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Conserved domains on  [gi|383215347|gb|AFG73187|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Ceracris nigricornis nigricornis]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475933)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-340 1.49e-94

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 284.41  E-value: 1.49e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347   1 MNNNSMKLLFLSTLLMGTILSISSNTWIGIWMGLEINLLSFIPMLANSKNMMMNESAIKYFIVQAMASTMLLFSILLIQL 80
Cdd:MTH00160   1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  81 KIPINwekEIIPSMMISSSLLLKIGAAPFHFWFPEVMSMSSWINCLILMTWQKIAPMMVLSYCIQMStFMFMINILSIII 160
Cdd:MTH00160  81 NLMLF---NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN-FIIIIIILSAII 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347 161 GALGGLNQTSLRQILAYSSISHLGWMISSLIISENIWELYFIIYSTLSMIMVLLFKNMNLFFLNQIYSSNNMKTEIKFMM 240
Cdd:MTH00160 157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347 241 FLSLLSLGGLPPFLGLiLPKWIIMQMMIENNMTTIMTIMVIFTTITLYYYMRISFSALIMSYTENSWFMSIKPNKSKILL 320
Cdd:MTH00160 237 FLNLLSLGGLPPFLGF-LPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLIL 315

                        330       340
                 ....*....|....*....|
gi 383215347 321 TSMVMISTLGLICTSTLISL 340
Cdd:MTH00160 316 NFLSFISLFGLILSSLLFLL 335
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-340 1.49e-94

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 284.41  E-value: 1.49e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347   1 MNNNSMKLLFLSTLLMGTILSISSNTWIGIWMGLEINLLSFIPMLANSKNMMMNESAIKYFIVQAMASTMLLFSILLIQL 80
Cdd:MTH00160   1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  81 KIPINwekEIIPSMMISSSLLLKIGAAPFHFWFPEVMSMSSWINCLILMTWQKIAPMMVLSYCIQMStFMFMINILSIII 160
Cdd:MTH00160  81 NLMLF---NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN-FIIIIIILSAII 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347 161 GALGGLNQTSLRQILAYSSISHLGWMISSLIISENIWELYFIIYSTLSMIMVLLFKNMNLFFLNQIYSSNNMKTEIKFMM 240
Cdd:MTH00160 157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347 241 FLSLLSLGGLPPFLGLiLPKWIIMQMMIENNMTTIMTIMVIFTTITLYYYMRISFSALIMSYTENSWFMSIKPNKSKILL 320
Cdd:MTH00160 237 FLNLLSLGGLPPFLGF-LPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLIL 315

                        330       340
                 ....*....|....*....|
gi 383215347 321 TSMVMISTLGLICTSTLISL 340
Cdd:MTH00160 316 NFLSFISLFGLILSSLLFLL 335
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 24-281 9.59e-21

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 90.45  E-value: 9.59e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347   24 SNTWIGIWMGLEINLLSFIPMLA-NSKNMMMNESAIKYFIVQAMASTMLLFSILLI--------------QLKIPINWEK 88
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMynytgtlsfdelskALTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347   89 EIIPSMMISSSLLLKIGAAPFHFWFPEVMSMSSWINCLIL-MTWQKIAPMMVL-------SYCIQMSTFMFMINILSIII 160
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  161 GALGGLNQTSLRQILAYSSISHLGWMISSLIISENI----WELYFIIYSTLSMIMVLLFKNMNL----FFLNQIYSSNNM 232
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFLCAGSVIYrrvhTRNIRDYGGLAK 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 383215347  233 KTEIKFMMFLSLLSLGGLPPFLGLILPKWIIMQMMIENNMTTIMTIMVI 281
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVV 289
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-293 3.89e-16

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 79.00  E-value: 3.89e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347   8 LLFLSTLlmGTILSISSNTWIGIWMGLEINLLSFIPMLA-NSKNMMMNESAIKYFIVQAMASTMLLFSILL--------- 77
Cdd:COG1007  107 LLLFATL--GMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLlygatgsln 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  78 ---IQLKIPINWEKE---IIPSMMISSSLLLKIGAAPFHFWFPEVMSMSSWINCLILMTWQKIAPMMVL---------SY 142
Cdd:COG1007  185 lagIAAALAAGGANSpllLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveafpGL 264

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347 143 CIQMSTFMFMINILSIIIGALGGLNQTSLRQILAYSSISHLGWMISSLII-SENIWE---LYFIIYSTLSM---IMVLLF 215
Cdd:COG1007  265 AADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAgTPLGVSaalFYLLAYLFMNLgafAVILLL 344

