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Conserved domains on  [gi|383875086|gb|AFH56355|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Zimmerius acer]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-343 7.58e-157

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 443.11  E-value: 7.58e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086   1 MNPQAKLIFSMSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEASTKYFLTQAAASTLLLFSSMTNAWF 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  81 TGQWDITQLNHPMSCMLLTTAISMKLGLVPFHFWFPEVLQGSSLTTSLLLATIMKFPPTILLLLTSPSLNPTLLSMMAIA 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 161 SAALGGWMGLNQTQVRKILAFSSISHLGWMAIILIYNPKLTLITFYLYSLTTAAIFLTLTTTNTLKLATLMTTWSKTPTL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 241 TATLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLTAAATIIALLSLLGLFFYLRLAYCATITISPSSTNHIKHWQTSKS 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|...
gi 383875086 321 INMPTSILTALSITLLPLSPTIL 343
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMIL 343
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-343 7.58e-157

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 443.11  E-value: 7.58e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086   1 MNPQAKLIFSMSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEASTKYFLTQAAASTLLLFSSMTNAWF 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  81 TGQWDITQLNHPMSCMLLTTAISMKLGLVPFHFWFPEVLQGSSLTTSLLLATIMKFPPTILLLLTSPSLNPTLLSMMAIA 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 161 SAALGGWMGLNQTQVRKILAFSSISHLGWMAIILIYNPKLTLITFYLYSLTTAAIFLTLTTTNTLKLATLMTTWSKTPTL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 241 TATLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLTAAATIIALLSLLGLFFYLRLAYCATITISPSSTNHIKHWQTSKS 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|...
gi 383875086 321 INMPTSILTALSITLLPLSPTIL 343
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMIL 343
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 9.85e-29

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 115.60  E-value: 9.85e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  14 LLGTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEASTKYFLTQAAASTLLLF-SSMTNAwFTGQWDITQLNH 91
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAA 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  92 PMS------------CMLLTTAISMKLGLVPFHFWFPEVLQGSSLTTSLLLATIMK---FPPTILLLLTS-PSLNP---T 152
Cdd:COG1007  191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAALLRLLVEAfPGLAAdwqL 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 153 LLSMMAIASAALGGWMGLNQTQVRKILAFSSISHLGWMAIILIYNPKLTL--ITFYL--YSLTTAAIFLTLTTTNTLKLA 228
Cdd:COG1007  271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSRKGGE 350

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 383875086 229 TLMTT-----WSKTPTLTATLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLTAAATIIALLSLLGLFFYLRLAY 298
Cdd:COG1007  351 AEEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 3.93e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 97.00  E-value: 3.93e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086   23 SNHWVMAWTGLEINTLAILPLI-SKSHHPRAIEASTKYFLTQAAASTLLLFSSMTNAWFTGQWDITQL--------NHPM 93
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086   94 SCM---LLTTAISMKLGLVPFHFWFPEVLQGSSLTTSLLLATIMKFPPTILLLLTSPSLNPT------LLSMMAIASAAL 164
Cdd:pfam00361  81 LLLlflLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  165 GGWMGLNQTQVRKILAFSSISHLGWMAIIL----IYNPKLTLITFYLYSLTTAAIFLTLTTTNTLKLATLMTT-----WS 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRdygglAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 383875086  236 KTPTLTATLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 8.05e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.79  E-value: 8.05e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086   14 LLGTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEASTKYFLTQAAASTLLLFSSMTNAWFTGQWDITQLNHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086   93 ------------MSCMLLTTAISMKLGLVPFHFWFPEVLQGSSLTTSLLLATIMKFPPTILLLLTSPSL-------NPTL 153
Cdd:TIGR01770 192 lsngmlnislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfseaWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  154 LSMMAIASAALGGWMGLNQTQVRKILAFSSISHLGWMAIILIYNPKLTL--ITFYL--YSLTTAAIFLTLTTTNTL--KL 227
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYIfiYALMSLGAFGVLSLLRSYkdEW 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 383875086  228 ATLMTTWSKTP----TLTATLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLTAAATIIALLSLLGLFFYLRLA 297
Cdd:TIGR01770 352 IEYISDFAGLFktnpILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-343 7.58e-157

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 443.11  E-value: 7.58e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086   1 MNPQAKLIFSMSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEASTKYFLTQAAASTLLLFSSMTNAWF 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  81 TGQWDITQLNHPMSCMLLTTAISMKLGLVPFHFWFPEVLQGSSLTTSLLLATIMKFPPTILLLLTSPSLNPTLLSMMAIA 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 161 SAALGGWMGLNQTQVRKILAFSSISHLGWMAIILIYNPKLTLITFYLYSLTTAAIFLTLTTTNTLKLATLMTTWSKTPTL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 241 TATLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLTAAATIIALLSLLGLFFYLRLAYCATITISPSSTNHIKHWQTSKS 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|...
gi 383875086 321 INMPTSILTALSITLLPLSPTIL 343
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMIL 343
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-343 1.93e-130

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 376.07  E-value: 1.93e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086   1 MNPQAKLIFSMSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEASTKYFLTQAAASTLLLFSSMTNAWF 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  81 TGQWDITQLNHPMSCMLLTTAISMKLGLVPFHFWFPEVLQGSSLTTSLLLATIMKFPPTILLLLTSPSlNPTLLSMMAIA 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 161 SAALGGWMGLNQTQVRKILAFSSISHLGWMAIILIYNPKLTLITFYLYSLTTAAIFLTLTTTNTLKLATLMTTWSKTPTL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 241 TATLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLTAAATIIALLSLLGLFFYLRLAYCATITISPSSTNHIKHWQT-SK 319
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLpST 319

