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Conserved domains on  [gi|444506890|gb|AFP90478|]
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cytochrome b, partial (mitochondrion) [Dinophysis tripos]

Protein Classification

cytochrome b( domain architecture ID 999997)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl33360
cytochrome b; Provisional
 9-287 1.02e-88

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00156:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 269.73  E-value: 1.02e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890   9 PCPLQINSFWNLGFLLGITIILQIITGIFLGLHYTSDLNSAYFCLFFFIREIYYGWCLRYLHSSGASFVFLSLFLHLGRG 88
Cdd:MTH00156  12 PTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRG 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890  89 ISYGSYFYnPNTWFSGILIFFFLMATAFMGYVLPFGQMSFWGATVITNLLSPFP----SLIECVCGGHYVYNPTLKRFFL 164
Cdd:MTH00156  92 IYYGSYKL-KHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPylgtDLVQWIWGGFSVDNATLTRFFT 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890 165 FHFLFPFLLCGFRILHLFYLHFLSSNNPL-RNSTNNKIPFFPFIFHKDFFGFILILCLYLLQTHFGISSFSHPDNALEAC 243
Cdd:MTH00156 171 FHFLLPFIILAMVMIHLLFLHQTGSNNPLgLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPAN 250

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 444506890 244 GLLTPLHIVPEWYFLCQYAMLKAVPNKNAGFIILLTSIFTFFFF 287
Cdd:MTH00156 251 PLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMIL 294
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 9-287 1.02e-88

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 269.73  E-value: 1.02e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890   9 PCPLQINSFWNLGFLLGITIILQIITGIFLGLHYTSDLNSAYFCLFFFIREIYYGWCLRYLHSSGASFVFLSLFLHLGRG 88
Cdd:MTH00156  12 PTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRG 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890  89 ISYGSYFYnPNTWFSGILIFFFLMATAFMGYVLPFGQMSFWGATVITNLLSPFP----SLIECVCGGHYVYNPTLKRFFL 164
Cdd:MTH00156  92 IYYGSYKL-KHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPylgtDLVQWIWGGFSVDNATLTRFFT 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890 165 FHFLFPFLLCGFRILHLFYLHFLSSNNPL-RNSTNNKIPFFPFIFHKDFFGFILILCLYLLQTHFGISSFSHPDNALEAC 243
Cdd:MTH00156 171 FHFLLPFIILAMVMIHLLFLHQTGSNNPLgLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPAN 250

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 444506890 244 GLLTPLHIVPEWYFLCQYAMLKAVPNKNAGFIILLTSIFTFFFF 287
Cdd:MTH00156 251 PLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMIL 294
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-287 6.52e-57

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 188.85  E-value: 6.52e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890   1 MKSHLQsYPCPLQINSFWNLGFLLGITIILQIITGIFLGLHYTSDLNSAYFCLFFFIREIYYGWCLRYLHSSGASFVFLS 80
Cdd:COG1290   24 VREHLE-YPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAA 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890  81 LFLHLGRGISYGSYfYNPN--TWFSGILIFFFLMATAFMGYVLPFGQMSFWGATVITNLLSPFP----SLIECVCGGHYV 154
Cdd:COG1290  103 VYLHMFRGFFYGAY-KKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPvigtWLVTWLFGGEFP 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890 155 YNPTLKRFFLF-HFLFPFLLCGFRILHLFYLHFLSSNNPL---RNSTNNK--IPFFPFIFHKDFFGFILILCLYLLQThf 228
Cdd:COG1290  182 GDATLNRFFALhVLLLPALLLALVVLHLWLLHRHGHNNPPgpeRKKTEKVdgVPFHPYYTVKDGFGFFVFLGVFALLA-- 259

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890 229 GISSFSHPDNALEACGLLTPLHIVPEWYFLCQYAMLKAVPNKNA-GFIILLTSIFTFFFF 287
Cdd:COG1290  260 FFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPGSAKlGGVIAMGLAILVLFL 319
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 3-190 1.65e-47

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 158.69  E-value: 1.65e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890   3 SHLQSYPCPLQINSFWNLGFLLGITIILQIITGIFLGLHYTSDLNSAYFCLFFFIREIYYGWCLRYLHSSGASFVFLSLF 82
Cdd:cd00284    8 NSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLY 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890  83 LHLGRGISYGSYFY-NPNTWFSGILIFFFLMATAFMGYVLPFGQMSFWGATVITNLLSPFP----SLIECVCGGHYVYNP 157
Cdd:cd00284   88 LHIFRGLYYGSYKKpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPvigiTLVEWLWGGFSVDNA 167