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347 216 KNmNLFFLNQIYSSNNMKTEIKFMMFlsllslGGLPPFLGLI-LP-------KWIIMQMMIENNMTTIMTIMVIFTTITL 287
Cdd:COG1007  345 SR-KGGEAEEIEDLAGLARRSPLLAL------AMTIFLLSLAgIPptagffgKFYVFSAAVEAGLYWLAVIAVLNSVISA 417


                 ....*.
gi 383215347 288 YYYMRI 293
Cdd:COG1007  418 YYYLRV 423
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 15-338 2.59e-14

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 73.44  E-value: 2.59e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347   15 LMGTILSISSNTWIGIWMGLEI-NLLSFIPMLANSKNMMMNESAIKYFIVQAMASTMLLFSILLI----------QLKIP 83
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELqSLCFYVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIygftgslnfeDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347   84 INWEKEIIPSM-----MISSSLLLKIGAAPFHFWFPEVMSMSSWINCLILMTWQKIA---PMMVLSYCIQMS------TF 149
Cdd:TIGR01770 192 LSNGMLNISLLllgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFGfseawqIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  150 MFMINILSIIIGALGGLNQTSLRQILAYSSISHLGW-MISSLIISENIWE---LYFIIYSTLSMIMVLLFKNMNLFFLNQ 225
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKavlFYIFIYALMSLGAFGVLSLLRSYKDEW 351

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  226 IYSSNNMKTEIKFMMFLSLLSLGGLPPFLGL-----ILPKWIIMQMMIENNMTTIMTIMVIFTTITLYYYMRIsfSALIM 300
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIpplagFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV--VKVMY 429

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 383215347  301 SYTENSWFMSIKPNKSKILLTSMVMISTLGLICTSTLI 338
Cdd:TIGR01770 430 FDKPERRIPSNPQSKAQSLLLSISALFILFLGLFPSLI 467
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-340 1.49e-94

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 284.41  E-value: 1.49e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347   1 MNNNSMKLLFLSTLLMGTILSISSNTWIGIWMGLEINLLSFIPMLANSKNMMMNESAIKYFIVQAMASTMLLFSILLIQL 80
Cdd:MTH00160   1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  81 KIPINwekEIIPSMMISSSLLLKIGAAPFHFWFPEVMSMSSWINCLILMTWQKIAPMMVLSYCIQMStFMFMINILSIII 160
Cdd:MTH00160  81 NLMLF---NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN-FIIIIIILSAII 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347 161 GALGGLNQTSLRQILAYSSISHLGWMISSLIISENIWELYFIIYSTLSMIMVLLFKNMNLFFLNQIYSSNNMKTEIKFMM 240
Cdd:MTH00160 157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347 241 FLSLLSLGGLPPFLGLiLPKWIIMQMMIENNMTTIMTIMVIFTTITLYYYMRISFSALIMSYTENSWFMSIKPNKSKILL 320
Cdd:MTH00160 237 FLNLLSLGGLPPFLGF-LPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLIL 315

                        330       340
                 ....*....|....*....|
gi 383215347 321 TSMVMISTLGLICTSTLISL 340
Cdd:MTH00160 316 NFLSFISLFGLILSSLLFLL 335
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 7-340 8.74e-54

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 180.02  E-value: 8.74e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347   7 KLLFLSTLLMGTILSISSNTWIGIWMGLEINLLSFIPMLANSKNMMMNESAIKYFIVQAMASTMLLFSILLIQLKIPiNW 86
Cdd:MTH00112   6 KLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTG-QW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  87 E----KEIIPSMMISSSLLLKIGAAPFHFWFPEVMSMSSWINCLILMTWQKIAPMMVLSYCIQM--STFMFMINILSIII 160
Cdd:MTH00112  85 DitqlTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSlnPTLLLTLAILSTLI 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347 161 GALGGLNQTSLRQILAYSSISHLGWMISSLIISENIWELYFIIYSTLSMIMVLLFKNMNLFFLNQIYSSNNMKTEIKFMM 240
Cdd:MTH00112 165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347 241 FLSLLSLGGLPPFLGLiLPKWIIMQMMIENNMTTIMTIMVIFTTITLYYYMRISFSAlIMSYTENSWFMSIK---PNKSK 317
Cdd:MTH00112 245 MLTLLSLAGLPPLTGF-MPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYIS-TITLPPNTTNMMMKwrtKPKKN 322

                        330       340
                 ....*....|....*....|...
gi 383215347 318 ILLTSMVMISTLGLICTSTLISL 340
Cdd:MTH00112 323 TLTATLTTLSTLLLPLSPMILTI 345
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 10-341 3.03e-53