                        330       340
                 ....*....|....*....|....
gi 383875086 320 SINMPTSILTALSITLLPLSPTIL 343
Cdd:MTH00135 320 QLTLPLAISTTATLMLLPLTPAIL 343
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-343 1.09e-125

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 364.24  E-value: 1.09e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086   1 MNPQAKLIFSMSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEASTKYFLTQAAASTLLLFSSMTNAWF 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  81 TGQWDITQLNHPMSCMLLTTAISMKLGLVPFHFWFPEVLQGSSLTTSLLLATIMKFPPTILLLLTSPSLNPTLLSMMAIA 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 161 SAALGGWMGLNQTQVRKILAFSSISHLGWMAIILIYNPKLTLITFYLYSLTTAAIFLTLTTTNTLKLATLMTTWSKTPTL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 241 TATLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLTAAATIIALLSLLGLFFYLRLAYCATITISPSSTNHIKHWQTSKS 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                        330       340
                 ....*....|....*....|...
gi 383875086 321 INMPTSILTALSITLLPLSPTIL 343
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTIL 343
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-343 3.55e-112

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 329.88  E-value: 3.55e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086   1 MNPQAKLIFSMSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEASTKYFLTQAAASTLLLFSSMTNAWF 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  81 TGQWDITQLNHPMSCMLLTTAISMKLGLVPFHFWFPEVLQGSSLTTSLLLATIMKFPPTILLLLTSPSLNPTLLSMMAIA 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 161 SAALGGWMGLNQTQVRKILAFSSISHLGWMAIILIYNPKLTLITFYLYSLTTAAIFLTLTTTNTLKLATLMTTWSKTPTL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 241 TATLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLTAAATIIALLSLLGLFFYLRLAYCATITISPSSTNHIKHWQTSKS 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                        330       340
                 ....*....|....*....|....
gi 383875086 321 INMP-TSILTALSITLLPLSPTIL 343
Cdd:MTH00105 321 KPMTlLPTLIILSTMLLPLTPMLS 344
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-343 1.68e-92

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 279.55  E-value: 1.68e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086   1 MNPQAKLIFSMSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEASTKYFLTQAAASTLLLFSSMTNAWF 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  81 TGQWDITQLNHPMSCMLLTTAISMKLGLVPFHFWFPEVLQGSSLTTSLLLATIMKFPPTILLLLTSPSLNPTLLSMMAIA 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 161 SAALGGWMGLNQTQVRKILAFSSISHLGWMAIILIYNPKLTLITFYLYSLTTAAIFLTLTTTNTLKLATLMTTWSKTPTL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 241 TATLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLTAAATIIALLSLLGLFFYLRLAYCATITISPSSTNHIKHWQTSKS 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|...
gi 383875086 321 INMPTSILTALSITLLPLSPTIL 343
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLL 343
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-336 9.85e-76

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 236.75  E-value: 9.85e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086   1 MNPQAKLIFSMSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEASTKYFLTQAAASTLLLFSSMTNAWF 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  81 TGQWDITQLNHPMSCMLLTTAISMKLGLVPFHFWFPEVLQGSSLTTSLLLATIMKFPPTILLLLTSPSLNPTLLSMMAIA 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 161 SAALGGWMGLNQTQVRKILAFSSISHLGWMAIILIYNPKLTLITFYLYSLTTAAIFLTLTTTNTLKLATLMTTWSKTPTL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 241 TATLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLTAAATIIALLSLLGLFFYLRLAYCATITISPSSTNHIKHWQTSKS 320
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                        330
                 ....*....|....*.
gi 383875086 321 INMPTSILTALSITLL 336
Cdd:MTH00041 321 ITVYGVILSILSSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-343 3.15e-57

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 188.49  E-value: 3.15e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086   1 MNPQAKLIFSMSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEASTKYFLTQAAASTLLLFSSMTNAWF 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  81 TGqwditqLNHPMSCMLLTTAISMKLGLVPFHFWFPEVLQGSSLTTSLLLATIMKFPPTILLLLTspsLNPTLLSMMAIA 160
Cdd:MTH00160  82 LM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 161 SAALGGWMGLNQTQVRKILAFSSISHLGWMAIILIYNPKLTLITFYLYSLTTAAIFLTLTTTNTLKLATLMTTWSKTPTL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 241 TATLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLTAAATIIALLSLLGLFFYLRLAYCATITISPSSTNHIKhwQTSKS 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLK--KKKNK 310

                        330       340
                 ....*....|....*....|...
gi 383875086 321 INMPTSILTALSITLLPLSPTIL 343
Cdd:MTH00160 311 FSLILNFLSFISLFGLILSSLLF 333
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-336 2.72e-48

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 165.06  E-value: 2.72e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086   5 AKLIFSMSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEASTKYFLTQAAASTLLLFSSMTNAWFTGQW 84
Cdd:MTH00144   5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  85 DItqlnhpMSCMLLttAISMKLGLVPFHFWFPEVLQGSSLTTSLLLATIMKFPPTILLLLTSPSLNP-TLLSMMAIASAA 163
Cdd:MTH00144  85 FS------MSLLLL--GLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSAL 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 164 LGGWMGLNQTQVRKILAFSSISHLGWMAIILIYNPKLTLITFYLYSLTTAAIFlTLTTTNTLKLATLMTTWSKTPTLTAT 243
Cdd:MTH00144 157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLF-FSLWSGDSGSMKDLGSLKPSYKTGLS 235