                        170       180       190
                 ....*....|....*....|....*....|...
gi 444506890 158 TLKRFFLFHFLFPFLLCGFRILHLFYLHFLSSN 190
Cdd:cd00284  168 TLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
5-185 9.12e-41

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 140.98  E-value: 9.12e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890    5 LQSYPCPLQINSFWNLGFLLGITIILQIITGIFLGLHYTSDLNSAYFCLFFFIREIYYGWCLRYLHSSGASFVFLSLFLH 84
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890   85 LGRGISYGSYFY-NPNTWFSGILIFFFLMATAFMGYVLPFGQMSFWGATVITNLLSPFP----SLIECVCGGHYVYNPTL 159
Cdd:pfam00033  81 IFRGLYYGGFSYpRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPvigdTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*.
gi 444506890  160 KRFFLFHFLFPFLLCGFRILHLFYLH 185
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLH 186
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 247-281 4.22e-03

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 37.47  E-value: 4.22e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 444506890  247 TPLHIVPEWYFLCQYAMLKAVPNKNAGfIILLTSI 281
Cdd:TIGR01156  71 TPLEILPEWYFYPVFQILRTVPNKLLG-VLLMAAV 104
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 9-287 1.02e-88

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 269.73  E-value: 1.02e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890   9 PCPLQINSFWNLGFLLGITIILQIITGIFLGLHYTSDLNSAYFCLFFFIREIYYGWCLRYLHSSGASFVFLSLFLHLGRG 88
Cdd:MTH00156  12 PTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRG 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890  89 ISYGSYFYnPNTWFSGILIFFFLMATAFMGYVLPFGQMSFWGATVITNLLSPFP----SLIECVCGGHYVYNPTLKRFFL 164
Cdd:MTH00156  92 IYYGSYKL-KHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPylgtDLVQWIWGGFSVDNATLTRFFT 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890 165 FHFLFPFLLCGFRILHLFYLHFLSSNNPL-RNSTNNKIPFFPFIFHKDFFGFILILCLYLLQTHFGISSFSHPDNALEAC 243
Cdd:MTH00156 171 FHFLLPFIILAMVMIHLLFLHQTGSNNPLgLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPAN 250

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 444506890 244 GLLTPLHIVPEWYFLCQYAMLKAVPNKNAGFIILLTSIFTFFFF 287
Cdd:MTH00156 251 PLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMIL 294
CYTB MTH00191
cytochrome b; Provisional
 9-287 1.71e-88

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 269.48  E-value: 1.71e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890   9 PCPLQINSFWNLGFLLGITIILQIITGIFLGLHYTSDLNSAYFCLFFFIREIYYGWCLRYLHSSGASFVFLSLFLHLGRG 88
Cdd:MTH00191  19 PSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRG 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890  89 ISYGSYFyNPNTWFSGILIFFFLMATAFMGYVLPFGQMSFWGATVITNLLSPFP----SLIECVCGGHYVYNPTLKRFFL 164
Cdd:MTH00191  99 LYYGSYL-NKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPyigdDLVQWLWGGFSVDNATLTRFFT 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890 165 FHFLFPFLLCGFRILHLFYLHFLSSNNPLR-NSTNNKIPFFPFIFHKDFFGFILILCLYLLQTHFGISSFSHPDNALEAC 243
Cdd:MTH00191 178 FHFLLPFLIAALSLIHLLFLHETGSNNPLGlNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPAN 257

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 444506890 244 GLLTPLHIVPEWYFLCQYAMLKAVPNKNAGFIILLTSIFTFFFF 287
Cdd:MTH00191 258 PLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLL 301
CYTB MTH00145
cytochrome b; Provisional
 1-287 3.42e-88