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 178.58  E-value: 3.03e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  10 FLSTLLMGTILSISSNTWIGIWMGLEINLLSFIPMLANSKNMMMNESAIKYFIVQAMASTMLLFSILLIQLKI---PINW 86
Cdd:MTH00070   9 LLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTgewTIMN 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  87 EKEIIPSMMISSSLLLKIGAAPFHFWFPEVMSMSSWINCLILMTWQKIAPMMVLsycIQMS-----TFMFMINILSIIIG 161
Cdd:MTH00070  89 MQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALL---IQIShllnsNLLIIMGLLSTLIG 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347 162 ALGGLNQTSLRQILAYSSISHLGWMISSLIISENIWELYFIIYSTLSMIMVLLFKNMNLFFLNQIYSSnNMKTEIKFMMF 241
Cdd:MTH00070 166 GWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSS-WSKNPTLTSMM 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347 242 LSLLSLGGLPPFLGLILPKWIIMQMMIENNMTTIMTIMVIFTTITLYYYMRISFSALIMSY--TENSWFMSIKPNKSKIL 319
Cdd:MTH00070 245 MLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSpnTSNSKLYWRFKNKTNNL 324

                        330       340
                 ....*....|....*....|..
gi 383215347 320 LTSMVMISTLGLICTSTLISLY 341
Cdd:MTH00070 325 LSLTIILSLMLLPITPTILNLF 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 8-341 3.66e-52

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 175.80  E-value: 3.66e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347   8 LLFLSTLLMGTILSISSNTWIGIWMGLEINLLSFIPMLANSKNMMMNESAIKYFIVQAMASTMLLFSIlLIQLKIPINW- 86
Cdd:MTH00105   7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAI-IINLMYSGQWt 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  87 ---EKEIIPSMMISSSLLLKIGAAPFHFWFPEVMSMSSWINCLILMTWQKIAPMMVL---SYCIQMsTFMFMINILSIII 160
Cdd:MTH00105  86 itkLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILyqiSPSINP-NLLLTLAILSILI 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347 161 GALGGLNQTSLRQILAYSSISHLGWMISSLIISENIWELYFIIYSTLSMIMVLLFKNMNLFFLNQIYSSNNMKTEIKFMM 240
Cdd:MTH00105 165 GGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLI 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347 241 FLSLLSLGGLPPFLGLiLPKWIIMQMMIENNMTTIMTIMVIFTTITLYYYMRISFS-ALIMSYTENSWFMSI--KPNKSK 317
Cdd:MTH00105 245 LLTLLSLGGLPPLTGF-MPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYStSLTMFPSTNNMKMKWqfENTKPM 323

                        330       340
                 ....*....|....*....|....
gi 383215347 318 ILLTSMVMISTLGLICTSTLISLY 341
Cdd:MTH00105 324 TLLPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 3-341 1.72e-49

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 168.96  E-value: 1.72e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347   3 NNSMKLLFLSTLLMGTILSISSNTWIGIWMGLEINLLSFIPMLANSKNMMMNESAIKYFIVQAMASTMLLFSILlIQLKI 82
Cdd:MTH00041   2 NRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGAL-IQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  83 PINW----EKEIIPSMMISSSLLLKIGAAPFHFWFPEVMSMSSWINCLILMTWQKIAPMMVLSYCIQMSTFMFMI--NIL 156
Cdd:MTH00041  81 SGSWsingPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILIlcGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347 157 SIIIGALGGLNQTSLRQILAYSSISHLGWMISSLIISENIWELYFIIYSTLSMIMVLLFKNMNLFFLNQIYSSNNMKTEI 236
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347 237 KFMMFLSLLSLGGLPPFLGLILpKWIIMQMMIENNMTTIMTIMVIFTTITLYYYMRISFSALIMSYTENS-----WFMSI 311
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLN-KFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSislfsWRNSG 319

                        330       340       350
                 ....*....|....*....|....*....|
gi 383215347 312 KPNKSKILLTSMVMISTLGLICTSTLISLY 341
Cdd:MTH00041 320 NITVYGVILSILSSISILGLLLIPLFLSFL 349
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 9-331 6.88e-47