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 244 LMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLTAAATIIALLSLLGLFFYLRLAYCATItispSSTNHIKHWqTSKSINM 323
Cdd:MTH00144 236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL----SSSKSKKSN-SSKVLNS 310

                        330
                 ....*....|...
gi 383875086 324 PTSILTALSITLL 336
Cdd:MTH00144 311 SIISLNLLGGLLF 323
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-337 7.31e-43

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 151.09  E-value: 7.31e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086   7 LIFSMSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEASTKYFLTQAAASTLLLFSsMTNAWFTgqwdI 86
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLG-MTMMWSF----P 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  87 TQLNHPMSCMLLTtAISMKLGLVPFHFWFPEVLQGSSLTTSLLLATIMKFPPTILLLLTSPSLNPTLLSMMAIASAALGG 166
Cdd:MTH00011  84 SLLKNITALMLLV-SLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 167 WMGLNQTQVRKILAFSSISHLGWMAIILIYNPKLTLITFYLYSLTTAAIFLTLTTTNTLKLATLMTTWSKTPTLTATLML 246
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 247 TLLSLAGLPPLTGFLPKWLIIQELTKQDLTAAATIIALLSLLGLFFYLRLAYcATITISPSSTNhIKHWQTSKSINMPTS 326
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS-LKSAPYEPKTKILIS 320

                        330
                 ....*....|.
gi 383875086 327 ILTaLSITLLP 337
Cdd:MTH00011 321 MCT-LSLGLIP 330
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-298 1.31e-39

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 142.12  E-value: 1.31e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086   8 IFSMSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEASTKYFLTQAAASTLLLFSSMtnAWFTGQWDIT 87
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGS--LSFSNLYLSL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  88 qlnhpMSCMLLTTAISMKLGLVPFHFWFPEVLQGSSLTTSLLLATIMKFPPtiLLLLTSPSLNPTLLSMMAIASAALGGW 167
Cdd:MTH00197  80 -----LSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAP--LLILAFNSSSFMGLLICSVLSSLIGGI 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 168 MGLNQTQVRKILAFSSISHLGWMAIILIYNPKLTLITFYLYSLTTAAIFLTLTTTNTLKLATLMTTWSKTPTLTATLMLT 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 383875086 248 LLSLAGLPPLTGFLPKWLIIQELTKQDLTAAATIIALLSLLGLFFYLRLAY 298
Cdd:MTH00197 233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAY 283
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 9.85e-29

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 115.60  E-value: 9.85e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  14 LLGTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEASTKYFLTQAAASTLLLF-SSMTNAwFTGQWDITQLNH 91
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAA 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  92 PMS------------CMLLTTAISMKLGLVPFHFWFPEVLQGSSLTTSLLLATIMK---FPPTILLLLTS-PSLNP---T 152
Cdd:COG1007  191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAALLRLLVEAfPGLAAdwqL 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 153 LLSMMAIASAALGGWMGLNQTQVRKILAFSSISHLGWMAIILIYNPKLTL--ITFYL--YSLTTAAIFLTLTTTNTLKLA 228
Cdd:COG1007  271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSRKGGE 350

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 383875086 229 TLMTT-----WSKTPTLTATLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLTAAATIIALLSLLGLFFYLRLAY 298
Cdd:COG1007  351 AEEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 2.19e-24

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 103.36  E-value: 2.19e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  14 LLGTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEASTKYFLTQAAASTLLLFSSMTNAWFTGQWDITQL--- 89
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIaka 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  90 ------NHPM---SCMLLTTAISMKLGLVPFHFWFPEVLQGSSLTTSLLLATIMK---FPPTI-LLLLTSPSLNPT---L 153
Cdd:PRK05777 193 ladgsgNSLLllfGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLrLLVVAFGGLSEDwqqV 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 154 LSMMAIASAALGGWMGLNQTQVRKILAFSSISHLGWMAIILIYNPKLTL--ITFYL--YSLTTAAIFLTLTTTNTLKL-A 228
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVISLLRRKGGeA 352

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 383875086 229 TLMTTWS----KTPTLTATLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLTAAATIIALLSLLGLFFYLRL 296
Cdd:PRK05777 353 ESISDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 3.93e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 97.00  E-value: 3.93e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086   23 SNHWVMAWTGLEINTLAILPLI-SKSHHPRAIEASTKYFLTQAAASTLLLFSSMTNAWFTGQWDITQL--------NHPM 93
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086   94 SCM---LLTTAISMKLGLVPFHFWFPEVLQGSSLTTSLLLATIMKFPPTILLLLTSPSLNPT------LLSMMAIASAAL 164
Cdd:pfam00361  81 LLLlflLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  165 GGWMGLNQTQVRKILAFSSISHLGWMAIIL----IYNPKLTLITFYLYSLTTAAIFLTLTTTNTLKLATLMTT-----WS 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRdygglAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 383875086  236 KTPTLTATLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 5.00e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 98.18  E-value: 5.00e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  13 LLLGTTITISSNHWVMAWTGLEINTLAILPLI-SKSHHPRAIEASTKYFLTQAAASTLLLFS-------------SMTNA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  79 WFTGQWDITQLNHPMSCMLLTTAISMKLGLVPFHFWFPEVLQGSSLTTSLLLATIMKFppTILLLLTSPSLNPTLLSMMA 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKL--GIFSILVSIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 159 IASAALGGWMGLNQTQVRKILAFSSISHLGW----MAIILIYNPKLTLITFYLYSLTTAAIFLTLTTTNTLKLATLMTT- 233
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFvlwgIEIGSFESIQASLVYLFIYIIMSICVFSIILALNVYKNLIIEFSg 239

