLVKIGAAPFHFWFPEVMGTSEWYNCLL---LMTWQKIAPMMILS---YCIQMNNFIFVIV-ILSIIIGAM 163
Cdd:PRK12650 209 VVAVLIAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLhaaAVVKAGIYLLLRFSpvfHDVAVWNWLLIIVgMITALMGAV 288

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 164 GGLNQTSLRHLLAYSSISHLGWmISSMISTENIWEI---------YFIIYSVLSMILVLLFKQTNSFSLNQIyTASNMKT 234
Cdd:PRK12650 289 FAVQKTDLKKLTAYSTVSQLGW-IVATIGVGTPFALtaavvhtlaHALFKSSLFMLIGVVDHQAGTRDIRRL-GSLWRRM 366

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 235 EIKF-MMFLSLLSIGGLPPFIGFLPKWMVMQSMME-----MNMTSLMAIMVMLTMITLYYYLRVSFSALI 298
Cdd:PRK12650 367 PFTFvSVTIAALSMAAVPPLFGFVSKEGMLTAFLEapggnAGVVLLLVGAALGAVFTFAYSARLVLGAFV 436
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 100-325 4.61e-05

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 44.48  E-value: 4.61e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 100 LLVKIGAAPFHFWFPEVMGTSEWYNCLLLMTWQKIAPMMILSYCIQMNNFIFVIVILSIIIGAMggLNQTSLRHLLAYSS 179
Cdd:MTH00091  67 LMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLLLFGLLICFFQM--FLLKSYKNLLILSS 144

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 180 ISHLGWMISSMISTENIWEIYFIIYSVLSMILVLLFKQTNSfslnqiytasnmkteIKFMMFLSLLSIGGLPPFIGFLPK 259
Cdd:MTH00091 145 TESFNWLILSFFFSFFNVFFLFFYYFLLMLFLIPKFNNVNK---------------LNFVSWETLLVFMNLPFSVTFFVK 209

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 383215309 260 WMVMQSMMEMNMTSLMAIMVMLTMITLYyylrVSFSALILSYTENSWFMNVKNKNLNLMLPVTIMI 325
Cdd:MTH00091 210 IFSLSEILKVLGFFLLFLLFLMFLSVLS----LSFWLVNLSTKLFLMLFKYNKGFFFFFLPLMLLS 271
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 95-263 5.23e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 44.94  E-value: 5.23e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  95 MISSSLLVKIGAAPFHFWFPEVMGTSEWYNCLLLMTWQKIAPMMILSYCIQMNNFIFVIV----ILSIIIGAMGGLNQTS 170
Cdd:PRK07234 189 LIALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLDLIVrifgVGTALLGVLFALLEKD 268

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 171 LRHLLAYSSISHLGWMISSMIstenIWEIYFIIYSVLSMILVLLFKQTNSFSLNQIytaSNMKTEIKFMMFLSL--LSIG 248
Cdd:PRK07234 269 LKRMLAFSTISQLGFILAAPL----VGGLYALAHGLVKSTLFLCAGALPSRNFTEL---ISQMLGIGKWIPLTMasFSIA 341

                        170
                 ....*....|....*
gi 383215309 249 GLPPFIGFLPKWMVM 263
Cdd:PRK07234 342 GFPLLAGFVSKVLTL 356
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 148-292 1.04e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 43.78  E-value: 1.04e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 148 NFIFVIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWM---ISSMISTENIWEIYFIIY-----SVLSMILVLLFKQTN 219
Cdd:PRK07691 276 YLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVIlvgVAMMTESGMIGAIYYLIHdmivkAALFLLIGIMIKITG 355

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 383215309 220 SFSLNQIYTASNMKTEIKFMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRV 292
Cdd:PRK07691 356 TTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKI 428
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 56-330 5.38e-04

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 41.46  E-value: 5.38e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309   56 SSIKYFIIQVMASTMLLFSILLIQMKYLMSW--ESEMVPSMMISSSLL----------VKIGAAPFHFWFPEVMGTSEWY 123
Cdd:TIGR01972 157 AAMKFFLYTLAGSLLMLLAILGLYFLGGGTFdlLELLNLPLPFGVQTWlflaffiafaVKVPLFPLHTWLPDAHVEAPTA 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  124 NCLLLM-TWQKIAPMMILSYCIQM--------NNFIFVIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWM---ISSMI 191
Cdd:TIGR01972 237 GSVILAgVLLKMGTYGFLRFNLPLfpdaslyfAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVllgIFSFN 316