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 161.90  E-value: 6.88e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347   9 LFLSTLLMGTILSISSNTWIGIWMGLEINLLSFIPMLANSKNMMMNESAIKYFIVQAMASTMLLFSIL----------LI 78
Cdd:MTH00135   8 ILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTtnawltgqwdIQ 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  79 QLKIPInwekeiiPSMMISSSLLLKIGAAPFHFWFPEVMSMSSWINCLILMTWQKIAPMmVLSYCIQ--MSTFMFMINIL 156
Cdd:MTH00135  88 QMSHPL-------PTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPF-ALILQIAptNPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347 157 SIIIGALGGLNQTSLRQILAYSSISHLGWMISSLIISENIWELYFIIYSTLSMIMVLLFKNMNLFFLNQIYSSnNMKTEI 236
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATS-WTKAPA 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347 237 KFMMFLSLLSLGGLPPFLGLILPKWIIMQMMIENNMTTIMTIMVIFTTITLYYYMRISFS-ALIMS-YTENS---WFMsi 311
Cdd:MTH00135 239 LTALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAmTLTISpNTLNGttpWRL-- 316

                        330       340
                 ....*....|....*....|
gi 383215347 312 kPNKSKILLTSMVMISTLGL 331
Cdd:MTH00135 317 -PSTQLTLPLAISTTATLML 335
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 9-329 1.96e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 157.53  E-value: 1.96e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347   9 LFLSTLLMGTILSISSNTWIGIWMGLEINLLSFIPMLANSKNMMMNESAIKYFIVQAMASTMLLFSILLIQLKIPInwek 88
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYL---- 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  89 EIIPSMMISSSLLLKIGAAPFHFWFPEVMSMSSWINCLILMTWQKIAPMMVLSYCIQMSTFMFMINILSIIIGALGGLNQ 168
Cdd:MTH00197  78 SLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMNQ 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347 169 TSLRQILAYSSISHLGWMISSLIISENIWELYFIIYSTLSMIMVLLFKNMNLFFLNQIYSSNNMKTEIKFMMFLSLLSLG 248
Cdd:MTH00197 158 SNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLG 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347 249 GLPPFLGLiLPKWIIMQMMIENNMTTIMTIMVIFTTITLYYYMRISFSALIMSYTENSWFMSIKPNKSKILLTSMVMIST 328
Cdd:MTH00197 238 GLPPLSGF-FLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFILLMMMLPL 316


                 .
gi 383215347 329 L 329
Cdd:MTH00197 317 L 317
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 6-340 2.75e-44

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 155.13  E-value: 2.75e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347   6 MKLLFLSTLLMGTILSISSNTWIGIWMGLEINLLSFIPMLANSKNMMMNESAIKYFIVQAMASTMLLFSILLIQLKIP-- 83
Cdd:MTH00200   5 ILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGqw 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  84 -INWEKEIIPSMMISSSLLLKIGAAPFHFWFPEVMSMSSWINCLILMTWQKIAPMMVLS--YCIQMSTFMFMINILSIII 160
Cdd:MTH00200  85 gISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIqlAPALNSNILLLLGLLSVLV 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347 161 GALGGLNQTSLRQILAYSSISHLGWMISSLIISENIWELYFIIYSTLSMIMVLLFKNMNLFFLNQIYSSNNMKTEIKFMM 240
Cdd:MTH00200 165 GGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLL 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347 241 FLSLLSLGGLPPFLGLiLPKWIIMQMMIENNMTTIMTIMVIFTTITLYYYMRISFSALIMSYTENSWFMSI--KPNKSKI 318
Cdd:MTH00200 245 GLTLLSLGGLPPLTGF-FPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSwrTKSNSNL 323

                        330       340
                 ....*....|....*....|..
gi 383215347 319 LLTSMVMISTLGLICTSTLISL 340
Cdd:MTH00200 324 LVGLLLLLSILGLPLTPQLLFL 345
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-332 6.81e-44

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 153.50  E-value: 6.81e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347   5 SMKLLFLSTLLMGTILSISSNTWIGIWMGLEINLLSFIPMLANSKNMMMNESAIKYFIVQAMASTMLLFSILLIqlkipI 84
Cdd:MTH00144   4 PSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIM-----Y 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  85 NWEKEIIPSMMISSSLLLKIGAAPFHFWFPEVMSMSSWINCLILMTWQKIAPMMVLSYCI---QMSTFMFMINILSIIIG 161
Cdd:MTH00144  79 NLSFSWFSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLdlyWLAYLLCVISVLSALVG 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347 162 ALGGLNQTSLRQILAYSSISHLGWMISSLIISENIWELYFIIYSTLSMIMVLLFKNMNLFFLNQIYSSNNMKTEIKFMMF 241
Cdd:MTH00144 159 SIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSIIS 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347 242 lSLLSLGGLPPFLGLIlPKWIIMQMMIENNMTTIMTIMVIFTTITLYYYMRISFSALImsytenSWFMSIKPNKSKILLT 321
Cdd:MTH00144 239 -LLLSLGGLPPFLGFC-SKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL------SSSKSKKSNSSKVLNS 310

