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Conserved domains on  [gi|405133529|gb|AFS17572|]
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neurotrophin-3, partial [Megalapteryx didinus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NTF3_N super family cl44768
Neutrophin-3 N-terminus; This family represents the N-terminal region of neutrophin-3 (NTF3) ...
 11-75 1.77e-34

Neutrophin-3 N-terminus; This family represents the N-terminal region of neutrophin-3 (NTF3) which contains two precursor homology regions located upstream of the mature NTF3 sequence. These regions play important and specific roles in the folding, processing and transport of neurotrophic factors.


The actual alignment was detected with superfamily member pfam19338:

Pssm-ID: 437170  Cd Length: 114  Bit Score: 113.31  E-value: 1.77e-34
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 405133529   11 NMDQRNLPEDSINSLIIKLIQADILKNKLSKQMVDVKENHQNTMQKAEARQDMDGAENVKSDFQP 75
Cdd:pfam19338   1 NMDQRSLPEDSLNSLIIKLIQADLLKNKTSKQMVDVKENYQSTLPKPEAPLEPDGDENAKSDFQP 65
 
Name Accession Description Interval E-value
NTF3_N pfam19338
Neutrophin-3 N-terminus; This family represents the N-terminal region of neutrophin-3 (NTF3) ...
 11-75 1.77e-34

Neutrophin-3 N-terminus; This family represents the N-terminal region of neutrophin-3 (NTF3) which contains two precursor homology regions located upstream of the mature NTF3 sequence. These regions play important and specific roles in the folding, processing and transport of neurotrophic factors.


Pssm-ID: 437170  Cd Length: 114  Bit Score: 113.31  E-value: 1.77e-34
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 405133529   11 NMDQRNLPEDSINSLIIKLIQADILKNKLSKQMVDVKENHQNTMQKAEARQDMDGAENVKSDFQP 75
Cdd:pfam19338   1 NMDQRSLPEDSLNSLIIKLIQADLLKNKTSKQMVDVKENYQSTLPKPEAPLEPDGDENAKSDFQP 65
 
Name Accession Description Interval E-value
NTF3_N pfam19338
Neutrophin-3 N-terminus; This family represents the N-terminal region of neutrophin-3 (NTF3) ...
 11-75 1.77e-34

Neutrophin-3 N-terminus; This family represents the N-terminal region of neutrophin-3 (NTF3) which contains two precursor homology regions located upstream of the mature NTF3 sequence. These regions play important and specific roles in the folding, processing and transport of neurotrophic factors.


Pssm-ID: 437170  Cd Length: 114  Bit Score: 113.31  E-value: 1.77e-34
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 405133529   11 NMDQRNLPEDSINSLIIKLIQADILKNKLSKQMVDVKENHQNTMQKAEARQDMDGAENVKSDFQP 75
Cdd:pfam19338   1 NMDQRSLPEDSLNSLIIKLIQADLLKNKTSKQMVDVKENYQSTLPKPEAPLEPDGDENAKSDFQP 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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