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 383875086 234 -WSKTPTLTATLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLTAAATIIALLSLLGLFFYLRL 296
Cdd:MTH00196 240 lSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 8.05e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.79  E-value: 8.05e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086   14 LLGTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEASTKYFLTQAAASTLLLFSSMTNAWFTGQWDITQLNHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086   93 ------------MSCMLLTTAISMKLGLVPFHFWFPEVLQGSSLTTSLLLATIMKFPPTILLLLTSPSL-------NPTL 153
Cdd:TIGR01770 192 lsngmlnislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfseaWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  154 LSMMAIASAALGGWMGLNQTQVRKILAFSSISHLGWMAIILIYNPKLTL--ITFYL--YSLTTAAIFLTLTTTNTL--KL 227
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYIfiYALMSLGAFGVLSLLRSYkdEW 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 383875086  228 ATLMTTWSKTP----TLTATLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLTAAATIIALLSLLGLFFYLRLA 297
Cdd:TIGR01770 352 IEYISDFAGLFktnpILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 13-296 8.69e-20

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 89.69  E-value: 8.69e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  13 LLLGTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEASTKYFLTQAAASTLLLFSSMTNAWFTGQWDITQLNH 91
Cdd:MTH00199 106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINS 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  92 PMSC----MLLTTAISMKLGLVPFHFWFPEVLQGSSLTTSLLLATIMKFPPTILLLLTSPSLNPTLLSmmAIASAALGGW 167
Cdd:MTH00199 186 ILTGdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAI 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 168 MGLNQTQVRKILAFSSISHLGW----MAIILIYNPKLTLITFYLYSLTTAAIFLTLTTTNTLKLATLMTTW--SKTPTLT 241
Cdd:MTH00199 264 GALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFSIILSLKLTKGLIVEVSGlsRKNPVIA 343

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 383875086 242 ATLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLTAAATIIALLSLLGLFFYLRL 296
Cdd:MTH00199 344 LTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 15-296 1.20e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 80.67  E-value: 1.20e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  15 LGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAI---------EASTKYFLTQAAASTLLLFSSMTNAWFTGQ-- 83
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  84 ------------WDITQLNHPMSCMLLTTAISMKLGLVPFHFWFPEVLQGSSLTTSLLLATIMKFppTILLLLTSPSLNP 151
Cdd:MTH00198 279 mlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 152 TLLSMMAIASAALGGWMGLNQTQVRKILAFSSISHLGWMAIILIYNPKLTLITFYLYSL----TTAAIFLTLTTTNTLKL 227
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVtylvSALASFTVICTLEEFGT 436

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 228 ATLMTTWSKTPT---------------------LTATLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLTAAATIIALLS 286
Cdd:MTH00198 437 RTPTSRQRDGSFgnynlvrrlvdltilsrgqpyIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIYYLVA 516

                        330
                 ....*....|....*..
gi 383875086 287 LLGL-------FFYLRL 296
Cdd:MTH00198 517 LFAIictcisaFYYIRI 533
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-296 1.98e-16

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 79.81  E-value: 1.98e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  13 LLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEASTKYFLTQAAASTLLLFSSMTNAWFTGQWDITQLNHP 92
Cdd:COG0651  116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAR 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  93 MS----------CMLLTTAISMKLGLVPFHFWFPEVLQGSSLTTSLLLATIM---------KFPPTILLLLTSPSLNPTL 153
Cdd:COG0651  196 LAeldpglllaaFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtkvgvyailRVLTLLFGADPALFLGTLL 275

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 154 LSMmAIASAALGGWMGLNQTQVRKILAFSSISHLGWMAI-ILIYNPKLTLITFYLY---SLTTAAIFLTLTTTNTLKLAT 229
Cdd:COG0651  276 LVL-GLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLgLGLGTPLGLAGALFHLlnhALAKALLFLAAGAIERATGTR 354

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 383875086 230 LMTT----WSKTPTLTATLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLTAAATIIALLSLLGLFFYLRL 296
Cdd:COG0651  355 DLDKlgglGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-287 6.33e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 57.03  E-value: 6.33e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  33 LEINTLAILPLIS-KSHHPRAIEASTKYFLTQAAASTLLLFS---------SMTNAWFTGQWDITQLNHPMSCM-LLTTA 101
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 102 ISMKLGLVPFHFWFPEVLQG--SSLTTSLLLATIMKFPPT--ILLLLTSPSLNPT----LLSMMAIASAALGGWMGLNQT 173
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALarVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAVVQK 309

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 174 QVRKILAFSSISHLGWM------AIILIYNPKLTLITFY-----LYSLTTAAIFLTLTTTNTLKLATLMTTWS------- 235
Cdd:PRK08376 310 DVKRLLAYHSVSQIGYMllglgvGLAALGDPAMASYGEIalaggIYHIVNHALYKALLFLTAGAVIYETGTRNlnelggl 389