                        330
                 ....*....|.
gi 383215347 322 SMVMISTLGLI 332
Cdd:MTH00144 311 SIISLNLLGGL 321
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 8-320 1.62e-41

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 147.62  E-value: 1.62e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347   8 LLFLSTLLMGTILSISSNTWIGIWMGLEINLLSFIPMLANSKNMMMNESAIKYFIVQAMASTMLLFSILLIqlkIPINWE 87
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMM---WSFPSL 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  88 KEIIPSMMISSSLLLKIGAAPFHFWFPEVMSMSSWINCLILMTWQKIAPMMVLSYC--IQMSTFMFMINILSIIIGALGG 165
Cdd:MTH00011  86 LKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFtsHNILPMMTSMAAMSALAGGLGG 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347 166 LNQTSLRQILAYSSISHLGWMISSLIISENIWELYFIIYSTLSMIMVLLFKNMNLFFLNQIYSSNNMKTEIKFMMFLSLL 245
Cdd:MTH00011 166 MNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLL 245

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 383215347 246 SLGGLPPFLGLiLPKWIIMQMMIENNMTTIMTIMVIFTTITLYYYMRISFSALIMSYTENSWFMSIKPNKSKILL 320
Cdd:MTH00011 246 SLGGLPPFTGF-MPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPTFSSLKSAPYEPKTKILI 319
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 24-281 9.59e-21

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 90.45  E-value: 9.59e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347   24 SNTWIGIWMGLEINLLSFIPMLA-NSKNMMMNESAIKYFIVQAMASTMLLFSILLI--------------QLKIPINWEK 88
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMynytgtlsfdelskALTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347   89 EIIPSMMISSSLLLKIGAAPFHFWFPEVMSMSSWINCLIL-MTWQKIAPMMVL-------SYCIQMSTFMFMINILSIII 160
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  161 GALGGLNQTSLRQILAYSSISHLGWMISSLIISENI----WELYFIIYSTLSMIMVLLFKNMNL----FFLNQIYSSNNM 232
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFLCAGSVIYrrvhTRNIRDYGGLAK 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 383215347  233 KTEIKFMMFLSLLSLGGLPPFLGLILPKWIIMQMMIENNMTTIMTIMVI 281
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVV 289
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
8-293 1.36e-18

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 86.41  E-value: 1.36e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347   8 LLFLSTLLmGTILSISSNTWIGIWMGLEINLLSFIPMLA-NSKNMMMNESAIKYFIVQAMASTMLLFSILLIQL------ 80
Cdd:PRK05777 107 LLVLFALL-GMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGatgsls 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  81 --KIPINWEKEIIPSM-------MISSSLLLKIGAAPFHFWFPEVMSMSSWINCLILMTWQKIAPMMVL---------SY 142
Cdd:PRK05777 186 faGIAKALADGSGNSLlllfglvFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLlrllvvafgGL 265

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347 143 CIQMSTFMFMINILSIIIGALGGLNQTSLRQILAYSSISHLGWMISSLIISENIWE----LYFIIYS-----TLSMIMVL 213
Cdd:PRK05777 266 SEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsavlFYLLAYLfmtlgAFGVISLL 345

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347 214 LFKNM---NLFFLNQIYSSNNMKTeikFMMFLSLLSLGGLPPFLGLIlPKWIIMQMMIENNMTTIMTIMVIFTTITLYYY 290
Cdd:PRK05777 346 RRKGGeaeSISDFAGLSKRSPLLA---AVMTIFMLSLAGIPPTAGFW-GKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYY 421


                 ...
gi 383215347 291 MRI 293
Cdd:PRK05777 422 LRV 424
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 14-311 5.76e-18

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 83.54  E-value: 5.76e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  14 LLMGTILSISSNTWIGIWMGLEINLLSFIPMLANSKNMMMN-ESAIKYFIVQAMASTMLLFSI----------------L 76
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSGYSaEAGLKYFVLGALSSGLFLFGCallcgttgglhlsyinL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  77 LIQLKIPINWEKEIIPSMMISSSLLLKIGAAPFHFWFPEVMSMSSWINCLILMTWQKIAPMMVLSYCIQMSTFMFMINIL 156
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGGLF 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347 157 SIIIGALGGLNQTSLRQILAYSSISHLGWMISSL----IISENIWELYFIIY--STLSMIMVLLFKNMNLFFLNQiYSSN 230
Cdd:MTH00196 162 SLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYiiMSICVFSIILALNVYKNLIIE-FSGL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347 231 NMKTEIKFMMFLSLLSLGGLPPFLGLILPKWIIMQMMIENNMTTIMTIMVIFTTITLYYYMRIsfsALIMSYTENSWFMS 310
Cdd:MTH00196 241 SRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI---VKILFFQANSFLLI 317