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 269.08  E-value: 3.42e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890   1 MKSHLQSYPCPLQINSFWNLGFLLGITIILQIITGIFLGLHYTSDLNSAYFCLFFFIREIYYGWCLRYLHSSGASFVFLS 80
Cdd:MTH00145  15 VNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFIC 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890  81 LFLHLGRGISYGSYFYNpNTWFSGILIFFFLMATAFMGYVLPFGQMSFWGATVITNLLSPFP----SLIECVCGGHYVYN 156
Cdd:MTH00145  95 IYLHIGRGLYYGSYLMQ-HTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPyvgkMLVEWVWGGFSVGN 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890 157 PTLKRFFLFHFLFPFLLCGFRILHLFYLHFLSSNNPL-RNSTNNKIPFFPFIFHKDFFGFILILCLYLLQTHFGISSFSH 235
Cdd:MTH00145 174 ATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLgLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGD 253

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 444506890 236 PDNALEACGLLTPLHIVPEWYFLCQYAMLKAVPNKNAGFIILLTSIFTFFFF 287
Cdd:MTH00145 254 PENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFL 305
CYTB MTH00119
cytochrome b; Provisional
 9-285 2.10e-86

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 264.46  E-value: 2.10e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890   9 PCPLQINSFWNLGFLLGITIILQIITGIFLGLHYTSDLNSAYFCLFFFIREIYYGWCLRYLHSSGASFVFLSLFLHLGRG 88
Cdd:MTH00119  23 PTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRG 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890  89 ISYGSYFYNpNTWFSGILIFFFLMATAFMGYVLPFGQMSFWGATVITNLLSPFP----SLIECVCGGHYVYNPTLKRFFL 164
Cdd:MTH00119 103 LYYGSYLYK-ETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPyigqTLVEWIWGGFSVDNPTLTRFFA 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890 165 FHFLFPFLLCGFRILHLFYLHFLSSNNPL-RNSTNNKIPFFPFIFHKDFFGFILILCLYLLQTHFGISSFSHPDNALEAC 243
Cdd:MTH00119 182 LHFLLPFLIAGLTLIHLLFLHETGSNNPLgLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPAN 261

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 444506890 244 GLLTPLHIVPEWYFLCQYAMLKAVPNKNAGFIILLTSIFTFF 285
Cdd:MTH00119 262 PLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILF 303
CYTB MTH00100
cytochrome b; Provisional
 9-281 3.58e-86

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 263.81  E-value: 3.58e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890   9 PCPLQINSFWNLGFLLGITIILQIITGIFLGLHYTSDLNSAYFCLFFFIREIYYGWCLRYLHSSGASFVFLSLFLHLGRG 88
Cdd:MTH00100  22 PAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRG 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890  89 ISYGSYFYnPNTWFSGILIFFFLMATAFMGYVLPFGQMSFWGATVITNLLSPFP----SLIECVCGGHYVYNPTLKRFFL 164
Cdd:MTH00100 102 LYYGSYLF-LETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPyigtTLVEWIWGGFSVDKATLTRFFA 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890 165 FHFLFPFLLCGFRILHLFYLHFLSSNNPLR-NSTNNKIPFFPFIFHKDFFGFILILCLYLLQTHFGISSFSHPDNALEAC 243
Cdd:MTH00100 181 FHFILPFIITALAMVHLLFLHETGSNNPSGiPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPAN 260

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 444506890 244 GLLTPLHIVPEWYFLCQYAMLKAVPNKNAGFIILLTSI 281
Cdd:MTH00100 261 PLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSI 298
CYTB MTH00074
cytochrome b; Provisional
 9-286 7.05e-83

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 255.38  E-value: 7.05e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890   9 PCPLQINSFWNLGFLLGITIILQIITGIFLGLHYTSDLNSAYFCLFFFIREIYYGWCLRYLHSSGASFVFLSLFLHLGRG 88
Cdd:MTH00074  23 PTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRG 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890  89 ISYGSYFYNpNTWFSGILIFFFLMATAFMGYVLPFGQMSFWGATVITNLLSPFP----SLIECVCGGHYVYNPTLKRFFL 164
Cdd:MTH00074 103 LYYGSYMYK-ETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPymgdTLVQWIWGGFSVDKATLTRFFA 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890 165 FHFLFPFLLCGFRILHLFYLHFLSSNNPL-RNSTNNKIPFFPFIFHKDFFGFILILCLYLLQTHFGISSFSHPDNALEAC 243
Cdd:MTH00074 182 FHFLLPFLIAGASIIHLLFLHETGSNNPTgLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPAN 261