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  192 STENIWEIYF-----IIYSVLSMILVLLFKQTNSFSLNQIYTASN-MKTEIKFMMFLSLLSIgGLPPFIGFLPKWMVMQS 265
Cdd:TIGR01972 317 ELGISGAVFQmishgLITAALFLLVGVLYERAHTRDIAKYGGLANkMPVLAAFFMLFAMASL-GLPGTSGFVGEFLILLG 395

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 383215309  266 MMEMN--MTSLMAIMVMLTMI-TLYYYLRVSFSAliLSYTENSWFMNVKNKNLNLMLPVTIMISTMGL 330
Cdd:TIGR01972 396 SFKVNpvVAFLAALGIVLAAAyMLTLYKRVFFGE--LSNPEVAEFPDLNGREIAVLAPLVVLILFLGL 461
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 83-292 1.42e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 40.12  E-value: 1.42e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  83 LMSWESEMVPSMMISSSLLV------KIGAAPFHFWFPEVMGTS-EWYNCLLLMTWQKIAPMMILSYCI---------QM 146
Cdd:PRK08676 193 LAAHASLLSPSVLGASFLFIfigflaKSGLVPFHTWLPAAYAKApSVVSALLSGTVLNIGIYGILRLSAllrqsgaaeQF 272

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 147 NNFIFVIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWMISSmISTENIWEIYFIIYSVLSMILV---------LLFKQ 217
Cdd:PRK08676 273 SNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLG-IGIGTPLALFWMLFHMLAHSLVksglffsagILHRQ 351

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 383215309 218 TNSFSLNQIYTASNMKTEIKFMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMIT---LYYYLRV 292
Cdd:PRK08676 352 YRSDRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILLQLGGISVWLVLAVLLLLLLAAssfAIFLLKA 429
PRK12646 PRK12646
DUF4040 family protein;
108-286 3.63e-03

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 39.35  E-value: 3.63e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 108 PFHFWFPEVMGTSEWYNCLL---LMTWQKIAPMMILSYCIQMNNFIFVIV----ILSIIIGAMGGLNQTSLRHLLAYSSI 180
Cdd:PRK12646 228 PFHIWLPRAMAAPTPVSAYLhsaTMVKAGIFLLFRFTPLLGLSNMYIYIVtfvgLITMLFGSITALKQWDLKGILAYSTI 307

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 181 SHLGwMISSMI---------STENIWEIYFIIY--------------SVLSMILVLLFKQTNSFSLNQIYTASNMKTEIK 237
Cdd:PRK12646 308 SQLG-MIMAMVgigggyaqhQQDAIASIYVFVLfaalfhlmnhaifkCALFMGVGIIDHEAGTRDIRILSGMRQLFPKMN 386

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 383215309 238 FMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITL 286
Cdd:PRK12646 387 LVMTIAALSMAGVPFLNGFLSKEMFLDALTQTGQLSQFSLISMIIIVFI 435
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 146-292 8.80e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 37.79  E-value: 8.80e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309 146 MNNFIFVIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWMISSMISTENIWEIYFIIYSV-LSMILVLLFKQTNSFSLN 224
Cdd:PRK12662 278 FNNVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVnHSIVKSALFMVSGSISYH 357

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 383215309 225 ----QIYTASNMKT---EIKFMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRV 292
Cdd:PRK12662 358 fgttKLEDCLNLWKsmpKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKI 432
ND2 MTH00059
NADH dehydrogenase subunit 2; Provisional
 14-160 9.34e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177131  Cd Length: 289  Bit Score: 37.22  E-value: 9.34e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215309  14 MMMGTILSISSNSWLGVWMGLEINLLSFIP--MLTNDKNSMINESSIKYFIIQVMASTMLLFSILLIQMKYLmswesemv 91
Cdd:MTH00059  15 SLFFCLLCLVSDSLLGFWVFLELCGLSLIPcfFLSSNSNVLNFYSSLLSYIVMSGLSSSLLVSGLLFSDLYF-------- 86

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 383215309  92 psmMISSSLLVKIGAAPFHFWFPEVMGTSEWYNCLLLMTWQKIaPMMILSYCIQMNNFIFVIVILSIII 160
Cdd:MTH00059  87 ---FIFFGFVVKFGLFPFMFWVYRVFSNSSWVVIWLISVVMKF-PVLFFCFFLQGGGLSLVFVDCFLTI 151
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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