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 383875086 236 --KTPTLTATLMLTLLSLAGLPPLTGFLPKWLIIQE--LTKQDLTAAATIIALLSL 287
Cdd:PRK08376 390 arTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESsaLFNPILGVIAMIGSVLTL 445
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 7.77e-08

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 53.55  E-value: 7.77e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  49 HPRAIEASTKYFLTQAAASTLLLFSSMTNAWFTGQW--DITQL-NHPMS---------CMLLTTAIsmKLGLVPFHFWFP 116
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELaAAPLPltaqlllflAFFIAFAV--KVPMFPFHTWLP 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 117 EVLQGSSLTTSLLLATIMK-----------FPptiLLLLTSPSLNPTLLSMmAIASAALGGWMGLNQTQVRKILAFSSIS 185
Cdd:COG1008  234 DAHVEAPTAGSVLLAGVLLkmggygllrfaLP---LFPEASAYFAPLLAAL-GVIGIIYGALVALAQTDLKRLIAYSSVS 309


                 ....*..
gi 383875086 186 HLGWMAI 192
Cdd:COG1008  310 HMGFVLL 316
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-340 2.02e-07

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 47.25  E-value: 2.02e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 383875086  291 FFYLRLAYCATITISPSSTNHIKHWQT-SKSINMPTSILTALSITLLPLSP 340
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFnSTKNTLLLPTLTTLSILLLPLTP 51
ndhB CHL00049
NADH dehydrogenase subunit 2
 7-333 6.17e-07

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 50.77  E-value: 6.17e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086   7 LIFSMSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHP-RAIEASTKYFLTQAAASTLLL--FSsmtnaWFTGQ 83
Cdd:CHL00049 114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFS-----WLYGL 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  84 -------WDI------TQLNHPMSC----MLLTTAISMKLGLVPFHFWFPEVLQGS-----------SLTTSLLLATimk 135
Cdd:CHL00049 189 sggeielQEIvnglinTQMYNSPGIsialIFITVGIGFKLSLAPFHQWTPDVYEGSptpvvaflsvtSKVAASALAT--- 265

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 136 fppTILLLLTSPSLNP--TLLSMMAIASAALGGWMGLNQTQVRKILAFSSISHLGWMAIILI-------YNPKLTLITFY 206
Cdd:CHL00049 266 ---RIFDIPFYFSSNEwhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIvgdsndgYASMITYMLFY 342

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 207 LY-SLTT-AAIFLTLTTTNTLKLATLMTTWSKTPTLTATLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLTAAATIIAL 284
Cdd:CHL00049 343 IFmNLGTfACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLL 422

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*....
gi 383875086 285 LSLLGLFFYLRLAYCATITISPSSTNHIKHWQTSkSINMPTSILTALSI 333
Cdd:CHL00049 423 TSVISIYYYLKIIKLLMTGRNQEITPYVRNYRRS-PLRSNNSIELSMIV 470
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-298 2.21e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 49.11  E-value: 2.21e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  33 LEINTLAILPLISKSHHPRAIEASTKYFLTQAAASTLLLFS-SMTNAwFTGQWDI----------TQLNHPMSCMLLttA 101
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMadlagalaenPTVVTAFGFVLL--A 211

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 102 ISMKLGLVPFHFWFPEVLQGSSLTTSLLLA---TIMKFPPTILLLLT----SPSLNPTLLSM-MAIASAAL--GGWMGLN 171
Cdd:PRK08375 212 LALKAAVFPLHTWLPRAYPAAPPVVTALLSglvTKVAVYALIRIYFTvfggDFRFALGLGWLlAVLALLSMlvGSLAALG 291

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 172 QTQVRKILAFSSISHLGWMAIILIYNPKLTLI--TFYL--YSLTTAAIFLTLTTTNTLKLATLMTTWSKTP----TLTAT 243
Cdd:PRK08375 292 QDDVKRVLAYSTVSQMGYILLGLALLTPLALAagLLHLlhHALMKGALFLAAGAIEVTYGTRRLSELSGLGrrmpLTAAA 371

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 383875086 244 LMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLTAAATIIALLSLLGLFFYLRLAY 298
Cdd:PRK08375 372 FAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-192 3.89e-06

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 48.40  E-value: 3.89e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086   50 PRAIEASTKYFLTQAAASTLLLFSSMTNAWFTGQ-WDITQL-NHPMSCMLLT-------TAISMKLGLVPFHFWFPEVLQ 120
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGtFDLLELlNLPLPFGVQTwlflaffIAFAVKVPLFPLHTWLPDAHV 231

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 383875086  121 GSSLTTSLLLATIMKFPPTILLLLTSPSLNP-------TLLSMMAIASAALGGWMGLNQTQVRKILAFSSISHLGWMAI 192
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFNLPLFPdaslyfaPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-190 2.64e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 45.85  E-value: 2.64e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  55 ASTKYFLTQAAASTLLLFSSMTNAWFTG--QWDITQLNH---PMSCMLLTTA-----ISMKLGLVPFHFWFPEVLQGSSL 124
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLRShtlPLSTQLLLLApilvgFGIKIPLVPFHTWLPDAHVEAST 237