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 444506890 244 GLLTPLHIVPEWYFLCQYAMLKAVPNKNAGFIILLTSIFTFFF 286
Cdd:MTH00074 262 PLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILML 304
CYTB MTH00131
cytochrome b; Provisional
 9-281 7.04e-82

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 253.04  E-value: 7.04e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890   9 PCPLQINSFWNLGFLLGITIILQIITGIFLGLHYTSDLNSAYFCLFFFIREIYYGWCLRYLHSSGASFVFLSLFLHLGRG 88
Cdd:MTH00131  22 PAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRG 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890  89 ISYGSYFYNpNTWFSGILIFFFLMATAFMGYVLPFGQMSFWGATVITNLLSPFP----SLIECVCGGHYVYNPTLKRFFL 164
Cdd:MTH00131 102 LYYGSYLYK-ETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPyvgnTLVQWIWGGFSVDNATLTRFFA 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890 165 FHFLFPFLLCGFRILHLFYLHFLSSNNPL-RNSTNNKIPFFPFIFHKDFFGFILILCLYLLQTHFGISSFSHPDNALEAC 243
Cdd:MTH00131 181 FHFLFPFVIAAATILHLLFLHETGSNNPLgLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPAN 260

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 444506890 244 GLLTPLHIVPEWYFLCQYAMLKAVPNKNAGFIILLTSI 281
Cdd:MTH00131 261 PLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSI 298
CYTB MTH00016
cytochrome b; Validated
 1-286 9.53e-82

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 252.68  E-value: 9.53e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890   1 MKSHLQSYPCPLQINSFWNLGFLLGITIILQIITGIFLGLHYTSDLNSAYFCLFFFIREIYYGWCLRYLHSSGASFVFLS 80
Cdd:MTH00016  15 MNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFIC 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890  81 LFLHLGRGISYGSYFYNpNTWFSGILIFFFLMATAFMGYVLPFGQMSFWGATVITNLLSPFP----SLIECVCGGHYVYN 156
Cdd:MTH00016  95 LYLHIGRGIYYGSYFLM-ETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPyigkMLVQWLWGGFSVDN 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890 157 PTLKRFFLFHFLFPFLLCGFRILHLFYLHFLSSNNPLR-NSTNNKIPFFPFIFHKDFFGFILILCLYLLQTHFGISSFSH 235
Cdd:MTH00016 174 ATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGvNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGD 253

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 444506890 236 PDNALEACGLLTPLHIVPEWYFLCQYAMLKAVPNKNAGFIILLTSIFTFFF 286
Cdd:MTH00016 254 PENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFF 304
CYTB MTH00034
cytochrome b; Validated
 3-286 2.35e-75

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 236.14  E-value: 2.35e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890   3 SHLQSYPCPLQINSFWNLGFLLGITIILQIITGIFLGLHYTSDLNSAYFCLFFFIREIYYGWCLRYLHSSGASFVFLSLF 82
Cdd:MTH00034  16 SSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLY 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890  83 LHLGRGISYGSYFyNPNTWFSGILIFFFLMATAFMGYVLPFGQMSFWGATVITNLLSPFP----SLIECVCGGHYVYNPT 158
Cdd:MTH00034  96 FHIGRGLYYGSYV-NIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPyigtDIVQWIWGGFSVDNAT 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890 159 LKRFFLFHFLFPFLLCGFRILHLFYLHFLSSNNPLR-NSTNNKIPFFPFIFHKDFFGFILILCLYLLQTHFGISSFSHPD 237
Cdd:MTH00034 175 LTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGlNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPE 254

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 444506890 238 NALEACGLLTPLHIVPEWYFLCQYAMLKAVPNKNAGFIILLTSIFTFFF 286
Cdd:MTH00034 255 NFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFL 303
CYTB MTH00224
cytochrome b; Provisional
 1-320 5.00e-72

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 227.50  E-value: 5.00e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890   1 MKSHLQSYPCPLQINSFWNLGFLLGITIILQIITGIFLGLHYTSDLNSAYFCLFFFIREIYYGWCLRYLHSSGASFVFLS 80
Cdd:MTH00224  15 LNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLF 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890  81 LFLHLGRGISYGSYFYNpNTWFSGILIFFFLMATAFMGYVLPFGQMSFWGATVITNLLSPFP----SLIECVCGGHYVYN 156
Cdd:MTH00224  95 IYLHVGRGLYYGSFNLS-ETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPyigkDLVEWIWGGFAVDN 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890 157 PTLKRFFLFHFLFPFLLCGFRILHLFYLHFLSSNNPLR-NSTNNKIPFFPFIFHKDFFGFILILCLYLLQTHFGISSFSH 235
Cdd:MTH00224 174 ATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGiNADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTD 253