                 .
gi 383215347 311 I 311
Cdd:MTH00196 318 S 318
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 14-293 2.29e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 79.68  E-value: 2.29e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  14 LLMGTILSISSNTWIGIWMGLEINLLSFIPMLANSKNMMMN-ESAIKYFIVQAMASTMLLF------------SILLIQL 80
Cdd:MTH00199 106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVALKRDSAYStEAGLKYFVLGAVSSGLFLFgcallygltgetSIQGINS 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  81 KIPINWEKeiipsMMISSSLLLKIGAAPFHFWFPEVMSMSSWINCLILMTWQKIAPMMVLSYCIQMSTFMFMINILSIII 160
Cdd:MTH00199 186 ILTGDVGK-----ILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLSIIY 260

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347 161 GALGGLNQTSLRQILAYSSISHLGWMISSLIISEN----IWELYFIIYSTLSM--IMVLLFKNMNLFFLNQIySSNNMKT 234
Cdd:MTH00199 261 GAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSFesiqASLIYMIIYVIMSIcsFSIILSLKLTKGLIVEV-SGLSRKN 339

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 383215347 235 EIKFMMFLSLLSLGGLPPFLGLILPKWIIMQMMIENNMTTIMTIMVIFTTITLYYYMRI 293
Cdd:MTH00199 340 PVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-293 3.89e-16

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 79.00  E-value: 3.89e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347   8 LLFLSTLlmGTILSISSNTWIGIWMGLEINLLSFIPMLA-NSKNMMMNESAIKYFIVQAMASTMLLFSILL--------- 77
Cdd:COG1007  107 LLLFATL--GMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLlygatgsln 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  78 ---IQLKIPINWEKE---IIPSMMISSSLLLKIGAAPFHFWFPEVMSMSSWINCLILMTWQKIAPMMVL---------SY 142
Cdd:COG1007  185 lagIAAALAAGGANSpllLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveafpGL 264

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347 143 CIQMSTFMFMINILSIIIGALGGLNQTSLRQILAYSSISHLGWMISSLII-SENIWE---LYFIIYSTLSM---IMVLLF 215
Cdd:COG1007  265 AADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAgTPLGVSaalFYLLAYLFMNLgafAVILLL 344

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347 216 KNmNLFFLNQIYSSNNMKTEIKFMMFlsllslGGLPPFLGLI-LP-------KWIIMQMMIENNMTTIMTIMVIFTTITL 287
Cdd:COG1007  345 SR-KGGEAEEIEDLAGLARRSPLLAL------AMTIFLLSLAgIPptagffgKFYVFSAAVEAGLYWLAVIAVLNSVISA 417


                 ....*.
gi 383215347 288 YYYMRI 293
Cdd:COG1007  418 YYYLRV 423
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 15-338 2.59e-14

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 73.44  E-value: 2.59e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347   15 LMGTILSISSNTWIGIWMGLEI-NLLSFIPMLANSKNMMMNESAIKYFIVQAMASTMLLFSILLI----------QLKIP 83
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELqSLCFYVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIygftgslnfeDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347   84 INWEKEIIPSM-----MISSSLLLKIGAAPFHFWFPEVMSMSSWINCLILMTWQKIA---PMMVLSYCIQMS------TF 149
Cdd:TIGR01770 192 LSNGMLNISLLllgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFGfseawqIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  150 MFMINILSIIIGALGGLNQTSLRQILAYSSISHLGW-MISSLIISENIWE---LYFIIYSTLSMIMVLLFKNMNLFFLNQ 225
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKavlFYIFIYALMSLGAFGVLSLLRSYKDEW 351

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  226 IYSSNNMKTEIKFMMFLSLLSLGGLPPFLGL-----ILPKWIIMQMMIENNMTTIMTIMVIFTTITLYYYMRIsfSALIM 300
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIpplagFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV--VKVMY 429

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 383215347  301 SYTENSWFMSIKPNKSKILLTSMVMISTLGLICTSTLI 338
Cdd:TIGR01770 430 FDKPERRIPSNPQSKAQSLLLSISALFILFLGLFPSLI 467
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 16-187 8.91e-13