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 383875086 125 TTSLLLATIMKFPPTILLLLTSPSLNPTL-------LSMMAIASAALGGWMGLNQTQVRKILAFSSISHLGWM 190
Cdd:PRK06473 238 PVSVLLAGVLLKLGTYGLLRFGVGLFPEAwvylapwLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 8-194 4.85e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 45.14  E-value: 4.85e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086   8 IFSMSLLlgttitISSNHWVMAWTGLEINTLAILPLISKSHH-PRAIEASTKYFLTQAAASTLLLFSSMTNAWFTGQWDI 86
Cdd:COG1009  121 MAAMLGL------VLSDNLLLLFVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNF 194

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  87 TQLNH----PMSCMLLTTAISM-------KLGLVPFHFWFPEVLQGSSLTTSLLLATIMK----FpptiLLLLTSP--SL 149
Cdd:COG1009  195 SELLAaaptILSSPLLTLILLLlllgafgKSAQFPLHFWLPDAMEGPTPVSALLHAATMVkagvY----LLARLSPlfAL 270

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 383875086 150 NPTLLSMMAI---ASAALGGWMGLNQTQVRKILAFSSISHLGWMAIIL 194
Cdd:COG1009  271 SPVWLTVVAIigaITALFAALIALAQTDIKRVLAYSTVSQLGYMFLAL 318
PRK12650 PRK12650
DUF4040 family protein;
96-335 7.11e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 44.65  E-value: 7.11e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  96 MLLTTAISMKLGLVPFHFWFPEVLQGSSLTTSLLLATIMKFPPTILLLLTSPSL--NPT---LLSMMAIASAALGGWMGL 170
Cdd:PRK12650 212 VLIAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFhdVAVwnwLLIIVGMITALMGAVFAV 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 171 NQTQVRKILAFSSISHLGWM-AIILIYNP-KLT--LITFYLYSLTTAAIFLTLTTTNTLKLATLMT----TWSKTPTLTA 242
Cdd:PRK12650 292 QKTDLKKLTAYSTVSQLGWIvATIGVGTPfALTaaVVHTLAHALFKSSLFMLIGVVDHQAGTRDIRrlgsLWRRMPFTFV 371

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 243 TLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLtAAATIIALLSLLGLFFYLRLAYCATITIS-----PSSTNHIKhwQT 317
Cdd:PRK12650 372 SVTIAALSMAAVPPLFGFVSKEGMLTAFLEAPG-GNAGVVLLLVGAALGAVFTFAYSARLVLGafvdgPRDMSHVK--EA 448

                        250
                 ....*....|....*...
gi 383875086 318 SKSINMPTSILTALSITL 335
Cdd:PRK12650 449 PVSLWLPAALPGALSLPL 466
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 1.58e-04

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 43.50  E-value: 1.58e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  50 PRAIEASTKYFLTQAAASTLLLF---------------SSMTNAWFTGQWDITQLnhpmSCMLLTTAISMKLGLVPFHFW 114
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgssllyglsggstqlSAIALALITSPSLGLAL----ALVFVIAGIAFKISAVPFHQW 232

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 115 FPEVLQGSSLTTSLLLATIMK---FPPTILLLLTS-PSLNP---TLLSMMAIASAALGGWMGLNQTQVRKILAFSSISHL 187
Cdd:PRK02504 233 TPDVYEGSPTPVVAFLSVGSKaagFALAIRLLVTAfPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQA 312

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 188 GWMAIILIYNPK--LTLITFYL--YSLTTAAIFLTLTTTNTLKLATLMTTWS----KTPTLTATLMLTLLSLAGLPPLTG 259
Cdd:PRK02504 313 GFVMIGLVAGTEagYASMVFYLlaYLFMNLGAFACVILFSLRTGTDQISDYAglyqKDPLLTLGLSLCLLSLGGIPPLAG 392


                 ....
gi 383875086 260 FLPK 263
Cdd:PRK02504 393 FFGK 396
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 97-194 4.28e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 42.22  E-value: 4.28e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  97 LLTTAISmKLGLVPFHFWFPEVLQGSSLTTSLLLATIM---------KFPPTillLLTSPSLNPTLLSMmAIASAALGGW 167
Cdd:PRK12644 209 ILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG---FADVPVWRPTVLVL-GLATMLLGGW 283

                         90       100
                 ....*....|....*....|....*..
gi 383875086 168 MGLNQTQVRKILAFSSISHLGWMAIIL 194
Cdd:PRK12644 284 RALRQHDLKLILAYGTVSQLGFLTVLV 310
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-192 6.34e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 41.56  E-value: 6.34e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  55 ASTKYFLTQAAASTLLLFSSMTNAWFTGQ--WDITQL---NHPMSCMLLT-----TAISMKLGLVPFHFWFPEVLQGSSL 124
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELgakSYPLALELLLyagflIAFGVKLPIFPLHTWLPDAHGEASA 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 383875086 125 TTSLLLATI-MKFPPTILLLLTSPSLNPT------LLSMMAIASAALGGWMGLNQTQVRKILAFSSISHLGWMAI 192
Cdd:PRK12561 218 PVSMILAGVlLKMGGYALIRFNVQMLPDAhvyfapALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLL 292
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 103-194 1.04e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 40.71  E-value: 1.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 103 SMKLGLvpfHFWFPEVLQGSSLTTSLLLATIMKFPPTILLLLTSPSLNPTLLSMMAIA-----SAALGGWMGLNQTQVRK 177
Cdd:MTH00032 239 SAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIITifgalTAFFAATVGLVQNDLKK 315