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890 236 PDNALEACGLLTPLHIVPEWYFLCQYAMLKAVPNKNAGFIILLTSIFTFFF--FGEIRNLTTLSLLNNNGFSLSSFFLSL 313
Cdd:MTH00224 254 PENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFIlpLTSVMNKRSLPFYPLNQLLFWLLVTSW 333


                 ....*..
gi 444506890 314 ISFLWIG 320
Cdd:MTH00224 334 AILTWIG 340
CYTB MTH00022
cytochrome b; Validated
 9-287 6.09e-71

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 224.97  E-value: 6.09e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890   9 PCPLQINSFWNLGFLLGITIILQIITGIFLGLHYTSDLNSAYFCLFFFIREIYYGWCLRYLHSSGASFVFLSLFLHLGRG 88
Cdd:MTH00022  21 PSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRG 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890  89 ISYGSYFYNPnTWFSGILIFFFLMATAFMGYVLPFGQMSFWGATVITNLLSPFP----SLIECVCGGHYVYNPTLKRFFL 164
Cdd:MTH00022 101 LYYGGYLKFH-VWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPyvgtDIVQWVWGGFSVSNATLNRFFS 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890 165 FHFLFPFLLCGFRILHLFYLHFLSSNNPL-RNSTNNKIPFFPFIFHKDFFGFILILCLYLLQTHFGISSFSHPDNALEAC 243
Cdd:MTH00022 180 LHFLFPFILAFLVIVHLIYLHVDGSNNPIgLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQAN 259

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 444506890 244 GLLTPLHIVPEWYFLCQYAMLKAVPNKNAGFIILLTSIFTFFFF 287
Cdd:MTH00022 260 SLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFL 303
CYTB MTH00053
cytochrome b; Provisional
 9-286 4.26e-69

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 219.96  E-value: 4.26e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890   9 PCPLQINSFWNLGFLLGITIILQIITGIFLGLHYTSDLNSAYFCLFFFIREIYYGWCLRYLHSSGASFVFLSLFLHLGRG 88
Cdd:MTH00053  23 PSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRG 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890  89 ISYGSYFyNPNTWFSGILIFFFLMATAFMGYVLPFGQMSFWGATVITNLLSPFP----SLIECVCGGHYVYNPTLKRFFL 164
Cdd:MTH00053 103 IYYGSYT-KIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPyvgdDIVRWVWGGFSVSNATLNRFYS 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890 165 FHFLFPFLLCGFRILHLFYLHFLSSNNPLR-NSTNNKIPFFPFIFHKDFFGFILILCLYLLQTHFGISSFSHPDNALEAC 243
Cdd:MTH00053 182 LHYLLPFILAGLALVHLIALHEDGSNNPIGvRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQAN 261

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 444506890 244 GLLTPLHIVPEWYFLCQYAMLKAVPNKNAGFIILLTSIFTFFF 286
Cdd:MTH00053 262 PLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFF 304
CYTB MTH00086
cytochrome b; Provisional
 1-296 1.30e-60

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 197.47  E-value: 1.30e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890   1 MKSHLQSYPCPLQINSFWNLGFLLGITIILQIITGIFLGLHYTSDLNSAYFCLFFFIREIYYGWCLRYLHSSGASFVFLS 80
Cdd:MTH00086   3 VNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890  81 LFLHLGRGISYGSYFYNpNTWFSGILIFFFLMATAFMGYVLPFGQMSFWGATVITNLLSPFP----SLIECVCGGHYVYN 156
Cdd:MTH00086  83 LYLHIFKGLFMMSYRLK-KVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPiwgpSIVMWIWGGFGVSS 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890 157 PTLKRFFLFHFLFPFLLCGFRILHLFYLHFLSSNNPLRNSTN-NKIPFFPFIFHKDFFGFILILCLYLLQTHFGIsSFSH 235
Cdd:MTH00086 162 ATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDyDKICFGPEYWNKDAYNIIFWLVFIIFSLFYPF-NLGD 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 444506890 236 PDNALEACGLLTPLHIVPEWYFLCQYAMLKAVPNKNAGFIILLTSIFTFFFFGEIRNLTTL 296
Cdd:MTH00086 241 PEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTSC 301
CYTB MTH00033
cytochrome b; Provisional
 9-287 6.67e-58