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 69.12  E-value: 8.91e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  16 MGTILSISSNTWIGIWMGLEINLLSFIPM---------LANSKNMMMNESAIKYFIVQAMASTMLLF------------- 73
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILagegsqpgsHFPSPGNTPPESGLKYWILGAMSSGFYLFgcalyfgftgneg 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  74 ---SILLIQLKIP-INWEKEIIPSMMISSSLLLKIGAAPFHFWFPEVMSMSSWINCLILMTWQKIAPMMVLSYCIQMSTF 149
Cdd:MTH00198 279 mlgTILSATLETTnIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKL 358

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 383215347 150 MFMINILSIIIGALGGLNQTSLRQILAYSSISHLGWMI 187
Cdd:MTH00198 359 LLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIL 396
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 34-187 3.72e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 48.34  E-value: 3.72e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  34 LEINLLSFIPMLANSKNMMMNESAIKYFIVQAMASTMLLFSILLIQLKI-PINWE--KEIIPSM--------MISSSLLL 102
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTgTLNMAdlAGALAENptvvtafgFVLLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347 103 KIGAAPFHFWFPEVMSM-SSWINCLILMTWQKIAPMMVLSYCIQMSTFMFMIN-----------ILSIIIGALGGLNQTS 170
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTVFGGDFRFAlglgwllavlaLLSMLVGSLAALGQDD 294

                        170
                 ....*....|....*..
gi 383215347 171 LRQILAYSSISHLGWMI 187
Cdd:PRK08375 295 VKRVLAYSTVSQMGYIL 311
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 10-187 4.33e-06

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 48.22  E-value: 4.33e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  10 FLSTLLMGTILSISSNTWIGIWMGLEINLLSFIPMLANSKNMMMNESAIKYFIVQAMASTMLLFSILLI----------Q 79
Cdd:COG0651  112 LFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLygatgtlnmaD 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  80 LKIPInweKEIIPSMMISSSLLL------KIGAAPFHFWFPEVMSM-SSWINCL------------ILMTWQKIAPMMVL 140
Cdd:COG0651  192 LAARL---AELDPGLLLAAFALLlvgfgiKAALFPLHFWLPDAYPAaPSPVSALlsglltkvgvyaILRVLTLLFGADPA 268

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 383215347 141 SYciqMSTFMFMINILSIIIGALGGLNQTSLRQILAYSSISHLGWMI 187
Cdd:COG0651  269 LF---LGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYIL 312
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 55-187 4.92e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 48.17  E-value: 4.92e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  55 ESAIKYFIVQAMASTMLLFSILL------------IQLKIPIN-WEKEIIPSMMISSSLLLKIGAAPFHFWFPEVMSMS- 120
Cdd:PRK08376 172 EAGIKYMFVGSLASSMVLLGIALlygqygtlnmayLAVKMSENpTVVAKIALALFIAGLAMKSGAVPVHMWLPDAYPAAp 251

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 383215347 121 SWINCLILMTWQ-KIAPMMVLSYCIQMSTF--------MFMINILSIIIGALGGLNQTSLRQILAYSSISHLGWMI 187
Cdd:PRK08376 252 SSISAMLLVIKQaGLYALARVLFSIYGPAInlatvgwvIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYML 327
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
54-192 3.15e-05

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 45.43  E-value: 3.15e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  54 NESAIKYFIVQAMASTMLLFSI-LLIQLKIPINWEKEIIPSMMISSSLLL-------------KIGAAPFHFWFPEVMSM 119
Cdd:PRK02504 160 NEAALKYLLIGAASSAIFLYGSsLLYGLSGGSTQLSAIALALITSPSLGLalalvfviagiafKISAVPFHQWTPDVYEG 239

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347 120 SSWINCLILMTWQKIA----PMMVLSYCIQMST----FMFMI-NILSIIIGALGGLNQTSLRQILAYSSISHLGWMISSL 190
Cdd:PRK02504 240 SPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDeqwkLLFTAlAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMIGL 319


                 ..
gi 383215347 191 II 192
Cdd:PRK02504 320 VA 321
ndhB CHL00049
NADH dehydrogenase subunit 2
 8-194 4.59e-05

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 44.99  E-value: 4.59e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347   8 LLFLSTLLMGTILSISSNTWIGIWMGLE-INLLSFIPMLANSKNMMMNESAIKYFIVQAMASTMLL--FSILL------I 78
Cdd:CHL00049 114 LLFVLTATLGGMFLCGANDLITIFVALEcLSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVygFSWLYglsggeI 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  79 QLKIPIN--WEKEIIPSMMISSSLLL-------KIGAAPFHFWFPEVMSMSSWINCLILMTWQKIAPMM--------VLS 141
Cdd:CHL00049 194 ELQEIVNglINTQMYNSPGISIALIFitvgigfKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASAlatrifdiPFY 273