                         90
                 ....*....|....*..
gi 383875086 178 ILAFSSISHLGWMAIIL 194
Cdd:MTH00032 316 VIAYSTCSQLGYMVLII 332
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
92-335 1.13e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 40.70  E-value: 1.13e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  92 PMSCMLLTTAISMKLGLVPFhFWFPEVLQGSSLTTSLLLATIMK-------FPPTILLLLTSPSLNPTLLSMMAIASAAL 164
Cdd:PRK12663 207 TTIALLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVI 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 165 GGWMGLNQTQVRKILAFSSISHLGWM-AIILIYNPK-LTLITFYLYS--LTTAAIFLTLTTTNTLKLATLMTTWS----K 236
Cdd:PRK12663 286 GALGALAYKDIRRIAGYQVISSIGFIlLGLALGTPAgINGAIFYLVHdmVVKTALFLIAGSLVRLTGYRSLQYLGglyrK 365

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 237 TPTLTATLMLTLLSLAGLPPLTGFLPKWLIIQ---ELTKQDLTAAATIIALLSLLGLFFYLRLAYCATITISPSSTNHIK 313
Cdd:PRK12663 366 EPLFGALFLILIFAIGGLPPFSGFWGKVLLVQgalDNGAYILLALMLITSLITMYSLFRIFFLAYWGDKDGEEVNFKPIP 445

                        250       260
                 ....*....|....*....|..
gi 383875086 314 HWQTSksinmPTSILTALSITL 335
Cdd:PRK12663 446 LYRKL-----PLSILAVVVIAM 462
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-195 1.32e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 40.29  E-value: 1.32e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 101 AISMKLGLVPFHFWFPEVLQGSSLTTSLLLATI-MKFPPTILLLLTSP-------SLNPTLLSmMAIASAALGGWMGLNQ 172
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGIlLKLGGYGLVRLSWPilplgaqNLAPAVIA-MGIVGIVYGSFATCRQ 317

                         90       100
                 ....*....|....*....|...
gi 383875086 173 TQVRKILAFSSISHLGWMAIILI 195
Cdd:MTH00226 318 IDVKRLVAYSSVAHMGLVSITLV 340
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
52-190 1.49e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 40.39  E-value: 1.49e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  52 AIEASTKYFLTQAAASTLLLFSSMTNAWFTGQWDITQLNHPMSCMLLTTAISMKLGLV----------------PFHFWF 115
Cdd:PRK07376 171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 116 PEVLQGSSLTTSLLLATIMKFPPTILLLLTSPSLNPTLLSMMAIA-----SAALGGWMGLNQTQVRKILAFSSISHLGWM 190
Cdd:PRK07376 251 PDAMEGPTPISALIHAATMVAAGVFLVARMYPVFEQFPAVMTVIAwtgaiTAFLGASIALTQNDIKKGLAYSTISQLGYM 330
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-192 1.58e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 40.12  E-value: 1.58e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  13 LLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEASTKYFLTQAAA------STLLLFSSMTNAWFTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  87 TQLNHP----------MSCMLLTTAISMKLGLVPFHFWFPEV-LQGSSLTTSLLLATIMKFPPTILLLLTS--------P 147
Cdd:PRK08676 191 TELAAHasllspsvlgASFLFIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaaE 270

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 383875086 148 SLNPTLLSMmAIASAALGGWMGLNQTQVRKILAFSSISHLGWMAI 192
Cdd:PRK08676 271 QFSNVLIGL-GIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLL 314
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-192 1.98e-03

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 39.80  E-value: 1.98e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  50 PRAIEASTKYFLTQAAASTLLLFSSMTNAWF----TGQWDITQL-NHPMS---------CMLLTTAIsmKLGLVPFHFWF 115
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLlNLPLPpgvqywlflAFFIAFAV--KMPMFPLHTWL 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 116 PEVLQGSSLTTSLLLATIMKFPPTILLLLTSPSLNPTLLSMMAIASAAL-------GGWMGLNQTQVRKILAFSSISHLG 188
Cdd:PRK05846 235 PDAHVQAPTAGSVLLAGILLKMGAYGLLRFSLPLFPDASHEFAPIIITLgviaiiyGALVALAQTDIKKLIAYSSISHMG 314


                 ....
gi 383875086 189 WMAI 192
Cdd:PRK05846 315 FVTL 318
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
11-190 3.08e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 39.30  E-value: 3.08e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  11 MSLLLGTTITISSNHWVM---AW--TGLEINTLailpLISKSHHPRAIEASTKYFLTQAAASTLLLFSSMTNAWFTGQWD 85
Cdd:PRK08168 107 AGVLAAVHLLVLSDHLLVliaAWaaISLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLS 182

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  86 ITQL-----NHPMS------CMLLTTAISMKLGLVPFHFWFPEVLQGSSLTTSLLLATI--------MKFPPtilLLLTS 146
Cdd:PRK08168 183 LSALwahlaAQGASpslqaaALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAGVvnlggfvlIRFAP---LLEQA 259