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 191.30  E-value: 6.67e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890   9 PCPLQINSFWNLGFLLGITIILQIITGIFLGLHYTSDLNSAYFCLFFFIREIYYGWCLRYLHSSGASFVFLSLFLHLGRG 88
Cdd:MTH00033  19 PTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRG 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890  89 ISYGSYfYNPNTWFSGILIFFFLMATAFMGYVLPFGQMSFWGATVITNLLSPFP----SLIECVCGGHYVYNPTLKRFFL 164
Cdd:MTH00033  99 LYYGGY-SRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPsvggSIVEWIWGGFSVSNCTLNRFFS 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890 165 FHFLFPFLLCGFRILHLFYLHFLSSNNPL-RNSTNNKIPFFPFIFHKDFFGFILILCLYLLqthFGISS-----FSHPDN 238
Cdd:MTH00033 178 LHYLLPFVLVGLVLAHLLTLHEKGSNEPLgLVGLSDRTAFHVYFTIKDILGFLILFGVFVI---IGIEPrietlLQDPEN 254

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 444506890 239 ALEACGLLTPLHIVPEWYFLCQYAMLKAVPNKNAGFIILLTSIFTFFFF 287
Cdd:MTH00033 255 FIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLM 303
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-287 6.52e-57

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 188.85  E-value: 6.52e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890   1 MKSHLQsYPCPLQINSFWNLGFLLGITIILQIITGIFLGLHYTSDLNSAYFCLFFFIREIYYGWCLRYLHSSGASFVFLS 80
Cdd:COG1290   24 VREHLE-YPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAA 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890  81 LFLHLGRGISYGSYfYNPN--TWFSGILIFFFLMATAFMGYVLPFGQMSFWGATVITNLLSPFP----SLIECVCGGHYV 154
Cdd:COG1290  103 VYLHMFRGFFYGAY-KKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPvigtWLVTWLFGGEFP 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890 155 YNPTLKRFFLF-HFLFPFLLCGFRILHLFYLHFLSSNNPL---RNSTNNK--IPFFPFIFHKDFFGFILILCLYLLQThf 228
Cdd:COG1290  182 GDATLNRFFALhVLLLPALLLALVVLHLWLLHRHGHNNPPgpeRKKTEKVdgVPFHPYYTVKDGFGFFVFLGVFALLA-- 259

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890 229 GISSFSHPDNALEACGLLTPLHIVPEWYFLCQYAMLKAVPNKNA-GFIILLTSIFTFFFF 287
Cdd:COG1290  260 FFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPGSAKlGGVIAMGLAILVLFL 319
CYTB MTH00046
cytochrome b; Validated
 9-282 4.21e-50

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 170.16  E-value: 4.21e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890   9 PCPLQINSFWNLGFLLGITIILQIITGIFLGLHYTSDLNSAYFCLFFFIREIYYGWCLRYLHSSGASFVFLSLFLHLGRG 88
Cdd:MTH00046  13 PTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRA 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890  89 ISYGSYFYNPnTWFSGILIFFFLMATAFMGYVLPFGQMSFWGATVITNLLSPFP----SLIECVCGGHYVYNPTLKRFFL 164
Cdd:MTH00046  93 LYYSSYSKKG-VWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPivgsLVYKYIVGGFSVTGVTLVRVFS 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890 165 FHFLFPFLLCGFRILHLFYLHFLSSNNPL--RNSTNNKIPFFPFIFHKDFFGFILILCLYLLQTHFGISSFSHPDNALEA 242
Cdd:MTH00046 172 VHICLGFVILGLMVVHLFYLHKSGSSNPLfsSNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEA 251

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 444506890 243 CGLLTPLHIVPEWYFLCQYAMLKAVPNKNAGFIILLTSIF 282
Cdd:MTH00046 252 DPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLVLVLSFLF 291
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 3-190 1.65e-47