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 383215347 142 YCIQMSTFMFMI-NILSIIIGALGGLNQTSLRQILAYSSISHLGWMISSLIISE 194
Cdd:CHL00049 274 FSSNEWHLLLEIlAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGD 327
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 56-187 6.69e-05

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 44.55  E-value: 6.69e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347   56 SAIKYFIVQAMASTMLLFSIL--------------LIQLKIPINWEKEIIPSMMISssLLLKIGAAPFHFWFPEVMSMSS 121
Cdd:TIGR01972 157 AAMKFFLYTLAGSLLMLLAILglyflgggtfdlleLLNLPLPFGVQTWLFLAFFIA--FAVKVPLFPLHTWLPDAHVEAP 234

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 383215347  122 WINCLILM-TWQKIAPMMVLSYCIQM--------STFMFMINILSIIIGALGGLNQTSLRQILAYSSISHLGWMI 187
Cdd:TIGR01972 235 TAGSVILAgVLLKMGTYGFLRFNLPLfpdaslyfAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309
PRK12650 PRK12650
DUF4040 family protein;
94-190 4.45e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 41.95  E-value: 4.45e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  94 MMISSSLLLKIGAAPFHFWFPEVMSMSSWINCLILMTWQKIAPMMVLsycIQMSTFMFMI---NILSIIIG-------AL 163
Cdd:PRK12650 212 VLIAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLL---LRFSPVFHDVavwNWLLIIVGmitalmgAV 288

                         90       100
                 ....*....|....*....|....*..
gi 383215347 164 GGLNQTSLRQILAYSSISHLGWMISSL 190
Cdd:PRK12650 289 FAVQKTDLKKLTAYSTVSQLGWIVATI 315
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 19-224 9.20e-04

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 40.24  E-value: 9.20e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  19 ILSISSNTWIGIWMGLEINLLSFIPMLANSKNMMMNesaikYFIVQAMASTMLLFSILLIQLKIpinwekeiipsmmiss 98
Cdd:MTH00091   8 FMSLNIFVWWSVFLLMTLLFVFLNKGMGSYSSLFNY-----FVLQESLGLLFLLFSFGYFQFLI---------------- 66

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  99 sLLLKIGAAPFHFWFPEVMSMSSWINCLILMTWQKIAPMMVLSYCIQMSTFMFMinILSIIIGALGGLNQTSLRQILAYS 178
Cdd:MTH00091  67 -LMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLL--LFGLLICFFQMFLLKSYKNLLILS 143

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 383215347 179 SISHLGWMISSLIISENIWELYFIIYSTLSMIMVLLFKNMNLFFLN 224
Cdd:MTH00091 144 STESFNWLILSFFFSFFNVFFLFFYYFLLMLFLIPKFNNVNKLNFV 189
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 145-187 1.56e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 40.34  E-value: 1.56e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 383215347 145 QMSTFMFMINILSIIIGALGGLNQTSLRQILAYSSISHLGWMI 187
Cdd:PRK12665 271 GLDTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMV 313
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 57-184 1.73e-03

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 40.06  E-value: 1.73e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  57 AIKYFIVQAMASTMLLFSIL---------------LIQLKIPINWEKEIIPSMMISssLLLKIGAAPFHFWFPEVMSMS- 120
Cdd:COG1008  163 AIKFFLYTLAGSLLMLVAILalyflagaltfdiaeLAAAPLPLTAQLLLFLAFFIA--FAVKVPMFPFHTWLPDAHVEAp 240

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 383215347 121 ---SWINCLILMtwqKIAPMMVLSYCIQM--------STFMFMINILSIIIGALGGLNQTSLRQILAYSSISHLG 184
Cdd:COG1008  241 tagSVLLAGVLL---KMGGYGLLRFALPLfpeasayfAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMG 312
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 57-187 3.40e-03

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 39.03  E-value: 3.40e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383215347  57 AIKYFIVQAMASTMLLFSIL-----------------LIQLKIPINWEKEIIPSMMISssLLLKIGAAPFHFWFPEVMSM 119
Cdd:PRK05846 163 ATKFFLYTLLGSLLMLVAIIylvvvyynatgtfdiadLLNLPLPPGVQYWLFLAFFIA--FAVKMPMFPLHTWLPDAHVQ 240

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 383215347 120 SSWINCLILM-TWQKIAPMMVLSYCIQM--------STFMFMINILSIIIGALGGLNQTSLRQILAYSSISHLGWMI 187
Cdd:PRK05846 241 APTAGSVLLAgILLKMGAYGLLRFSLPLfpdashefAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVT 317
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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