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 383875086 147 PSLNpTLLSMMAIASAALGGWMGLNQTQVRKILAFSSISHLGWM 190
Cdd:PRK08168 260 PPAR-WLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFM 302
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 4.54e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 39.04  E-value: 4.54e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  48 HHPRAIEASTKYFLTQAAASTLLLFSSMTNAWFTGQWDITQL-----------NHPM---SCMLLTTAISMKLGLVPFHF 113
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATIlqdselienikGHPLfliTLILIFIGAAAKSAQGPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 114 WFPEVLQGSSLTTSLLLATIMKFPPTILLLLTSPSLNPT-----LLSMMAIASAALGGWMGLNQTQVRKILAFSSISHLG 188
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 189 WMAIILIYNPK------LTLITFYLYSLTT--AAIFLTLTTTNTLKLATLMTTWS----KTPTLTATLMLTLLSLAGLPP 256
Cdd:PRK12649 316 YLMTMYGYTTYhepglgVAAATFHLLNHATfkACLFLVAGIVAHEAATRDIRKLGglrkEMPITFIVASIAALAMAGIPP 395


                 ....*..
gi 383875086 257 LTGFLPK 263
Cdd:PRK12649 396 LNGFLSK 402
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 7-285 5.74e-03

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 38.37  E-value: 5.74e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086   7 LIFSMSLllgttiTISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEASTKYFL------TQAAASTLLLFSS----MT 76
Cdd:PRK06458 117 FLFTMLL------ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIicsvgvAFALFGTILVYANaatvMG 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  77 NAWFTGQW-DITQLNHPMSCMLLTTAISM-------KLGLVPFHFWFPE-----------VLQGSSLTTSLLLatIMKFP 137
Cdd:PRK06458 191 DGEMAILWtELLKHASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALYA--VLRYY 268

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 138 pTILLLLTSPSLNPTLLSMMAIASAALGGWMGLNQTQVRKILAFSSISHLGWMAIILIYNPKL----TLITFYLYSLTTA 213
Cdd:PRK06458 269 -ILIDAAIGSDFPGRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLgifaALLHMLNHSLTKS 347

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 383875086 214 AIFLTLTTTNTLKLATLMTT----WSKTPTLTATLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLTAAATIIALL 285
Cdd:PRK06458 348 AIFFASGNVLQKYGTRDINVirglLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTAGLARGPLLIAILLLLL 423
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-189 5.87e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 38.39  E-value: 5.87e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  33 LEINTLAILPLISKSHHPRAIEASTKYFLTQAAASTLLLFSSMTNAWFTGQWDITQLNH--PMSCMLLTTAISMKLGLVP 110
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 111 FHFWFPEVLQGSSLTTSLLLATIM---KFPPTILLLLTSPSLNPtLLSMMAIASAALGGWMGLNQTQVRKILAFSSISHL 187
Cdd:PRK07234 203 SGLWLPLTHSEAEPPVSALLSGVVvkaGVFPLVRCALDVPGLDL-IVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQL 281


                 ..
gi 383875086 188 GW 189
Cdd:PRK07234 282 GF 283
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 95-333 8.09e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 38.13  E-value: 8.09e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  95 CMLLTTAISMKLGLVPFHFWFPEVLQGSSLTTSLLLATIMKFPPTILLLLTSPSLNPTLLSMMAIA-----SAALGGWMG 169
Cdd:MTH00020 213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEQAPLALIIVTivgslTVFFAATVG 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 170 LNQTQVRKILAFSSISHLGWMAIILiynpKLTLITFYLYSLTTAAIFLTLTTTNTLKLATLMTT----------WSKTPT 239
Cdd:MTH00020 293 LVQNDLKKVIAYSTCSQLGYMVVAC----GLSHYSISLFHLMNHAFFKALLFLSAGSVIHALSDeqdmrkmgglISFLPL 368

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 240 LTATLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLTAAATIIALLS-LLGLFFYLRLAYCATITISPSSTNHIKHWQTS 318
Cdd:MTH00020 369 TYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSaLLTAFYSIRLIYLTFLSNTNLKKAVFFHLHEG 448

                        250
                 ....*....|....*.
gi 383875086 319 K-SINMPTSILTALSI 333
Cdd:MTH00020 449 DwNLLLPLGILALGSI 464
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-298 8.40e-03

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 38.05  E-value: 8.40e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086   2 NPQAKLIFSMSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHpRAIEASTKYFLTQAAASTLLLFSSMTNAWFT 81
Cdd:PRK08668  96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086  82 GQWDITQLNHPMS-----------CMLLTTAISMKLGLVPFHFWFPE-----------VLQG--SSLTTSLLLATIMKFP 137
Cdd:PRK08668 175 GTFDFADISQGLIndtstgfalivFLFLLAFGVAKAGIFPLHVWAPDayseapqsfsaVLSGqlSKLGAYGFLLVLYVLP 254

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 138 PTILLL-----LTSPSLNPTLLSMMAIaSAALGGWMGLNQTQVRKILAFSSISHLGW--MAIILIYNPKLTLITFYLYS- 209
Cdd:PRK08668 255 GTKLFSefgtyRGVPLFNYILAWLGNI-SIIVGTLMAILQEDIKKLIAYSSVANGGYilVGLGLGTSLGFAGGLFHVFNh 333

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383875086 210 -LTTAAIFLTLTTTNTLKLATLMTTWS----KTPTLTATLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLTAAATIIAL 284
Cdd:PRK08668 334 aLFKGLFFLIFAAVIYRTGTTKISEMGglieKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFF 413

                        330
                 ....*....|....
gi 383875086 285 LSLLGLFFYLRLAY 298
Cdd:PRK08668 414 GSIGSFLYVFRPLA 427
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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