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 158.69  E-value: 1.65e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890   3 SHLQSYPCPLQINSFWNLGFLLGITIILQIITGIFLGLHYTSDLNSAYFCLFFFIREIYYGWCLRYLHSSGASFVFLSLF 82
Cdd:cd00284    8 NSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLY 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890  83 LHLGRGISYGSYFY-NPNTWFSGILIFFFLMATAFMGYVLPFGQMSFWGATVITNLLSPFP----SLIECVCGGHYVYNP 157
Cdd:cd00284   88 LHIFRGLYYGSYKKpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPvigiTLVEWLWGGFSVDNA 167

                        170       180       190
                 ....*....|....*....|....*....|...
gi 444506890 158 TLKRFFLFHFLFPFLLCGFRILHLFYLHFLSSN 190
Cdd:cd00284  168 TLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
5-185 9.12e-41

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 140.98  E-value: 9.12e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890    5 LQSYPCPLQINSFWNLGFLLGITIILQIITGIFLGLHYTSDLNSAYFCLFFFIREIYYGWCLRYLHSSGASFVFLSLFLH 84
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890   85 LGRGISYGSYFY-NPNTWFSGILIFFFLMATAFMGYVLPFGQMSFWGATVITNLLSPFP----SLIECVCGGHYVYNPTL 159
Cdd:pfam00033  81 IFRGLYYGGFSYpRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPvigdTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*.
gi 444506890  160 KRFFLFHFLFPFLLCGFRILHLFYLH 185
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLH 186
PRK03735 PRK03735
cytochrome b6; Provisional
 17-161 1.79e-16

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 77.06  E-value: 1.79e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890  17 FWNLGFLLGITIILQIITGIFLGLHYTSDLNSAYFCLFFFIREIYYGWCLRYLHSSGASFVFLSLFLHLGRGISYGSYfY 96
Cdd:PRK03735  41 VYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGY-K 119

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 444506890  97 NPN--TWFSGILIFFFLMATAFMGYVLPFGQMSFWGATVITNLLSPFP----SLIECVCGGHYVYNPTLKR 161
Cdd:PRK03735 120 KPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPvigdFIKTLLRGGEIVGAQTLTR 190
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 191-287 6.05e-13

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 65.36  E-value: 6.05e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890 191 NPLR-NSTNNKIPFFPFIFHKDFFGFILILCLYLLQTHFGISSFSHPDNALEACGLLTPLHIVPEWYFLCQYAMLKAVPN 269
Cdd:cd00290    1 NPLGlASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90
                 ....*....|....*...
gi 444506890 270 KNAGFIILLTSIFTFFFF 287
Cdd:cd00290   81 KLLGVLAMAASILSLFLV 98
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
75-221 1.07e-12

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 65.34  E-value: 1.07e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444506890   75 SFVFLSLFLHLGRGISYGSYFYNPN-TWFSGILIFFFLMATAFMGYVLPFGQMSFWGATVITNLLSPFP----SLIECVC 149
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRElNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPvvgtWLVWLLF 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 444506890  150 GGHYVYNPTLKRFFLFHFLFPFllcgFRILHLFYLHFL------SSNNPLRNSTNNKIPFFPFIFHKDFFGFILILCL 221
Cdd:pfam13631  81 GGPFPGTATIPRFYALHILLLP----GLILALIVAHLLlvekhgQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVAL 154
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
241-287 3.36e-12

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 61.73  E-value: 3.36e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 444506890  241 EACGLLTPLHIVPEWYFLCQYAMLKAVPNKNAGFIILLTSIFTFFFF 287
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLL 47
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 247-281 6.87e-04

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 39.78  E-value: 6.87e-04
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 444506890 247 TPLHIVPEWYFLCQYAMLKAVPNKNAGfIILLTSI 281
Cdd:COG5679   72 TPLEILPEWYLYPVFQILRVVPNKLLG-IVMMAAI 105
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 247-281 4.22e-03

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 37.47  E-value: 4.22e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 444506890  247 TPLHIVPEWYFLCQYAMLKAVPNKNAGfIILLTSI 281
Cdd:TIGR01156  71 TPLEILPEWYFYPVFQILRTVPNKLLG-VLLMAAV 104
petD CHL00058
cytochrome b6/f complex subunit IV
 247-281 4.49e-03

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 37.29  E-value: 4.49e-03
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 444506890 247 TPLHIVPEWYFLCQYAMLKAVPNKNAGfIILLTSI 281
Cdd:CHL00058  71 TPLEILPEWYFFPVFQILRTVPNKLLG-VLLMASV 104
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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